Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Reverse (-)

34027585 .. 34033111

Gene Structure 5527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCCTTCCTTGACAACTGGGCACTCAAGTATGGCAAACTCCAAGAGTTCATCAAATATGAGAAATCTGATGTATTCCGGAAAGCATCCTTTGCTTCCTCCTAAAAGTCCATTTCCTAGTGTTTCCCCATCGTATGCAGATTATGTCTTTAGTCCTGCGATAGGATCAAAAACTATTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCAGAGAGTCTTCTTATAGAGGAGCAACCTTCTTGGCTTGATGATCTCCTAAACGAGCCGGACACACCTATACGCAGAGGAGGCCATCGTCGTTCCTCAAGCGACTCATTTGCATATGTAGATGCAATTAATGTTTCTAACATTGATTATGCTGCTCAAGATGAGTACAAATACAATAATATGTTTTCTGCACCCTCTTGGGGAACTCAAGATTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACTCCGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTGGGAGTGCCATAAGTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAGCATTGTTCTTCACAGTTCAGGATCTTTATCTACTCCGCAAGAAGCAGATGGGGTTGTCTCTACAGCAAGTGAAAAGCAAGATCAGATTGAATCTGGCCCACATGATGCTAAAGCTCCCTCTGAGAAAAAGGACAATTCCAATGCTAAGCCATATGCATCTGAGACAGATGCAAAACGCGCAAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCTGAACTGGAGAGAAATGTGCAAGCTTTACAGGCAAGTGAAAGAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

7.89

Isoelectric Point (pI)

71.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	1 cut(s)	602
AclI	AACGTT	1 cut(s)	766
AclWI	GGATC	2 cut(s)	172, 595
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	3 cut(s)	161, 191, 419
AgsI	TTSAA	2 cut(s)	656, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	4 cut(s)	680, 797, 821, 846
AluI	AGCT	4 cut(s)	680, 797, 821, 846
Alw26I	GTCTC	2 cut(s)	628, 722
AlwI	GGATC	2 cut(s)	172, 595
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	2 cut(s)	301, 661
ApeKI	GCWGC	1 cut(s)	371
AseI	ATTAAT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	197, 499
BaeGI	GKGCMC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	221, 507
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	136, 312, 608
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcoDI	GTCTC	2 cut(s)	628, 722
BfaI	CTAG	2 cut(s)	117, 186
BfmI	CTRYAG	1 cut(s)	627
BisI	GCNGC	1 cut(s)	372
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	662
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	5 cut(s)	94, 331, 661, 724, 731
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	221, 507
BpmI	CTGGAG	1 cut(s)	824
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	4 cut(s)	10, 301, 360, 411
BsaBI	GATNNNNATC	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 191, 419
Bse1I	ACTGG	2 cut(s)	22, 807
Bse8I	GATNNNNATC	1 cut(s)	592
BseAI	TCCGGA	1 cut(s)	77
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	592
BseLI	CCNNNNNNNGG	3 cut(s)	161, 191, 419
BseMII	CTCAG	4 cut(s)	234, 455, 678, 717
BseNI	ACTGG	2 cut(s)	22, 807
BseRI	GAGGAG	2 cut(s)	254, 312
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	2 cut(s)	303, 663
BsiSI	CCGG	2 cut(s)	78, 278
BslI	CCNNNNNNNGG	3 cut(s)	161, 191, 419
BsmAI	GTCTC	2 cut(s)	628, 722
BsnI	GGCC	2 cut(s)	303, 663
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	164, 262, 587, 646
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	2 cut(s)	303, 663
BspCNI	CTCAG	4 cut(s)	233, 454, 679, 718
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	744
BspPI	GGATC	2 cut(s)	172, 595
BsrI	ACTGG	2 cut(s)	22, 807
BssMI	GATC	4 cut(s)	164, 262, 587, 646
Bst4CI	ACNGT	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	5 cut(s)	220, 441, 687, 711, 726
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	4 cut(s)	167, 265, 590, 649
BstMAI	GTCTC	2 cut(s)	628, 722
BstMBI	GATC	4 cut(s)	164, 262, 587, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 300, 743, 827
BstNSI	RCATGY	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	2 cut(s)	221, 507
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	303, 663
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	819
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	3 cut(s)	458, 507, 668
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	5 cut(s)	220, 441, 687, 711, 726
DpnI	GATC	4 cut(s)	166, 264, 589, 648
DpnII	GATC	4 cut(s)	164, 262, 587, 646
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	724
FaeI	CATG	3 cut(s)	461, 510, 671
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 535, 567
FatI	CATG	3 cut(s)	457, 506, 667
FauNDI	CATATG	2 cut(s)	334, 718
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	117, 186
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	303, 663
HapII	CCGG	2 cut(s)	78, 278
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	3 cut(s)	461, 510, 671
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	4 cut(s)	226, 323, 512, 656
HpaII	CCGG	2 cut(s)	78, 278
HphI	GGTGA	2 cut(s)	197, 499
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	9 cut(s)	69, 180, 223, 444, 475, 651, 688, 727, 780
Hpy188III	TCNNGA	4 cut(s)	78, 377, 428, 585
Hpy8I	GTNNAC	1 cut(s)	770
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	15, 258
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	8 cut(s)	137, 200, 332, 344, 410, 722, 737, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 300, 743, 827
HpyF3I	CTNAG	5 cut(s)	220, 441, 687, 711, 726
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	3 cut(s)	461, 510, 671
HspAI	GCGC	1 cut(s)	744
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	164, 262, 587, 646
LmnI	GCTCC	2 cut(s)	241, 685
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	5 cut(s)	94, 331, 661, 724, 731
MaeI	CTAG	2 cut(s)	117, 186
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	4 cut(s)	166, 264, 589, 648
MboI	GATC	4 cut(s)	164, 262, 587, 646
MboII	GAAGA	5 cut(s)	221, 507, 508, 543, 566
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	345, 700, 755
MlyI	GAGTC	3 cut(s)	235, 317, 521
Mph1103I	ATGCAT	1 cut(s)	724
MroI	TCCGGA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	2 cut(s)	348, 452
MspI	CCGG	2 cut(s)	78, 278
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	91, 300, 743, 827
NdeI	CATATG	2 cut(s)	334, 718
NdeII	GATC	4 cut(s)	164, 262, 587, 646
NlaIII	CATG	3 cut(s)	461, 510, 671
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	3 cut(s)	234, 317, 520
PpsI	GAGTC	3 cut(s)	234, 317, 520
PshBI	ATTAAT	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	766
PspPI	GGNCC	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	348, 452
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	164, 262, 587, 646
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	3 cut(s)	235, 317, 521
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	7 cut(s)	250, 289, 682, 769, 799, 823, 848
SfaNI	GCATC	5 cut(s)	94, 331, 661, 724, 731
SfcI	CTRYAG	1 cut(s)	627
SmlI	CTYRAG	4 cut(s)	25, 316, 375, 426
SmoI	CTYRAG	4 cut(s)	25, 316, 375, 426
Sse9I	AATT	3 cut(s)	345, 700, 755
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	2 cut(s)	117, 186
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	769
TasI	AATT	3 cut(s)	345, 700, 755
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	348, 452
Tru9I	TTAA	2 cut(s)	348, 452
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	39, 453
VspI	ATTAAT	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	159
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	2 cut(s)	117, 186
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.