Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

30572960 .. 30578962

Gene Structure 6003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1238800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAAACTCCAAGGGTTCATCAAATATCAGAAATTTTATGTATTCCGGAAAGCATCCTTTACTTCCTCCTAAAAGTCCATTACCTAGTGTTCCCCCATCATATGCAGATTATGTCCTTAGTCCTGCAATTGGATCAAAAACTGTTCAGAAGCCTAGGGAGGGAAATGCACATCACCAGCGGACTTCCTCAGAGAGCCTACTTATAGAGGAACAACCTTCTTGGCTTGATGATCTCCTTAATGAGCCGGACACACCTATACGCAGAGGAGGTCATCGTCGTTCATCAAGTGACTCTTTTGCATATGTGGATGCAATTAATGCTTCTAACCTTGATTATGCCACTCAAGATGATTACAAATATCATAATATGATTTCTGCACTCTCTTGGGGATCCCAAGACCTTGATCCTCGAAAAGATTTACGACATGCTTCATTATACACAGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTTTGAATAGTGTAAATAACCTGAACAGCCTTCCTTCTGTCAGGGATAACATTGTTCTTCAGAGTTCAGGATCATTATCTACACCACAAGAAGCTGATGGGATTGCCTCTACAGCGAGTGAAAAGCATGATCATGTTGATTCTGGTCTTCATGATCCAAAGTCTTCTTCTGAGAGAAAGGACAATTCCAATGCTAAGCCTTATGCATCTGAGACTGATGCAAAACGTGCTAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAGTACATAGCAGAGCTGGAGAGGAATGTACAAGCTTTACAGGCCGAAGGGACTGAAGTTTCGGCTGAGCTTGAGTTTCTCAACCAGCAGAATATGATTCTGAGCATGGAGAACAAAGCCCTCAAGCAGCGCTTAGAAAGTATAGGACAGGAGCAGCTTATCAAATACTTGGAACAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGTCTTGTATCAGCAACAACAGCAACAGCAACAGCAGCAACCTTCTTCAAGCCATAGACGCTCTAACAGCAGAGACCTTGATTCCCAATTTGCAAACCTGTCTTTGAAACACAAGGATGCAAATGCAGGTCGTGACCCTGTAACAGGCGCACTTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

42.17

Weight (kDa)

7.21

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1082
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	1 cut(s)	181
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	6 cut(s)	142, 387, 400, 401, 565, 635
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	3 cut(s)	530, 740, 831
AfaI	GTAC	2 cut(s)	761, 786
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	3 cut(s)	131, 161, 1109
AgsI	TTSAA	3 cut(s)	493, 1014, 1072
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	5 cut(s)	581, 772, 791, 826, 913
AluI	AGCT	5 cut(s)	581, 772, 791, 826, 913
Alw26I	GTCTC	2 cut(s)	692, 1032
AlwI	GGATC	6 cut(s)	142, 387, 400, 401, 565, 635
Aor13HI	TCCGGA	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	3 cut(s)	883, 910, 1000
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
AseI	ATTAAT	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	888, 1115
AsuHPI	GGTGA	2 cut(s)	167, 469
AvrII	CCTAGG	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	392
BbsI	GAAGAC	3 cut(s)	477, 626, 642
BbvI	GCAGC	3 cut(s)	895, 922, 1012
BccI	CCATC	2 cut(s)	106, 578
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	692, 1032
BfaI	CTAG	2 cut(s)	87, 156
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	884, 911, 1001
BlnI	CCTAGG	1 cut(s)	155
BlpI	GCTNAGC	2 cut(s)	681, 822
BlsI	GCNGC	3 cut(s)	885, 912, 1002
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	5 cut(s)	64, 301, 694, 701, 1072
BpiI	GAAGAC	3 cut(s)	477, 626, 642
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	2 cut(s)	681, 822
BpuEI	CTTGAG	3 cut(s)	330, 848, 863
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	2 cut(s)	12, 155
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 161, 1109
Bse8I	GATNNNNATC	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	12, 155
BseGI	GGATG	3 cut(s)	55, 316, 1087
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	3 cut(s)	131, 161, 1109
BseMII	CTCAG	5 cut(s)	204, 648, 687, 813, 848
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	895, 922, 1012
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	48, 248
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	3 cut(s)	131, 161, 1109
BsmAI	GTCTC	2 cut(s)	692, 1032
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	1032
Bsp13I	TCCGGA	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	784
Bsp143I	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Bsp1720I	GCTNAGC	2 cut(s)	681, 822
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	5 cut(s)	203, 649, 688, 814, 849
BspEI	TCCGGA	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	6 cut(s)	142, 387, 400, 401, 565, 635
BspTNI	GGTCTC	1 cut(s)	1032
BsrGI	TGTACA	1 cut(s)	784
BssECI	CCNNGG	2 cut(s)	12, 155
BssMI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
BssT1I	CCWWGG	2 cut(s)	12, 155
Bst4CI	ACNGT	1 cut(s)	145
BstAPI	GCANNNNNTGC	2 cut(s)	320, 713
BstAUI	TGTACA	1 cut(s)	784
BstDEI	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	3 cut(s)	55, 316, 1087
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	2 cut(s)	888, 1115
BstKTI	GATC	7 cut(s)	137, 235, 395, 409, 560, 619, 643
BstMAI	GTCTC	2 cut(s)	692, 1032
BstMBI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
BstMWI	GCNNNNNNNGC	9 cut(s)	320, 599, 713, 797, 985, 1000, 1023, 1032, 1119
BstNSI	RCATGY	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	895, 922, 1012
BstV2I	GAAGAC	3 cut(s)	477, 626, 642
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	3 cut(s)	55, 316, 1087
BveI	ACCTGC	1 cut(s)	1082
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	888, 1115
CseI	GACGC	1 cut(s)	1032
Csp6I	GTAC	2 cut(s)	760, 785
CviAII	CATG	6 cut(s)	428, 477, 614, 620, 638, 862
CviQI	GTAC	2 cut(s)	760, 785
DdeI	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
DpnI	GATC	7 cut(s)	136, 234, 394, 408, 559, 618, 642
DpnII	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
Eco130I	CCWWGG	2 cut(s)	12, 155
Eco31I	GGTCTC	1 cut(s)	1032
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	3 cut(s)	530, 740, 831
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoT14I	CCWWGG	2 cut(s)	12, 155
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	12, 155
FaeI	CATG	6 cut(s)	431, 480, 617, 623, 641, 865
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 872, 904
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	6 cut(s)	427, 476, 613, 619, 637, 861
FauNDI	CATATG	2 cut(s)	103, 304
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	884, 911, 1001
FokI	GGATG	3 cut(s)	42, 323, 1094
Fsp4HI	GCNGC	3 cut(s)	884, 911, 1001
FspBI	CTAG	2 cut(s)	87, 156
GlaI	GCGC	2 cut(s)	887, 1114
GluI	GCNGC	3 cut(s)	884, 911, 1001
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	889
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	2 cut(s)	48, 248
HgaI	GACGC	1 cut(s)	1032
HhaI	GCGC	2 cut(s)	888, 1115
Hin1II	CATG	6 cut(s)	431, 480, 617, 623, 641, 865
Hin6I	GCGC	2 cut(s)	886, 1113
HinP1I	GCGC	2 cut(s)	886, 1113
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	293, 482, 626, 853, 966, 1046
HpaII	CCGG	2 cut(s)	48, 248
HphI	GGTGA	2 cut(s)	167, 469
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	8 cut(s)	32, 150, 193, 549, 658, 697, 750, 858
Hpy188III	TCNNGA	5 cut(s)	48, 347, 555, 638, 1097
Hpy8I	GTNNAC	1 cut(s)	740
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	5 cut(s)	228, 527, 531, 797, 1017
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	712, 736
HpyF10VI	GCNNNNNNNGC	9 cut(s)	320, 599, 713, 797, 985, 1000, 1023, 1032, 1119
HpyF3I	CTNAG	8 cut(s)	119, 190, 657, 681, 696, 822, 857, 889
HpySE526I	ACGT	2 cut(s)	712, 736
Hsp92II	CATG	6 cut(s)	431, 480, 617, 623, 641, 865
HspAI	GCGC	2 cut(s)	886, 1113
Kpn2I	TCCGGA	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	3 cut(s)	895, 922, 1012
LweI	GCATC	5 cut(s)	64, 301, 694, 701, 1072
MaeI	CTAG	2 cut(s)	87, 156
MaeII	ACGT	2 cut(s)	712, 736
MaeIII	GTNAC	3 cut(s)	290, 1097, 1105
MalI	GATC	7 cut(s)	136, 234, 394, 408, 559, 618, 642
MboI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
MboII	GAAGA	7 cut(s)	477, 478, 536, 626, 642, 645, 1002
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	7 cut(s)	34, 129, 315, 670, 725, 935, 1052
MlyI	GAGTC	3 cut(s)	287, 491, 975
MmeI	TCCRAC	1 cut(s)	921
Mph1103I	ATGCAT	1 cut(s)	694
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	2 cut(s)	240, 318
MslI	CAYNNNNRTG	2 cut(s)	618, 1080
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	2 cut(s)	48, 248
MunI	CAATTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	9 cut(s)	320, 599, 713, 797, 985, 1000, 1023, 1032, 1119
NdeI	CATATG	2 cut(s)	103, 304
NdeII	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
NlaIII	CATG	6 cut(s)	431, 480, 617, 623, 641, 865
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	290, 1097
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	1 cut(s)	637
PfeI	GAWTC	3 cut(s)	626, 853, 1046
PkrI	GCNGC	3 cut(s)	885, 912, 1002
PleI	GAGTC	3 cut(s)	287, 490, 974
PpsI	GAGTC	3 cut(s)	287, 490, 974
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	2 cut(s)	761, 786
RsaNI	GTAC	2 cut(s)	760, 785
RseI	CAYNNNNRTG	2 cut(s)	618, 1080
SaqAI	TTAA	2 cut(s)	240, 318
SatI	GCNGC	3 cut(s)	884, 911, 1001
Sau3AI	GATC	7 cut(s)	134, 232, 392, 406, 557, 616, 640
SchI	GAGTC	3 cut(s)	287, 491, 975
SfaNI	GCATC	5 cut(s)	64, 301, 694, 701, 1072
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	618, 1080
SmlI	CTYRAG	3 cut(s)	345, 827, 878
SmoI	CTYRAG	3 cut(s)	345, 827, 878
Sse9I	AATT	7 cut(s)	34, 129, 315, 670, 725, 935, 1052
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	87, 156
StyI	CCWWGG	2 cut(s)	12, 155
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	715, 739
TaqI	TCGA	1 cut(s)	412
TasI	AATT	7 cut(s)	34, 129, 315, 670, 725, 935, 1052
TatI	WGTACW	2 cut(s)	759, 784
TfiI	GAWTC	3 cut(s)	626, 853, 1046
Tru1I	TTAA	2 cut(s)	240, 318
Tru9I	TTAA	2 cut(s)	240, 318
TseFI	GTSAC	2 cut(s)	290, 1097
TseI	GCWGC	3 cut(s)	883, 910, 1000
Tsp45I	GTSAC	2 cut(s)	290, 1097
TspDTI	ATGAA	4 cut(s)	9, 273, 423, 626
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	431
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	2 cut(s)	87, 156
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.