AT1G59510

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012893
Physical Location & Seq
Forward (+)
21859503 .. 21861257
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59510.1

Sequence Viewer

Length: 1146 bp
ATGGACCTTGTTCGATTGAGAGACATAGGTTCAATTTCACCTCAGAGAAGAAGGAAATGGCTGATTCTATTAGCGGTTTTCGGTGTTTCGGGTTACGGAGTTTACAGGGTTTACAATTCTCAATACATCGCTAAGAAGACGAAGCGTCTTATGAAACTCTTCTCAGGCATTGTTTCATTCGCCGAAATGGTCATCGATTCCGCGGAGACGATAAGTATCGTTTCTCGAGATTTGAAAGAGTTTCTCGAATCAAATTCCCACGAAATCCCTAATAGCTTGAAACAGCTATCGAAAATCACCAAATCAAAAGAGTTCACTGATTCTCTAGCTAGGGTTTCTGAAGCTGTAGCGATTGGTGTTTTCCGTGGGTATAATTCCGATCCAAACGTCGAAAAAGAATCGAATTTGAGTGTAGTTGATAGAGTTTTCTCAGAGGAAGGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGTTTTGCTAAGAATCTTGTTCTTGGATTTTACTCTGGTGAGATTGAGATTGGTAGTGATGATTCTTTAAAACCTAGATGGATGAATTTGCTTAGTGATGATAAGTGTAGAGAGCTTTTAGCAGATTGTATTGAGAGATTCACTAGCTCAGCTGTATCGGTGTATATCGATAAAACGGTTGGTGTTAATACTTATGATCAGATATTCGCTGGTTTGACGAATCCGAAACATCGAGATAGTGCTCGAGATGTTCTTGTTTCGGTTTGTAATGGAGCTCTTGAGACGTTCATGAGAACTTCTCATGATGTCTTCACATCTTCAGGAGAGAAAACCGATTCCTCCTTGAGGAAGTCGGAGAATCGAGAAAACGGATGGGCAGAGGCGCTTTCGACTACTTTAGCAGTGCCGAGTAATAGGAAGTTCATGTTTGATGTTACGGGAAGAGTGACGCTAGAGACGATGAGATCAATTCTTGAGTTTGTAATCTTGAAAACGTCACAAAGTTTTAAGAGGAGTTTGGATGTGATTCATGAAGAAGTTACAGAGAGAGGACGTCAAGTAGTTGGATACGTTGGTGCCAAATCTTCAGTGATAATCACTGTTTGTCTTGCGGTTTACTTTCACATCTTTAACCGCTTTGTTCGAGGCCCTCCGGTTTGTTTAAGCCAGCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

42.61

Weight (kDa)

8.67

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10150 AT1G59510
fragaria_vesca FvH4_2g32762
malus_domestica MD08G1079200.v1.1 MD15G1066400.v1.1
prunus_persica Prupe.1G420200_v2.0.a1
pyrus_communis pycom15g06260
rosa_chinensis RchiOBHm_Chr6g0309911
rosa_laevigata RLG00000010524
rosa_multiflora Rmu_co7980562.1_g000001 Rmu_sc0000294.1_g000005
rosa_roxburghii Rroxscaffold_7G00159050
rosa_rugosa Rorug06G0375800
rosa_samantha Rh6AG489700 Rh6BG499100 Rh6CG504000 Rh6DG490200
rosa_wichuraiana Rw6G042620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1043
AccII CGCG 1 cut(s) 203
AciI CCGC 5 cut(s) 74, 201, 203, 1079, 1102
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 3 cut(s) 253, 403, 553
AcuI CTGAAG 3 cut(s) 360, 771, 1038
AcyI GRCGYC 1 cut(s) 1021
AfiI CCNNNNNNNGG 1 cut(s) 813
AgsI TTSAA 4 cut(s) 33, 235, 280, 958
AhdI GACNNNNNGTC 1 cut(s) 144
AluBI AGCT 9 cut(s) 276, 286, 329, 344, 443, 583, 615, 620, 743
AluI AGCT 9 cut(s) 276, 286, 329, 344, 443, 583, 615, 620, 743
Alw21I GWGCWC 2 cut(s) 712, 745
Alw26I GTCTC 4 cut(s) 15, 200, 743, 917
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 2 cut(s) 225, 711
AoxI GGCC 1 cut(s) 1114
ApoI RAATTY 3 cut(s) 253, 403, 553
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 2 cut(s) 4, 1115
AsuHPI GGTGA 3 cut(s) 30, 289, 518
AvaI CYCGRG 2 cut(s) 225, 711
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 1027, 1060
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 2 cut(s) 143, 769
Bbv12I GWGCWC 2 cut(s) 712, 745
BccI CCATC 2 cut(s) 540, 834
BciVI GTATCC 1 cut(s) 1028
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 4 cut(s) 15, 200, 743, 917
BfaI CTAG 6 cut(s) 326, 330, 543, 612, 920, 1144
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 854
BfuI GTATCC 1 cut(s) 1028
BlpI GCTNAGC 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 144
BmeT110I CYCGRG 2 cut(s) 225, 711
BmgT120I GGNCC 2 cut(s) 4, 1115
BmiI GGNNCC 1 cut(s) 1045
BpiI GAAGAC 2 cut(s) 143, 769
BplI GAGNNNNNCTC 2 cut(s) 751, 783
Bpu1102I GCTNAGC 1 cut(s) 616
BpuEI CTTGAG 3 cut(s) 767, 832, 962
Bsa29I ATCGAT 2 cut(s) 195, 636
BsaBI GATNNNNATC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 1021
BsaJI CCNNGG 2 cut(s) 201, 364
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 215
BseCI ATCGAT 2 cut(s) 195, 636
BseDI CCNNGG 2 cut(s) 201, 364
BseGI GGATG 3 cut(s) 555, 845, 994
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMII CTCAG 4 cut(s) 56, 177, 444, 630
BseRI GAGGAG 1 cut(s) 994
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 1116
BshNI GGYRCC 1 cut(s) 1043
BshVI ATCGAT 2 cut(s) 195, 636
BsiHKAI GWGCWC 2 cut(s) 712, 745
BsiHKCI CYCGRG 2 cut(s) 225, 711
BsiSI CCGG 1 cut(s) 1121
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 4 cut(s) 15, 200, 743, 917
BsmBI CGTCTC 3 cut(s) 200, 743, 917
BsnI GGCC 1 cut(s) 1116
BsoBI CYCGRG 2 cut(s) 225, 711
Bsp1286I GDGCHC 2 cut(s) 712, 745
Bsp143I GATC 3 cut(s) 379, 664, 932
Bsp1720I GCTNAGC 1 cut(s) 616
BspACI CCGC 5 cut(s) 74, 201, 203, 1079, 1102
BspANI GGCC 1 cut(s) 1116
BspCNI CTCAG 4 cut(s) 55, 176, 443, 629
BspDI ATCGAT 2 cut(s) 195, 636
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 3 cut(s) 756, 769, 997
BspLI GGNNCC 1 cut(s) 1045
BspPI GGATC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1043
BssECI CCNNGG 2 cut(s) 201, 364
BssMI GATC 3 cut(s) 379, 664, 932
BssNI GRCGYC 1 cut(s) 1021
Bst4CI ACNGT 2 cut(s) 646, 1069
Bst6I CTCTTC 2 cut(s) 164, 904
BstACI GRCGYC 1 cut(s) 1021
BstC8I GCNNGC 1 cut(s) 1136
BstDEI CTNAG 7 cut(s) 42, 132, 163, 430, 477, 560, 616
BstDSI CCRYGG 2 cut(s) 201, 364
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 3 cut(s) 555, 845, 994
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 382, 667, 935
BstMAI GTCTC 4 cut(s) 15, 200, 743, 917
BstMBI GATC 3 cut(s) 379, 664, 932
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 203
BstV2I GAAGAC 2 cut(s) 143, 769
Bsu15I ATCGAT 2 cut(s) 195, 636
BsuI GTATCC 1 cut(s) 1028
BsuRI GGCC 1 cut(s) 1116
BsuTUI ATCGAT 2 cut(s) 195, 636
BtgI CCRYGG 2 cut(s) 201, 364
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 3 cut(s) 555, 845, 994
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 4 cut(s) 315, 876, 1062, 1065
Cac8I GCNNGC 1 cut(s) 1136
CciI TCATGA 3 cut(s) 756, 769, 997
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 2 cut(s) 4, 1115
Cfr42I CCGCGG 1 cut(s) 204
ClaI ATCGAT 2 cut(s) 195, 636
CseI GACGC 2 cut(s) 134, 925
CviAII CATG 4 cut(s) 757, 770, 892, 998
DdeI CTNAG 7 cut(s) 42, 132, 163, 430, 477, 560, 616
DpnI GATC 3 cut(s) 381, 666, 934
DpnII GATC 3 cut(s) 379, 664, 932
DraI TTTAAA 1 cut(s) 537
DriI GACNNNNNGTC 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 164, 904
Eam1105I GACNNNNNGTC 1 cut(s) 144
EarI CTCTTC 2 cut(s) 164, 904
Ecl136II GAGCTC 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 743
Eco57I CTGAAG 3 cut(s) 360, 771, 1038
Eco88I CYCGRG 2 cut(s) 225, 711
EcoICRI GAGCTC 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 1115
EcoT38I GRGCYC 1 cut(s) 745
Esp3I CGTCTC 3 cut(s) 200, 743, 917
FaeI CATG 4 cut(s) 760, 773, 895, 1001
FaiI YATR 9 cut(s) 26, 152, 372, 633, 663, 758, 771, 893, 999
FatI CATG 4 cut(s) 756, 769, 891, 997
FbaI TGATCA 1 cut(s) 664
FokI GGATG 3 cut(s) 562, 852, 1001
FriOI GRGCYC 1 cut(s) 745
FspBI CTAG 6 cut(s) 326, 330, 543, 612, 920, 1144
GlaI GCGC 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 1 cut(s) 1116
HapII CCGG 1 cut(s) 1121
HgaI GACGC 2 cut(s) 134, 925
HhaI GCGC 1 cut(s) 853
Hin1I GRCGYC 1 cut(s) 1021
Hin1II CATG 4 cut(s) 760, 773, 895, 1001
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 3 cut(s) 30, 289, 518
Hpy166II GTNNAC 4 cut(s) 103, 112, 315, 1084
Hpy188I TCNGA 7 cut(s) 45, 340, 379, 433, 669, 693, 823
Hpy8I GTNNAC 4 cut(s) 103, 112, 315, 1084
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 2 cut(s) 45, 431
HpyCH4III ACNGT 2 cut(s) 646, 1069
HpyCH4IV ACGT 5 cut(s) 387, 752, 962, 1021, 1038
HpyF3I CTNAG 7 cut(s) 42, 132, 163, 430, 477, 560, 616
HpySE526I ACGT 5 cut(s) 387, 752, 962, 1021, 1038
Hsp92I GRCGYC 1 cut(s) 1021
Hsp92II CATG 4 cut(s) 760, 773, 895, 1001
HspAI GCGC 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 664
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 3 cut(s) 379, 664, 932
LmnI GCTCC 2 cut(s) 440, 740
LpnPI CCDG 7 cut(s) 91, 150, 429, 489, 663, 774, 1134
MaeI CTAG 6 cut(s) 326, 330, 543, 612, 920, 1144
MaeII ACGT 5 cut(s) 387, 752, 962, 1021, 1038
MaeIII GTNAC 5 cut(s) 92, 901, 913, 963, 1006
MalI GATC 3 cut(s) 381, 666, 934
MboI GATC 3 cut(s) 379, 664, 932
MboII GAAGA 8 cut(s) 60, 148, 151, 769, 777, 921, 1013, 1044
MhlI GDGCHC 2 cut(s) 712, 745
MluCI AATT 8 cut(s) 33, 115, 253, 373, 403, 553, 936, 1139
MmeI TCCRAC 2 cut(s) 801, 1012
MnlI CCTC 9 cut(s) 51, 427, 807, 817, 841, 972, 1010, 1106, 1128
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 5 cut(s) 536, 654, 975, 1098, 1130
MspA1I CMGCKG 2 cut(s) 203, 620
MspI CCGG 1 cut(s) 1121
MvnI CGCG 1 cut(s) 203
NdeII GATC 3 cut(s) 379, 664, 932
NlaIII CATG 4 cut(s) 760, 773, 895, 1001
NlaIV GGNNCC 1 cut(s) 1045
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 2 cut(s) 913, 963
PaeR7I CTCGAG 2 cut(s) 225, 711
PagI TCATGA 3 cut(s) 756, 769, 997
PcsI WCGNNNNNNNCGW 1 cut(s) 923
PdmI GAANNNNTTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 745
PspN4I GGNNCC 1 cut(s) 1045
PspPI GGNCC 2 cut(s) 4, 1115
PvuII CAGCTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 745
SacII CCGCGG 1 cut(s) 204
SaqAI TTAA 5 cut(s) 536, 654, 975, 1098, 1130
Sau3AI GATC 3 cut(s) 379, 664, 932
Sau96I GGNCC 2 cut(s) 4, 1115
SduI GDGCHC 2 cut(s) 712, 745
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 2 cut(s) 225, 711
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 2 cut(s) 225, 711
SmlI CTYRAG 5 cut(s) 225, 711, 746, 811, 941
SmoI CTYRAG 5 cut(s) 225, 711, 746, 811, 941
Sse9I AATT 8 cut(s) 33, 115, 253, 373, 403, 553, 936, 1139
SsiI CCGC 5 cut(s) 74, 201, 203, 1079, 1102
SspMI CTAG 6 cut(s) 326, 330, 543, 612, 920, 1144
SstI GAGCTC 1 cut(s) 745
TaaI ACNGT 2 cut(s) 646, 1069
TaiI ACGT 5 cut(s) 390, 755, 965, 1024, 1041
TasI AATT 8 cut(s) 33, 115, 253, 373, 403, 553, 936, 1139
Tru1I TTAA 5 cut(s) 536, 654, 975, 1098, 1130
Tru9I TTAA 5 cut(s) 536, 654, 975, 1098, 1130
TscAI CASTG 4 cut(s) 322, 876, 1062, 1072
TseFI GTSAC 2 cut(s) 913, 963
Tsp45I GTSAC 2 cut(s) 913, 963
TspDTI ATGAA 7 cut(s) 165, 167, 566, 745, 880, 986, 1014
TspGWI ACGGA 3 cut(s) 111, 353, 852
TspRI CASTG 4 cut(s) 322, 876, 1062, 1072
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 811
XapI RAATTY 3 cut(s) 253, 403, 553
XhoI CTCGAG 2 cut(s) 225, 711
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 6 cut(s) 326, 330, 543, 612, 920, 1144
ZraI GACGTC 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.