Rmu_co7980562.1_g000001

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7980562.1
OG0012893
Physical Location & Seq
Reverse (-)
2 .. 479
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7980562.1_g000001.1.cds

Sequence Viewer

Length: 478 bp
atggcgtctgattcggccgagaccctcagcattgtctccaacgacttgaaggagtttctgaactccggttccgacgaaatgcccaaaagtctgaagcagatttccaagattgcgaggtcggaggagttctccgcgtcgctgcagaggctgacggaggctatgacgatcggggtatgccgagggtttgagcttgagacgaggaatggggctggatcggggaagggtttggggagttcgagctattcactttcagagagagttatggagaaggttttctctgaagccgggaccgggttcgtttcggttgtagttgggagctttgcaaggaatatggttatggggttttactcaaatgagcattcaggtcaggattcggatgtcaatagatgggtcgatgcggtttgtagtgatccaagtaaggagctgatagccaattgcatacaggttttggtgtctactgcggttgcggcgtacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.0

Weight (kDa)

4.81

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10150 AT1G59510
fragaria_vesca FvH4_2g32762
malus_domestica MD08G1079200.v1.1 MD15G1066400.v1.1
prunus_persica Prupe.1G420200_v2.0.a1
pyrus_communis pycom15g06260
rosa_chinensis RchiOBHm_Chr6g0309911
rosa_laevigata RLG00000010524
rosa_multiflora Rmu_co7980562.1_g000001 Rmu_sc0000294.1_g000005
rosa_roxburghii Rroxscaffold_7G00159050
rosa_rugosa Rorug06G0375800
rosa_samantha Rh6AG489700 Rh6BG499100 Rh6CG504000 Rh6DG490200
rosa_wichuraiana Rw6G042620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 455
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 132, 398, 461, 467
AclWI GGATC 2 cut(s) 220, 404
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 113, 300
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 190, 240, 318, 424
AluI AGCT 4 cut(s) 190, 240, 318, 424
Alw26I GTCTC 3 cut(s) 14, 40, 188
AlwI GGATC 2 cut(s) 220, 404
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 286, 292
AvaII GGWCC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 381
BcnI CCSGG 2 cut(s) 286, 292
BcoDI GTCTC 3 cut(s) 14, 40, 188
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 140, 468
BlsI GCNGC 2 cut(s) 141, 469
Bme1390I CCNGG 2 cut(s) 286, 292
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 70, 289
BmrFI CCNGG 2 cut(s) 286, 292
BmsI GCATC 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 113, 145
Bpu10I CCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 286, 292
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 2 cut(s) 18, 168
BshFI GGCC 1 cut(s) 17
BsiEI CGRYCG 2 cut(s) 18, 168
BsiSI CCGG 3 cut(s) 66, 285, 291
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 3 cut(s) 14, 40, 188
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 165, 212, 409
BspACI CCGC 4 cut(s) 132, 398, 461, 467
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 70, 289
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 2 cut(s) 220, 404
BspTNI GGTCTC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 3 cut(s) 165, 212, 409
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 3 cut(s) 168, 215, 412
BstMAI GTCTC 3 cut(s) 14, 40, 188
BstMBI GATC 3 cut(s) 165, 212, 409
BstMCI CGRYCG 2 cut(s) 18, 168
BstMWI GCNNNNNNNGC 2 cut(s) 145, 467
BstSCI CCNGG 2 cut(s) 284, 290
BstSFI CTRYAG 1 cut(s) 140
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 126
BstZI CGGCCG 1 cut(s) 15
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 472
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 26
DpnI GATC 3 cut(s) 167, 214, 411
DpnII GATC 3 cut(s) 165, 212, 409
EaeI YGGCCR 1 cut(s) 15
EagI CGGCCG 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 288
Eco52I CGGCCG 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 113, 300
Esp3I CGTCTC 1 cut(s) 188
FaiI YATR 6 cut(s) 161, 175, 263, 332, 338, 440
FaqI GGGAC 1 cut(s) 301
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 2 cut(s) 140, 468
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 140, 468
FspBI CTAG 1 cut(s) 476
GluI GCNGC 2 cut(s) 140, 468
HaeIII GGCC 1 cut(s) 17
HapII CCGG 3 cut(s) 66, 285, 291
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 2 cut(s) 11, 371
HpaII CCGG 3 cut(s) 66, 285, 291
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 8 cut(s) 10, 60, 73, 93, 121, 253, 280, 376
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 2 cut(s) 77, 139
HpyAV CCTTC 3 cut(s) 43, 214, 262
HpyCH4V TGCA 3 cut(s) 142, 323, 438
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 467
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 165, 212, 409
LmnI GCTCC 2 cut(s) 315, 421
LpnPI CCDG 7 cut(s) 79, 195, 298, 304, 348, 353, 428
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 476
MalI GATC 3 cut(s) 167, 214, 411
MboI GATC 3 cut(s) 165, 212, 409
MfeI CAATTG 1 cut(s) 433
MluCI AATT 1 cut(s) 433
MmeI TCCRAC 3 cut(s) 63, 96, 99
MnlI CCTC 7 cut(s) 35, 108, 115, 138, 148, 173, 192
MroXI GAANNNNTTC 1 cut(s) 272
MspI CCGG 3 cut(s) 66, 285, 291
MspR9I CCNGG 2 cut(s) 286, 292
MunI CAATTG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 358
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 145, 467
NciI CCSGG 2 cut(s) 286, 292
NdeII GATC 3 cut(s) 165, 212, 409
NlaIV GGNNCC 2 cut(s) 70, 289
NmeAIII GCCGAG 2 cut(s) 43, 203
PctI GAATGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 11, 371
PkrI GCNGC 2 cut(s) 141, 469
Ple19I CGATCG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 70, 289
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 148
PvuI CGATCG 1 cut(s) 168
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SatI GCNGC 2 cut(s) 140, 468
Sau3AI GATC 3 cut(s) 165, 212, 409
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 286, 292
SetI ASST 9 cut(s) 119, 192, 242, 273, 320, 367, 426, 447, 477
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 433
SsiI CCGC 4 cut(s) 132, 398, 461, 467
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 284, 290
TaqI TCGA 2 cut(s) 236, 393
TasI AATT 1 cut(s) 433
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 11, 371
TseI GCWGC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.