Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012893

Physical Location & Seq

Genomic Coordinates Reverse (-)

36350902 .. 36352283

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G420200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAGTTGGGCTCGTCACGAAAGGCTTGAATTTCTCTCGGCGGAGAAAGAGATGGCTTTTCGCACTTGCAGCTCTTGGCGTGTCCGGTTATGGTGCTTATAGGGTTTATAACTTGCCCTCTGTGGTCAAGAAGAGAAAGAGGTTCGTGAAGCTCTTAGGAGCCTTAATTTCTGTGGCCGAGATGGTCTCTGATTCGGCTGAGACCATCGGCATTGTCTCCAAGGACTTGAAGGAGTTTCTACGTTCTGATTCAGACGAAATGCCCCAGAGTTTAGTGCAAATTTCCAAAATTGCGAGGTCGGAGGAGTTCTCTGGGTCGCTGAGTAAGCTTACAGAGGCTATGACGGTTGGGATTGTTCGAGGGTGTAAATTGGAGATGGAAAATCAGAGTGAATCAGAGACGGGTTTGGGGAATTCGAGCTTTTCCGATAGGGTTTTGGAGAAGGTTTTCTCTACAGCCGGGACAGGGTTCGTTTCTGTTGTGGTTGGGAGCTTTGCGAGGAACTTGATTCGGGGTTTTTACTCCAATGATCAATCAGTCGATAATTCCAGTTCGTCCAGGTCAAGTTTATCGGATGTGCCTAGATGGGTTAACGTGGTTTGCAGTGATAGAAGTAAGGAGCTCATGGCAAATTGCATACAGGTTTTCGTAAGCACTGCAGTTGCAGTGTATCTTGACAAAACGAAGGATATCAATTTCATTGATGAAATGTTTGATGGACTGACCAATTCCAAGCATCAAAACAAAGTAAGGGACGTTCTGGTTTCTCTTTGTAATGGTGCTGTGGAAACGGTCGTCAGAACTTCTCACCAAGTTTTGACGAGTTCAAGCTCGAATTCGTGTTCTTTCTCCATTGTTGATCAGAATGAAGGTCTAAGTGGAACTACAGACCAGTGCTTGGAGCAAGAAGTATCTGCAGGGCAGCCGAAGGAGGGAACTTCATTGGATGTTATTCAGAGTAGTGGGTGGGTCGGCAAGGTTTCATCTACATTGGCAGTGCCAAGCAATAGGAAGTTTGTTCTTGATGTGACAGGGAGGGTGACATTTGAGACAGTACGTTCTCTTGTTGAATTTATGTTGTGGACGGTGTTAGATGGCTTGAAAAGAAGTGTTAATGTACTTCATGGGGAGGTTGAAGACAGGGGATTGCAAGTCATCAGATACTTCAGTGGAAAGTCGTCCGTTATAGTTACCATATGTCTTGTTTTGCATTTATATATCCTGAGTGGTACTAGAGTTCTCTTCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

45.69

Weight (kDa)

8.38

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10150 AT1G59510
fragaria_vesca	FvH4_2g32762
malus_domestica	MD08G1079200.v1.1 MD15G1066400.v1.1
prunus_persica	Prupe.1G420200_v2.0.a1
pyrus_communis	pycom15g06260
rosa_chinensis	RchiOBHm_Chr6g0309911
rosa_laevigata	RLG00000010524
rosa_multiflora	Rmu_co7980562.1_g000001 Rmu_sc0000294.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159050
rosa_rugosa	Rorug06G0375800
rosa_samantha	Rh6AG489700 Rh6BG499100 Rh6CG504000 Rh6DG490200
rosa_wichuraiana	Rw6G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	901
AciI	CCGC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	5 cut(s)	31, 282, 415, 838, 1073
AcuI	CTGAAG	1 cut(s)	1153
AfaI	GTAC	3 cut(s)	1059, 1122, 1234
AfiI	CCNNNNNNNGG	3 cut(s)	468, 901, 935
AgsI	TTSAA	6 cut(s)	31, 232, 831, 1073, 1105, 1139
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	7 cut(s)	74, 154, 331, 423, 495, 625, 834
AluI	AGCT	7 cut(s)	74, 154, 331, 423, 495, 625, 834
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	5 cut(s)	193, 197, 223, 395, 1046
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	71, 925
ApoI	RAATTY	5 cut(s)	31, 282, 415, 838, 1073
Asp700I	GAANNNNTTC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	803, 1054
BaeI	ACNNNNGTAYC	4 cut(s)	1156, 1189, 1224, 1257
BanII	GRGCYC	2 cut(s)	15, 627
BbsI	GAAGAC	1 cut(s)	1146
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	83, 937
BccI	CCATC	7 cut(s)	48, 178, 215, 373, 582, 713, 1091
BciT130I	CCWGG	1 cut(s)	562
BclI	TGATCA	2 cut(s)	532, 862
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	5 cut(s)	193, 197, 223, 395, 1046
BfaI	CTAG	2 cut(s)	585, 1236
BfmI	CTRYAG	4 cut(s)	456, 660, 888, 918
BisI	GCNGC	2 cut(s)	72, 926
BlsI	GCNGC	2 cut(s)	73, 927
Bme1390I	CCNGG	2 cut(s)	463, 562
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	463, 562
BmsI	GCATC	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	1146
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 296, 328
BpuMI	CCSGG	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	193, 197
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 901, 935
Bse1I	ACTGG	2 cut(s)	552, 895
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	583, 955
BseLI	CCNNNNNNNGG	3 cut(s)	468, 901, 935
BseMII	CTCAG	3 cut(s)	192, 314, 1217
BseNI	ACTGG	2 cut(s)	552, 895
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	83, 937
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	87, 462
BslFI	GGGAC	2 cut(s)	478, 770
BslI	CCNNNNNNNGG	3 cut(s)	468, 901, 935
BsmAI	GTCTC	5 cut(s)	193, 197, 223, 395, 1046
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	478, 770
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	2 cut(s)	193, 197
Bsp1286I	GDGCHC	2 cut(s)	15, 627
Bsp143I	GATC	2 cut(s)	532, 862
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	3 cut(s)	193, 315, 1218
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	2 cut(s)	664, 922
BspTNI	GGTCTC	2 cut(s)	193, 197
BsrI	ACTGG	2 cut(s)	552, 895
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	532, 862
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	4 cut(s)	349, 796, 1057, 1090
Bst6I	CTCTTC	2 cut(s)	128, 1250
BstDEI	CTNAG	5 cut(s)	157, 201, 323, 878, 1226
BstF5I	GGATG	2 cut(s)	583, 955
BstKTI	GATC	2 cut(s)	535, 865
BstMAI	GTCTC	5 cut(s)	193, 197, 223, 395, 1046
BstMBI	GATC	2 cut(s)	532, 862
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 328
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	461, 560
BstSFI	CTRYAG	4 cut(s)	456, 660, 888, 918
BstV1I	GCAGC	2 cut(s)	83, 937
BstV2I	GAAGAC	1 cut(s)	1146
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	583, 955
BtsI	GCAGTG	5 cut(s)	613, 657, 675, 1005, 1248
BtsIMutI	CAGTG	7 cut(s)	613, 657, 675, 902, 1005, 1177, 1248
Csp6I	GTAC	3 cut(s)	1058, 1121, 1233
CviAII	CATG	2 cut(s)	628, 1127
CviQI	GTAC	3 cut(s)	1058, 1121, 1233
DdeI	CTNAG	5 cut(s)	157, 201, 323, 878, 1226
DpnI	GATC	2 cut(s)	534, 864
DpnII	GATC	2 cut(s)	532, 862
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	128, 1250
EarI	CTCTTC	2 cut(s)	128, 1250
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	15, 627
Eco31I	GGTCTC	2 cut(s)	193, 197
Eco32I	GATATC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	1153
EcoICRI	GAGCTC	1 cut(s)	625
EcoRI	GAATTC	2 cut(s)	415, 838
EcoRII	CCWGG	1 cut(s)	560
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	15, 627
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	2 cut(s)	631, 1130
FaqI	GGGAC	2 cut(s)	478, 770
FatI	CATG	2 cut(s)	627, 1126
FauNDI	CATATG	1 cut(s)	1199
FbaI	TGATCA	2 cut(s)	532, 862
Fnu4HI	GCNGC	2 cut(s)	72, 926
FokI	GGATG	2 cut(s)	590, 962
FriOI	GRGCYC	2 cut(s)	15, 627
Fsp4HI	GCNGC	2 cut(s)	72, 926
FspBI	CTAG	2 cut(s)	585, 1236
GluI	GCNGC	2 cut(s)	72, 926
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	87, 462
Hin1II	CATG	2 cut(s)	631, 1130
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	194, 251, 395, 511
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	87, 462
HphI	GGTGA	2 cut(s)	803, 1054
Hpy166II	GTNNAC	2 cut(s)	595, 1086
Hpy188III	TCNNGA	6 cut(s)	19, 130, 148, 677, 1025, 1225
Hpy8I	GTNNAC	2 cut(s)	595, 1086
HpyAV	CCTTC	5 cut(s)	226, 439, 682, 866, 925
HpyCH4III	ACNGT	4 cut(s)	349, 796, 1057, 1090
HpyCH4IV	ACGT	4 cut(s)	244, 597, 759, 1060
HpyCH4V	TGCA	9 cut(s)	71, 280, 606, 639, 662, 668, 920, 1153, 1213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 328
HpyF3I	CTNAG	5 cut(s)	157, 201, 323, 878, 1226
HpySE526I	ACGT	4 cut(s)	244, 597, 759, 1060
Hsp92II	CATG	2 cut(s)	631, 1130
Ksp22I	TGATCA	2 cut(s)	532, 862
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	532, 862
LmnI	GCTCC	4 cut(s)	161, 492, 622, 904
Lsp1109I	GCAGC	2 cut(s)	83, 937
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	2 cut(s)	585, 1236
MaeII	ACGT	4 cut(s)	244, 597, 759, 1060
MaeIII	GTNAC	4 cut(s)	16, 1030, 1042, 1192
MalI	GATC	2 cut(s)	534, 864
MboI	GATC	2 cut(s)	532, 862
MboII	GAAGA	3 cut(s)	145, 1151, 1237
MhlI	GDGCHC	2 cut(s)	15, 627
MmeI	TCCRAC	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	4 cut(s)	167, 594, 1116, 1255
MspI	CCGG	2 cut(s)	87, 462
MspR9I	CCNGG	2 cut(s)	463, 562
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	71, 328
NciI	CCSGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	1199
NdeII	GATC	2 cut(s)	532, 862
NlaIII	CATG	2 cut(s)	631, 1130
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	2 cut(s)	19, 205
NmuCI	GTSAC	3 cut(s)	16, 1030, 1042
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	194, 251, 395, 511
PflMI	CCANNNNNTGG	1 cut(s)	901
PkrI	GCNGC	2 cut(s)	73, 927
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	163
PsrI	GAACNNNNNNTAC	2 cut(s)	744, 776
PstI	CTGCAG	2 cut(s)	664, 922
RsaI	GTAC	3 cut(s)	1059, 1122, 1234
RsaNI	GTAC	3 cut(s)	1058, 1121, 1233
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	167, 594, 1116, 1255
SatI	GCNGC	2 cut(s)	72, 926
Sau3AI	GATC	2 cut(s)	532, 862
ScrFI	CCNGG	2 cut(s)	463, 562
SduI	GDGCHC	2 cut(s)	15, 627
SfaNI	GCATC	1 cut(s)	748
SfcI	CTRYAG	4 cut(s)	456, 660, 888, 918
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	585, 1236
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	461, 560
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	4 cut(s)	349, 796, 1057, 1090
TaiI	ACGT	4 cut(s)	247, 600, 762, 1063
TaqI	TCGA	4 cut(s)	361, 419, 543, 836
TatI	WGTACW	1 cut(s)	1120
TfiI	GAWTC	4 cut(s)	194, 251, 395, 511
Tru1I	TTAA	4 cut(s)	167, 594, 1116, 1255
Tru9I	TTAA	4 cut(s)	167, 594, 1116, 1255
TscAI	CASTG	7 cut(s)	613, 664, 675, 902, 1005, 1177, 1255
TseFI	GTSAC	3 cut(s)	16, 1030, 1042
TseI	GCWGC	2 cut(s)	71, 925
Tsp45I	GTSAC	3 cut(s)	16, 1030, 1042
TspDTI	ATGAA	6 cut(s)	691, 723, 885, 933, 975, 1115
TspGWI	ACGGA	1 cut(s)	1174
TspRI	CASTG	7 cut(s)	613, 664, 675, 902, 1005, 1177, 1255
Van91I	CCANNNNNTGG	1 cut(s)	901
XapI	RAATTY	5 cut(s)	31, 282, 415, 838, 1073
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	585, 1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.