AT1G59990

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22090226 .. 22093385
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59990.2

Sequence Viewer

Length: 1746 bp
ATGATTCTCTCACGCTCTGTCTCCGTGCTTCATTTGTGTGGAGTCTCTTCTTCAGCGCCGTCGAAGCTCTTATCTCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTTTCTTTCCGTTTAAGCTCTCTCAATCGATCTGATAGAAAATGGGTTCGTGGGTTTGCGTCTGCTACTGAAGCAGAAGTCGAGAAAAAGGGTAATGATACTTTTTTTGCTGACCATACCGTTTCTTGGAAGTCTCTTGGGTTATCAGATAATGTCTCTATAGCTCTTCGAGATTCTGGGTTCGATAGACCATCTCTTACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGTGATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGTTATCTTGCTCCAATAATTGATCAATTAACAAACACCGCTCTTGATTCCGAGGTTACGAATAGAGAGGAAAGACCGTTTCCGCTTAAGAATATCTCTCTTATTCTGTGTCCAAATGTGATGCTTTGTGAACAAGTGGTTCGGATGGTTAATGGTCTTGTTGATGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTGTGTGGATCTCAGGGTTGGCCAGATAGACTCCCTGATATAATTGTTTCGACACCTGCTGCTCTTCTTAATAATATTGAGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAATATGTGGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTTTGGCTAAATCCAATCTTGGCAGACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGATGATGCAGAATTCGATGAAGGATCTATTTCTGAGGAAGAGGATGAAGAAGAGGAAGAGGAATATCTTGATGATATAGCACAAATGCCTAGTGTTGAAGCTGAAGCTGGGTCAGATACTAAAAAGGGCTGGAGAAGAGTGAGAAAGATCTATACCCGTAGTAAGCAGTATATTTTCATTGCAGCCACACTTCCAGTTAACGGGAAGAAGACTGCCGGGGGAATTTTGAAACATATGTTTCAAGATGCTGTTTGGGTTAGCGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCAAAAATGGGTTGAAGTCACAGTAGACTCACAGGTTGATGCTCTTATAGAGGCTGTAAAAAACAATAACAACACCAACACAGAGAGGACAATGGTGTTTGCAAACACGGTCGAAGCTGTTGAAGCAGTGGCCGATATATTGGAGAAAGCTAGTATCCAGTGTTACCGTTATCACAAGAATCACAAGCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACTGGTGGTGTCTTTGTTTGCACTGATGCGGCTGCCCGTGGAGTTGATGTTCCTAATGTCTCACACGTTATTCAGGCGGATTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATTGGTCGAACAGCTAGAGCTGGGCAATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGTGAGATATTAA

Protein Analysis

581

Amino Acids

64.75

Weight (kDa)

5.8

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 107 - 271 3.1e-23 DEAD/DEAH box helicase
Helicase_C PF00271 409 - 518 9.3e-24 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 1215
AciI CCGC 5 cut(s) 435, 479, 1155, 1445, 1493
AclWI GGATC 2 cut(s) 610, 925
AcoI YGGCCR 2 cut(s) 614, 1320
AcsI RAATTY 3 cut(s) 698, 905, 1116
AcuI CTGAAG 4 cut(s) 36, 207, 1017, 1731
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 1 cut(s) 870
AfiI CCNNNNNNNGG 2 cut(s) 243, 1094
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 1480
AgsI TTSAA 8 cut(s) 85, 590, 992, 1123, 1136, 1205, 1313, 1705
AloI GAACNNNNNNTCC 2 cut(s) 1449, 1481
Alw26I GTCTC 8 cut(s) 25, 49, 94, 255, 277, 822, 1177, 1480
AlwI GGATC 2 cut(s) 610, 925
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 2 cut(s) 614, 1320
ApeKI GCWGC 5 cut(s) 368, 653, 793, 1076, 1448
ApoI RAATTY 3 cut(s) 698, 905, 1116
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 1 cut(s) 1160
BalI TGGCCA 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 1109
BbvI GCAGC 5 cut(s) 380, 640, 780, 1088, 1435
BccI CCATC 4 cut(s) 316, 535, 560, 1624
BceAI ACGGC 1 cut(s) 43
BciVI GTATCC 1 cut(s) 1355
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 8 cut(s) 25, 49, 94, 255, 277, 822, 1177, 1480
BfaI CTAG 6 cut(s) 884, 984, 1341, 1379, 1503, 1545
BfmI CTRYAG 2 cut(s) 276, 1509
BfoI RGCGCY 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 658
BfuI GTATCC 1 cut(s) 1355
BglII AGATCT 1 cut(s) 1041
BisI GCNGC 6 cut(s) 369, 654, 794, 1077, 1446, 1449
BlsI GCNGC 6 cut(s) 370, 655, 795, 1078, 1447, 1450
Bme1390I CCNGG 1 cut(s) 1111
BmiI GGNNCC 1 cut(s) 1725
BmrFI CCNGG 1 cut(s) 1111
BmsI GCATC 6 cut(s) 507, 850, 889, 1129, 1219, 1432
BpiI GAAGAC 1 cut(s) 1109
BpmI CTGGAG 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 1713
BpuMI CCSGG 1 cut(s) 1111
Bsa29I ATCGAT 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 4 cut(s) 447, 1110, 1453, 1584
BsaXI ACNNNNNCTCC 2 cut(s) 1449, 1479
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 1094
Bse1I ACTGG 6 cut(s) 382, 1088, 1348, 1423, 1572, 1640
Bse3DI GCAATG 1 cut(s) 1071
Bse8I GATNNNNATC 1 cut(s) 570
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 447, 1110, 1453, 1584
BseGI GGATG 3 cut(s) 546, 901, 943
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 2 cut(s) 243, 1094
BseMI GCAATG 1 cut(s) 1071
BseMII CTCAG 4 cut(s) 89, 332, 620, 918
BseNI ACTGG 6 cut(s) 382, 1088, 1348, 1423, 1572, 1640
BseRI GAGGAG 1 cut(s) 1736
BseXI GCAGC 5 cut(s) 380, 640, 780, 1088, 1435
BseYI CCCAGC 2 cut(s) 1001, 1550
Bsh1285I CGRYCG 1 cut(s) 1302
BshFI GGCC 2 cut(s) 616, 1322
BshVI ATCGAT 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 1302
BsiSI CCGG 1 cut(s) 1110
BslI CCNNNNNNNGG 2 cut(s) 243, 1094
BsmAI GTCTC 8 cut(s) 25, 49, 94, 255, 277, 822, 1177, 1480
BsmI GAATGC 1 cut(s) 1652
BsnI GGCC 2 cut(s) 616, 1322
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
BspACI CCGC 5 cut(s) 435, 479, 1155, 1445, 1493
BspANI GGCC 2 cut(s) 616, 1322
BspCNI CTCAG 4 cut(s) 88, 331, 619, 919
BspDI ATCGAT 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 1725
BspMAI CTGCAG 1 cut(s) 1513
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 610, 925
BspQI GCTCTTC 2 cut(s) 288, 663
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 1071
BsrI ACTGG 6 cut(s) 382, 1088, 1348, 1423, 1572, 1640
BssECI CCNNGG 4 cut(s) 447, 1110, 1453, 1584
BssMI GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
BssNI GRCGYC 1 cut(s) 691
Bst4CI ACNGT 9 cut(s) 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595
Bst6I CTCTTC 9 cut(s) 52, 288, 663, 927, 939, 945, 1024, 1658, 1685
BstACI GRCGYC 1 cut(s) 691
BstAFI CTTAAG 1 cut(s) 482
BstDEI CTNAG 5 cut(s) 75, 318, 581, 606, 927
BstDSI CCRYGG 1 cut(s) 1453
BstF5I GGATG 3 cut(s) 546, 901, 943
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 6 cut(s) 149, 421, 605, 883, 920, 1044
BstMAI GTCTC 8 cut(s) 25, 49, 94, 255, 277, 822, 1177, 1480
BstMBI GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
BstMCI CGRYCG 1 cut(s) 1302
BstMWI GCNNNNNNNGC 6 cut(s) 64, 188, 1313, 1499, 1508, 1715
BstSCI CCNGG 1 cut(s) 1109
BstSFI CTRYAG 2 cut(s) 276, 1509
BstV1I GCAGC 5 cut(s) 380, 640, 780, 1088, 1435
BstV2I GAAGAC 1 cut(s) 1109
BstX2I RGATCY 3 cut(s) 602, 917, 1041
BstYI RGATCY 3 cut(s) 602, 917, 1041
Bsu15I ATCGAT 1 cut(s) 145
BsuI GTATCC 1 cut(s) 1355
BsuRI GGCC 2 cut(s) 616, 1322
BsuTUI ATCGAT 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 1453
BtsCI GGATG 3 cut(s) 546, 901, 943
BtsI GCAGTG 3 cut(s) 1323, 1518, 1629
BtsIMutI CAGTG 6 cut(s) 1323, 1355, 1437, 1518, 1629, 1647
BveI ACCTGC 1 cut(s) 658
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 145
CseI GACGC 2 cut(s) 165, 680
Csp6I GTAC 1 cut(s) 869
CviAII CATG 1 cut(s) 395
CviQI GTAC 1 cut(s) 869
DdeI CTNAG 5 cut(s) 75, 318, 581, 606, 927
DpnI GATC 6 cut(s) 148, 420, 604, 882, 919, 1043
DpnII GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
EaeI YGGCCR 2 cut(s) 614, 1320
Eam1104I CTCTTC 9 cut(s) 52, 288, 663, 927, 939, 945, 1024, 1658, 1685
EarI CTCTTC 9 cut(s) 52, 288, 663, 927, 939, 945, 1024, 1658, 1685
EciI GGCGGA 1 cut(s) 1508
Eco31I GGTCTC 1 cut(s) 94
Eco57I CTGAAG 4 cut(s) 36, 207, 1017, 1731
EcoRI GAATTC 1 cut(s) 905
FaeI CATG 1 cut(s) 398
FatI CATG 1 cut(s) 394
FauNDI CATATG 1 cut(s) 1128
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 1215
Fnu4HI GCNGC 6 cut(s) 369, 654, 794, 1077, 1446, 1449
FokI GGATG 3 cut(s) 553, 908, 950
Fsp4HI GCNGC 6 cut(s) 369, 654, 794, 1077, 1446, 1449
FspBI CTAG 6 cut(s) 884, 984, 1341, 1379, 1503, 1545
GlaI GCGC 1 cut(s) 57
GluI GCNGC 6 cut(s) 369, 654, 794, 1077, 1446, 1449
GsaI CCCAGC 2 cut(s) 1005, 1554
GsuI CTGGAG 1 cut(s) 1045
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 616, 1322
HapII CCGG 1 cut(s) 1110
HgaI GACGC 2 cut(s) 165, 680
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 691
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 1093
HindII GTYRAC 1 cut(s) 1093
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 8 cut(s) 4, 42, 290, 443, 624, 766, 1217, 1369
HpaI GTTAAC 1 cut(s) 1093
HpaII CCGG 1 cut(s) 1110
HphI GGTGA 1 cut(s) 1160
Hpy166II GTNNAC 3 cut(s) 527, 1093, 1216
Hpy188III TCNNGA 8 cut(s) 199, 287, 440, 695, 763, 884, 962, 1136
Hpy8I GTNNAC 3 cut(s) 527, 1093, 1216
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 908, 1532
HpyCH4III ACNGT 9 cut(s) 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595
HpyCH4IV ACGT 2 cut(s) 1387, 1482
HpyCH4V TGCA 8 cut(s) 330, 368, 902, 1076, 1292, 1437, 1511, 1652
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 188, 1313, 1499, 1508, 1715
HpyF3I CTNAG 5 cut(s) 75, 318, 581, 606, 927
HpySE526I ACGT 2 cut(s) 1387, 1482
Hsp92I GRCGYC 1 cut(s) 691
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 1093
Kzo9I GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
LguI GCTCTTC 2 cut(s) 288, 663
LmnI GCTCC 2 cut(s) 412, 1723
Lsp1109I GCAGC 5 cut(s) 380, 640, 780, 1088, 1435
LweI GCATC 6 cut(s) 507, 850, 889, 1129, 1219, 1432
MaeI CTAG 6 cut(s) 884, 984, 1341, 1379, 1503, 1545
MaeII ACGT 2 cut(s) 1387, 1482
MaeIII GTNAC 4 cut(s) 451, 1207, 1352, 1567
MalI GATC 6 cut(s) 148, 420, 604, 882, 919, 1043
MbiI CCGCTC 1 cut(s) 437
MboI GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
MflI RGATCY 3 cut(s) 602, 917, 1041
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 7 cut(s) 414, 422, 636, 698, 876, 905, 1116
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 3 cut(s) 51, 618, 1211
Mox20I TGGCCA 1 cut(s) 616
MscI TGGCCA 1 cut(s) 616
MseI TTAA 8 cut(s) 131, 425, 483, 546, 663, 1092, 1686, 1744
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 616
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 1110
MspR9I CCNGG 1 cut(s) 1111
Mva1269I GAATGC 1 cut(s) 1652
MwoI GCNNNNNNNGC 6 cut(s) 64, 188, 1313, 1499, 1508, 1715
NciI CCSGG 1 cut(s) 1111
NdeI CATATG 1 cut(s) 1128
NdeII GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 1725
NmuCI GTSAC 2 cut(s) 1207, 1567
PaqCI CACCTGC 1 cut(s) 658
PciSI GCTCTTC 2 cut(s) 288, 663
PctI GAATGC 1 cut(s) 1652
PfeI GAWTC 5 cut(s) 4, 290, 443, 766, 1369
PkrI GCNGC 6 cut(s) 370, 655, 795, 1078, 1447, 1450
PleI GAGTC 3 cut(s) 50, 618, 1211
PpsI GAGTC 3 cut(s) 50, 618, 1211
PspFI CCCAGC 2 cut(s) 1001, 1550
PspN4I GGNNCC 1 cut(s) 1725
PstI CTGCAG 1 cut(s) 1513
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 3 cut(s) 602, 917, 1041
RsaI GTAC 1 cut(s) 870
RsaNI GTAC 1 cut(s) 869
RseI CAYNNNNRTG 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 288, 663
SaqAI TTAA 8 cut(s) 131, 425, 483, 546, 663, 1092, 1686, 1744
SatI GCNGC 6 cut(s) 369, 654, 794, 1077, 1446, 1449
Sau3AI GATC 6 cut(s) 146, 418, 602, 880, 917, 1041
SchI GAGTC 3 cut(s) 51, 618, 1211
ScrFI CCNGG 1 cut(s) 1111
SfaNI GCATC 6 cut(s) 507, 850, 889, 1129, 1219, 1432
SfcI CTRYAG 2 cut(s) 276, 1509
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 482, 1728
SmoI CTYRAG 2 cut(s) 482, 1728
Sse9I AATT 7 cut(s) 414, 422, 636, 698, 876, 905, 1116
SsiI CCGC 5 cut(s) 435, 479, 1155, 1445, 1493
SspI AATATT 1 cut(s) 670
SspMI CTAG 6 cut(s) 884, 984, 1341, 1379, 1503, 1545
StyD4I CCNGG 1 cut(s) 1109
TaaI ACNGT 9 cut(s) 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595
TaiI ACGT 2 cut(s) 1390, 1485
TasI AATT 7 cut(s) 414, 422, 636, 698, 876, 905, 1116
TauI GCSGC 1 cut(s) 1448
TfiI GAWTC 5 cut(s) 4, 290, 443, 766, 1369
Tru1I TTAA 8 cut(s) 131, 425, 483, 546, 663, 1092, 1686, 1744
Tru9I TTAA 8 cut(s) 131, 425, 483, 546, 663, 1092, 1686, 1744
TscAI CASTG 6 cut(s) 1323, 1355, 1444, 1518, 1629, 1647
TseFI GTSAC 2 cut(s) 1207, 1567
TseI GCWGC 5 cut(s) 368, 653, 793, 1076, 1448
Tsp45I GTSAC 2 cut(s) 1207, 1567
TspDTI ATGAA 7 cut(s) 20, 102, 576, 747, 927, 954, 1060
TspGWI ACGGA 4 cut(s) 13, 116, 767, 1604
TspRI CASTG 6 cut(s) 1323, 1355, 1444, 1518, 1629, 1647
Vha464I CTTAAG 1 cut(s) 482
XapI RAATTY 3 cut(s) 698, 905, 1116
XbaI TCTAGA 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 1215
XspI CTAG 6 cut(s) 884, 984, 1341, 1379, 1503, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.