DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G59990 AT1G59990 |
| fragaria_vesca | FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 |
| malus_domestica | MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1 |
| prunus_persica | Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1 |
| pyrus_communis | pycom16g07460 |
| rosa_chinensis | RchiOBHm_Chr4g0444581 |
| rosa_laevigata | RLG00000005820 |
| rosa_multiflora | Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00385030 |
| rosa_rugosa | Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100 |
| rosa_samantha | Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400 |
| rosa_wichuraiana | Rw4G035570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 658 |
| Acc36I | ACCTGC | 1 cut(s) | 658 |
| AccBSI | CCGCTC | 1 cut(s) | 437 |
| AccI | GTMKAC | 1 cut(s) | 1215 |
| AciI | CCGC | 5 cut(s) | 435, 479, 1155, 1445, 1493 |
| AclWI | GGATC | 2 cut(s) | 610, 925 |
| AcoI | YGGCCR | 2 cut(s) | 614, 1320 |
| AcsI | RAATTY | 3 cut(s) | 698, 905, 1116 |
| AcuI | CTGAAG | 4 cut(s) | 36, 207, 1017, 1731 |
| AcyI | GRCGYC | 1 cut(s) | 691 |
| AfaI | GTAC | 1 cut(s) | 870 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 243, 1094 |
| AflII | CTTAAG | 1 cut(s) | 482 |
| AflIII | ACRYGT | 1 cut(s) | 1480 |
| AgsI | TTSAA | 8 cut(s) | 85, 590, 992, 1123, 1136, 1205, 1313, 1705 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1449, 1481 |
| Alw26I | GTCTC | 8 cut(s) | 25, 49, 94, 255, 277, 822, 1177, 1480 |
| AlwI | GGATC | 2 cut(s) | 610, 925 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| AoxI | GGCC | 2 cut(s) | 614, 1320 |
| ApeKI | GCWGC | 5 cut(s) | 368, 653, 793, 1076, 1448 |
| ApoI | RAATTY | 3 cut(s) | 698, 905, 1116 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 708, 740 |
| AspLEI | GCGC | 1 cut(s) | 58 |
| AsuC2I | CCSGG | 1 cut(s) | 1111 |
| AsuHPI | GGTGA | 1 cut(s) | 1160 |
| BalI | TGGCCA | 1 cut(s) | 616 |
| BbsI | GAAGAC | 1 cut(s) | 1109 |
| BbvI | GCAGC | 5 cut(s) | 380, 640, 780, 1088, 1435 |
| BccI | CCATC | 4 cut(s) | 316, 535, 560, 1624 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BciVI | GTATCC | 1 cut(s) | 1355 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcnI | CCSGG | 1 cut(s) | 1111 |
| BcoDI | GTCTC | 8 cut(s) | 25, 49, 94, 255, 277, 822, 1177, 1480 |
| BfaI | CTAG | 6 cut(s) | 884, 984, 1341, 1379, 1503, 1545 |
| BfmI | CTRYAG | 2 cut(s) | 276, 1509 |
| BfoI | RGCGCY | 1 cut(s) | 59 |
| BfrI | CTTAAG | 1 cut(s) | 482 |
| BfuAI | ACCTGC | 1 cut(s) | 658 |
| BfuI | GTATCC | 1 cut(s) | 1355 |
| BglII | AGATCT | 1 cut(s) | 1041 |
| BisI | GCNGC | 6 cut(s) | 369, 654, 794, 1077, 1446, 1449 |
| BlsI | GCNGC | 6 cut(s) | 370, 655, 795, 1078, 1447, 1450 |
| Bme1390I | CCNGG | 1 cut(s) | 1111 |
| BmiI | GGNNCC | 1 cut(s) | 1725 |
| BmrFI | CCNGG | 1 cut(s) | 1111 |
| BmsI | GCATC | 6 cut(s) | 507, 850, 889, 1129, 1219, 1432 |
| BpiI | GAAGAC | 1 cut(s) | 1109 |
| BpmI | CTGGAG | 1 cut(s) | 1045 |
| BpuEI | CTTGAG | 1 cut(s) | 1713 |
| BpuMI | CCSGG | 1 cut(s) | 1111 |
| Bsa29I | ATCGAT | 1 cut(s) | 145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaHI | GRCGYC | 1 cut(s) | 691 |
| BsaI | GGTCTC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 4 cut(s) | 447, 1110, 1453, 1584 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1449, 1479 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 243, 1094 |
| Bse1I | ACTGG | 6 cut(s) | 382, 1088, 1348, 1423, 1572, 1640 |
| Bse3DI | GCAATG | 1 cut(s) | 1071 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseCI | ATCGAT | 1 cut(s) | 145 |
| BseDI | CCNNGG | 4 cut(s) | 447, 1110, 1453, 1584 |
| BseGI | GGATG | 3 cut(s) | 546, 901, 943 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 243, 1094 |
| BseMI | GCAATG | 1 cut(s) | 1071 |
| BseMII | CTCAG | 4 cut(s) | 89, 332, 620, 918 |
| BseNI | ACTGG | 6 cut(s) | 382, 1088, 1348, 1423, 1572, 1640 |
| BseRI | GAGGAG | 1 cut(s) | 1736 |
| BseXI | GCAGC | 5 cut(s) | 380, 640, 780, 1088, 1435 |
| BseYI | CCCAGC | 2 cut(s) | 1001, 1550 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1302 |
| BshFI | GGCC | 2 cut(s) | 616, 1322 |
| BshVI | ATCGAT | 1 cut(s) | 145 |
| BsiEI | CGRYCG | 1 cut(s) | 1302 |
| BsiSI | CCGG | 1 cut(s) | 1110 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 243, 1094 |
| BsmAI | GTCTC | 8 cut(s) | 25, 49, 94, 255, 277, 822, 1177, 1480 |
| BsmI | GAATGC | 1 cut(s) | 1652 |
| BsnI | GGCC | 2 cut(s) | 616, 1322 |
| Bso31I | GGTCTC | 1 cut(s) | 94 |
| Bsp143I | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| BspACI | CCGC | 5 cut(s) | 435, 479, 1155, 1445, 1493 |
| BspANI | GGCC | 2 cut(s) | 616, 1322 |
| BspCNI | CTCAG | 4 cut(s) | 88, 331, 619, 919 |
| BspDI | ATCGAT | 1 cut(s) | 145 |
| BspLI | GGNNCC | 1 cut(s) | 1725 |
| BspMAI | CTGCAG | 1 cut(s) | 1513 |
| BspMI | ACCTGC | 1 cut(s) | 658 |
| BspPI | GGATC | 2 cut(s) | 610, 925 |
| BspQI | GCTCTTC | 2 cut(s) | 288, 663 |
| BspTI | CTTAAG | 1 cut(s) | 482 |
| BspTNI | GGTCTC | 1 cut(s) | 94 |
| BsrBI | CCGCTC | 1 cut(s) | 437 |
| BsrDI | GCAATG | 1 cut(s) | 1071 |
| BsrI | ACTGG | 6 cut(s) | 382, 1088, 1348, 1423, 1572, 1640 |
| BssECI | CCNNGG | 4 cut(s) | 447, 1110, 1453, 1584 |
| BssMI | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| BssNI | GRCGYC | 1 cut(s) | 691 |
| Bst4CI | ACNGT | 9 cut(s) | 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595 |
| Bst6I | CTCTTC | 9 cut(s) | 52, 288, 663, 927, 939, 945, 1024, 1658, 1685 |
| BstACI | GRCGYC | 1 cut(s) | 691 |
| BstAFI | CTTAAG | 1 cut(s) | 482 |
| BstDEI | CTNAG | 5 cut(s) | 75, 318, 581, 606, 927 |
| BstDSI | CCRYGG | 1 cut(s) | 1453 |
| BstF5I | GGATG | 3 cut(s) | 546, 901, 943 |
| BstH2I | RGCGCY | 1 cut(s) | 59 |
| BstHHI | GCGC | 1 cut(s) | 58 |
| BstKTI | GATC | 6 cut(s) | 149, 421, 605, 883, 920, 1044 |
| BstMAI | GTCTC | 8 cut(s) | 25, 49, 94, 255, 277, 822, 1177, 1480 |
| BstMBI | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| BstMCI | CGRYCG | 1 cut(s) | 1302 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 64, 188, 1313, 1499, 1508, 1715 |
| BstSCI | CCNGG | 1 cut(s) | 1109 |
| BstSFI | CTRYAG | 2 cut(s) | 276, 1509 |
| BstV1I | GCAGC | 5 cut(s) | 380, 640, 780, 1088, 1435 |
| BstV2I | GAAGAC | 1 cut(s) | 1109 |
| BstX2I | RGATCY | 3 cut(s) | 602, 917, 1041 |
| BstYI | RGATCY | 3 cut(s) | 602, 917, 1041 |
| Bsu15I | ATCGAT | 1 cut(s) | 145 |
| BsuI | GTATCC | 1 cut(s) | 1355 |
| BsuRI | GGCC | 2 cut(s) | 616, 1322 |
| BsuTUI | ATCGAT | 1 cut(s) | 145 |
| BtgI | CCRYGG | 1 cut(s) | 1453 |
| BtsCI | GGATG | 3 cut(s) | 546, 901, 943 |
| BtsI | GCAGTG | 3 cut(s) | 1323, 1518, 1629 |
| BtsIMutI | CAGTG | 6 cut(s) | 1323, 1355, 1437, 1518, 1629, 1647 |
| BveI | ACCTGC | 1 cut(s) | 658 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| CfoI | GCGC | 1 cut(s) | 58 |
| ClaI | ATCGAT | 1 cut(s) | 145 |
| CseI | GACGC | 2 cut(s) | 165, 680 |
| Csp6I | GTAC | 1 cut(s) | 869 |
| CviAII | CATG | 1 cut(s) | 395 |
| CviQI | GTAC | 1 cut(s) | 869 |
| DdeI | CTNAG | 5 cut(s) | 75, 318, 581, 606, 927 |
| DpnI | GATC | 6 cut(s) | 148, 420, 604, 882, 919, 1043 |
| DpnII | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| EaeI | YGGCCR | 2 cut(s) | 614, 1320 |
| Eam1104I | CTCTTC | 9 cut(s) | 52, 288, 663, 927, 939, 945, 1024, 1658, 1685 |
| EarI | CTCTTC | 9 cut(s) | 52, 288, 663, 927, 939, 945, 1024, 1658, 1685 |
| EciI | GGCGGA | 1 cut(s) | 1508 |
| Eco31I | GGTCTC | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 4 cut(s) | 36, 207, 1017, 1731 |
| EcoRI | GAATTC | 1 cut(s) | 905 |
| FaeI | CATG | 1 cut(s) | 398 |
| FatI | CATG | 1 cut(s) | 394 |
| FauNDI | CATATG | 1 cut(s) | 1128 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| FblI | GTMKAC | 1 cut(s) | 1215 |
| Fnu4HI | GCNGC | 6 cut(s) | 369, 654, 794, 1077, 1446, 1449 |
| FokI | GGATG | 3 cut(s) | 553, 908, 950 |
| Fsp4HI | GCNGC | 6 cut(s) | 369, 654, 794, 1077, 1446, 1449 |
| FspBI | CTAG | 6 cut(s) | 884, 984, 1341, 1379, 1503, 1545 |
| GlaI | GCGC | 1 cut(s) | 57 |
| GluI | GCNGC | 6 cut(s) | 369, 654, 794, 1077, 1446, 1449 |
| GsaI | CCCAGC | 2 cut(s) | 1005, 1554 |
| GsuI | CTGGAG | 1 cut(s) | 1045 |
| HaeII | RGCGCY | 1 cut(s) | 59 |
| HaeIII | GGCC | 2 cut(s) | 616, 1322 |
| HapII | CCGG | 1 cut(s) | 1110 |
| HgaI | GACGC | 2 cut(s) | 165, 680 |
| HhaI | GCGC | 1 cut(s) | 58 |
| Hin1I | GRCGYC | 1 cut(s) | 691 |
| Hin1II | CATG | 1 cut(s) | 398 |
| Hin6I | GCGC | 1 cut(s) | 56 |
| HinP1I | GCGC | 1 cut(s) | 56 |
| HincII | GTYRAC | 1 cut(s) | 1093 |
| HindII | GTYRAC | 1 cut(s) | 1093 |
| HindIII | AAGCTT | 1 cut(s) | 757 |
| HinfI | GANTC | 8 cut(s) | 4, 42, 290, 443, 624, 766, 1217, 1369 |
| HpaI | GTTAAC | 1 cut(s) | 1093 |
| HpaII | CCGG | 1 cut(s) | 1110 |
| HphI | GGTGA | 1 cut(s) | 1160 |
| Hpy166II | GTNNAC | 3 cut(s) | 527, 1093, 1216 |
| Hpy188III | TCNNGA | 8 cut(s) | 199, 287, 440, 695, 763, 884, 962, 1136 |
| Hpy8I | GTNNAC | 3 cut(s) | 527, 1093, 1216 |
| Hpy99I | CGWCG | 1 cut(s) | 64 |
| HpyAV | CCTTC | 2 cut(s) | 908, 1532 |
| HpyCH4III | ACNGT | 9 cut(s) | 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595 |
| HpyCH4IV | ACGT | 2 cut(s) | 1387, 1482 |
| HpyCH4V | TGCA | 8 cut(s) | 330, 368, 902, 1076, 1292, 1437, 1511, 1652 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 64, 188, 1313, 1499, 1508, 1715 |
| HpyF3I | CTNAG | 5 cut(s) | 75, 318, 581, 606, 927 |
| HpySE526I | ACGT | 2 cut(s) | 1387, 1482 |
| Hsp92I | GRCGYC | 1 cut(s) | 691 |
| Hsp92II | CATG | 1 cut(s) | 398 |
| HspAI | GCGC | 1 cut(s) | 56 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| KspAI | GTTAAC | 1 cut(s) | 1093 |
| Kzo9I | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| LguI | GCTCTTC | 2 cut(s) | 288, 663 |
| LmnI | GCTCC | 2 cut(s) | 412, 1723 |
| Lsp1109I | GCAGC | 5 cut(s) | 380, 640, 780, 1088, 1435 |
| LweI | GCATC | 6 cut(s) | 507, 850, 889, 1129, 1219, 1432 |
| MaeI | CTAG | 6 cut(s) | 884, 984, 1341, 1379, 1503, 1545 |
| MaeII | ACGT | 2 cut(s) | 1387, 1482 |
| MaeIII | GTNAC | 4 cut(s) | 451, 1207, 1352, 1567 |
| MalI | GATC | 6 cut(s) | 148, 420, 604, 882, 919, 1043 |
| MbiI | CCGCTC | 1 cut(s) | 437 |
| MboI | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| MflI | RGATCY | 3 cut(s) | 602, 917, 1041 |
| MlsI | TGGCCA | 1 cut(s) | 616 |
| MluCI | AATT | 7 cut(s) | 414, 422, 636, 698, 876, 905, 1116 |
| MluNI | TGGCCA | 1 cut(s) | 616 |
| MlyI | GAGTC | 3 cut(s) | 51, 618, 1211 |
| Mox20I | TGGCCA | 1 cut(s) | 616 |
| MscI | TGGCCA | 1 cut(s) | 616 |
| MseI | TTAA | 8 cut(s) | 131, 425, 483, 546, 663, 1092, 1686, 1744 |
| MslI | CAYNNNNRTG | 1 cut(s) | 36 |
| Msp20I | TGGCCA | 1 cut(s) | 616 |
| MspCI | CTTAAG | 1 cut(s) | 482 |
| MspI | CCGG | 1 cut(s) | 1110 |
| MspR9I | CCNGG | 1 cut(s) | 1111 |
| Mva1269I | GAATGC | 1 cut(s) | 1652 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 64, 188, 1313, 1499, 1508, 1715 |
| NciI | CCSGG | 1 cut(s) | 1111 |
| NdeI | CATATG | 1 cut(s) | 1128 |
| NdeII | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| NlaIII | CATG | 1 cut(s) | 398 |
| NlaIV | GGNNCC | 1 cut(s) | 1725 |
| NmuCI | GTSAC | 2 cut(s) | 1207, 1567 |
| PaqCI | CACCTGC | 1 cut(s) | 658 |
| PciSI | GCTCTTC | 2 cut(s) | 288, 663 |
| PctI | GAATGC | 1 cut(s) | 1652 |
| PfeI | GAWTC | 5 cut(s) | 4, 290, 443, 766, 1369 |
| PkrI | GCNGC | 6 cut(s) | 370, 655, 795, 1078, 1447, 1450 |
| PleI | GAGTC | 3 cut(s) | 50, 618, 1211 |
| PpsI | GAGTC | 3 cut(s) | 50, 618, 1211 |
| PspFI | CCCAGC | 2 cut(s) | 1001, 1550 |
| PspN4I | GGNNCC | 1 cut(s) | 1725 |
| PstI | CTGCAG | 1 cut(s) | 1513 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PsuI | RGATCY | 3 cut(s) | 602, 917, 1041 |
| RsaI | GTAC | 1 cut(s) | 870 |
| RsaNI | GTAC | 1 cut(s) | 869 |
| RseI | CAYNNNNRTG | 1 cut(s) | 36 |
| SapI | GCTCTTC | 2 cut(s) | 288, 663 |
| SaqAI | TTAA | 8 cut(s) | 131, 425, 483, 546, 663, 1092, 1686, 1744 |
| SatI | GCNGC | 6 cut(s) | 369, 654, 794, 1077, 1446, 1449 |
| Sau3AI | GATC | 6 cut(s) | 146, 418, 602, 880, 917, 1041 |
| SchI | GAGTC | 3 cut(s) | 51, 618, 1211 |
| ScrFI | CCNGG | 1 cut(s) | 1111 |
| SfaNI | GCATC | 6 cut(s) | 507, 850, 889, 1129, 1219, 1432 |
| SfcI | CTRYAG | 2 cut(s) | 276, 1509 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 36 |
| SmlI | CTYRAG | 2 cut(s) | 482, 1728 |
| SmoI | CTYRAG | 2 cut(s) | 482, 1728 |
| Sse9I | AATT | 7 cut(s) | 414, 422, 636, 698, 876, 905, 1116 |
| SsiI | CCGC | 5 cut(s) | 435, 479, 1155, 1445, 1493 |
| SspI | AATATT | 1 cut(s) | 670 |
| SspMI | CTAG | 6 cut(s) | 884, 984, 1341, 1379, 1503, 1545 |
| StyD4I | CCNGG | 1 cut(s) | 1109 |
| TaaI | ACNGT | 9 cut(s) | 238, 336, 474, 1178, 1213, 1300, 1358, 1567, 1595 |
| TaiI | ACGT | 2 cut(s) | 1390, 1485 |
| TasI | AATT | 7 cut(s) | 414, 422, 636, 698, 876, 905, 1116 |
| TauI | GCSGC | 1 cut(s) | 1448 |
| TfiI | GAWTC | 5 cut(s) | 4, 290, 443, 766, 1369 |
| Tru1I | TTAA | 8 cut(s) | 131, 425, 483, 546, 663, 1092, 1686, 1744 |
| Tru9I | TTAA | 8 cut(s) | 131, 425, 483, 546, 663, 1092, 1686, 1744 |
| TscAI | CASTG | 6 cut(s) | 1323, 1355, 1444, 1518, 1629, 1647 |
| TseFI | GTSAC | 2 cut(s) | 1207, 1567 |
| TseI | GCWGC | 5 cut(s) | 368, 653, 793, 1076, 1448 |
| Tsp45I | GTSAC | 2 cut(s) | 1207, 1567 |
| TspDTI | ATGAA | 7 cut(s) | 20, 102, 576, 747, 927, 954, 1060 |
| TspGWI | ACGGA | 4 cut(s) | 13, 116, 767, 1604 |
| TspRI | CASTG | 6 cut(s) | 1323, 1355, 1444, 1518, 1629, 1647 |
| Vha464I | CTTAAG | 1 cut(s) | 482 |
| XapI | RAATTY | 3 cut(s) | 698, 905, 1116 |
| XbaI | TCTAGA | 1 cut(s) | 883 |
| XmiI | GTMKAC | 1 cut(s) | 1215 |
| XspI | CTAG | 6 cut(s) | 884, 984, 1341, 1379, 1503, 1545 |