Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6085698 .. 6088928

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1086600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGCTTCCGTTCTGTAAACTCTCCGCATCTCCGCCCAGATTACTGTCCCAATTCCGGCACTCCTTCTCTCTTCTCTCCAATTCTTCGTCTTCGTTTCGGATCAGCTTGCTCTGGCTCAGCCACCCTCGCCGTTTCGGAACTGCCACCACCGCCGCGTACCGGAAGGACGGCGGAGATACGTTTTTCACTGAAGAAAGCGTTTCGTGGACGTCCCTCGGCGTATCCGATAAGGTTTCTCAAGCTCTTTACAATGCCGGCCTTGGCCAACCGTCTCTGGTTCAGGCTGCTAGCATACCATCTATACTTTCAGGGAAGGATGTTGTTGTGGCAGCTGAAACTGGTAGTGGGAAAACGCACAGCTTCCTTGTCCCTTTAATTGATAAGCTGTGTAATGCCAATGAGCACGATGAGTCTGCGAATGTTGCTTCTTCTGATCAAGGAGTGTCCCAACCCCGAAAGATTTCTCTTGTTCTTTGTCCAAATGTGACACTTGCAGACCAAGTGGTTCGGATGGCCAACGGTCTTTGTGGCGAAAATGGCGAACCACTTCTAAGTGTTGTATCTCTTTGTGGGAGACAGGGATGGCCAGTTAATGAACCTGATATTATTGTTTCGACACCAGCTGCTCTTCTGAATAATATTGACCCAAAAAATTTCCGCCGTACGGATTTTATAAGGAGTGTAAAATATGTGGTATTTGATGAAGCGGATATGCTTCTCTCTGGGGGCTACCAGAATAAGGTTATCCGTCTCATACACATGCTCCGGTTTGATGAAAAGCTATTGTCACGGTCAAGTGAAGAGAATCCATCAGAACCCACTTCATCACATTTCAGTTCAGAAGATGAAGACGATCTTCAGACTGAAGACATATTTGAAGAAGAGGGAGATTCTGAGAAAGATGGTGACGTACATGAGGAGGTTGAGGCTGGGCACGTAAAAAGTTTAGACTGGAGGAGAGTGAGAAAAGTTTATAAGCGCAGTAAACAGTACATTTTTGTTGCAGCTACTCTTCCAGCGAATGGAAAGAGAACTGCCGGGGCAGTGTTGAAGAAGATGTTTCCAGAGGCCGATTGGGTTAGTGGAAACTACCTCCATTGCCACAACCCCAGATTGAAGCAAAGGTGGATTGAAGTTACTTTTGATACTCAGGTGGATGAACTTGTAAAGGCTGTGAAACATGGAATTGAGACGAGATCCGCTTCTGGTCAGTGCCGAACTATGGTGTTTGCAAATACTGTTGAGGCTGTGGAATCGGTGGCAAAGATATTGATGAGAGCTGGGATTGAATGTTACCAATACCATAAAGATTGCTCCTTGGAAGACCGTGCAAAGACATTGGTTGATTTCCAAGAGAAAGGTGGCATTCTCGTGTGCACTGATTCTGCCGCACGTGGTGTTGACATTCCAAATGTATCACATGTTATCCAGGCAGATTTTGCTACTTCTGCTGTGGACTTTATACACAGGGTTGGTCGCACAGCCAGAGCTGGTCAATATGGACTTGTGACTAGCATGTATACAGAATCTAACCGTGACCTGGTTGCTGCAGTTCGTAGAGCAGGAGAACTTGATCTGCCTGTGGAGACGGCATTTAGCAGGAAAAGAAGCTTTCGAAATAAGCTTAAGAAAAAAGGATTCATCATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

551

Amino Acids

60.86

Weight (kDa)

6.56

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	93 - 256	1e-24	DEAD/DEAH box helicase
Helicase_C	PF00271	401 - 498	1.5e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	674, 975
AatII	GACGTC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AccI	GTMKAC	1 cut(s)	1520
AccII	CGCG	1 cut(s)	155
AciI	CCGC	9 cut(s)	24, 32, 150, 153, 171, 658, 707, 1200, 1389
AclWI	GGATC	2 cut(s)	107, 1191
AcoI	YGGCCR	3 cut(s)	262, 513, 584
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	3 cut(s)	210, 842, 885
AcvI	CACGTG	1 cut(s)	1394
AcyI	GRCGYC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	1397
AfaI	GTAC	4 cut(s)	158, 664, 912, 992
AfiI	CCNNNNNNNGG	7 cut(s)	54, 159, 664, 739, 1022, 1222, 1540
AflII	CTTAAG	1 cut(s)	1625
AflIII	ACRYGT	1 cut(s)	1420
AgsI	TTSAA	5 cut(s)	878, 1051, 1117, 1133, 1289
AjnI	CCWGG	2 cut(s)	1428, 1539
Alw21I	GWGCWC	2 cut(s)	405, 1379
Alw26I	GTCTC	5 cut(s)	276, 568, 755, 1184, 1580
Alw44I	GTGCAC	1 cut(s)	1375
AlwI	GGATC	2 cut(s)	107, 1191
AoxI	GGCC	5 cut(s)	256, 262, 513, 584, 1068
ApaLI	GTGCAC	1 cut(s)	1375
ApeKI	GCWGC	5 cut(s)	284, 329, 623, 1004, 1547
ApoI	RAATTY	1 cut(s)	652
Asp700I	GAANNNNTTC	2 cut(s)	460, 546
AspLEI	GCGC	1 cut(s)	981
AsuC2I	CCSGG	1 cut(s)	1039
AsuHPI	GGTGA	1 cut(s)	917
AsuII	TTCGAA	1 cut(s)	1615
AsuNHI	GCTAGC	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	936, 1379
BaeI	ACNNNNGTAYC	2 cut(s)	1137, 1170
BalI	TGGCCA	3 cut(s)	264, 515, 586
BauI	CACGAG	1 cut(s)	1370
BbrPI	CACGTG	1 cut(s)	1394
BbsI	GAAGAC	4 cut(s)	81, 855, 873, 1329
Bbv12I	GWGCWC	2 cut(s)	405, 1379
BbvI	GCAGC	5 cut(s)	271, 341, 610, 1016, 1534
BccI	CCATC	5 cut(s)	304, 505, 576, 817, 896
BceAI	ACGGC	4 cut(s)	114, 184, 645, 1605
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	1430, 1541
BciVI	GTATCC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	1039
BcoDI	GTCTC	5 cut(s)	276, 568, 755, 1184, 1580
BfaI	CTAG	2 cut(s)	288, 1512
BfmI	CTRYAG	1 cut(s)	1548
BfrI	CTTAAG	1 cut(s)	1625
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	7 cut(s)	153, 285, 330, 624, 1005, 1389, 1548
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	7 cut(s)	154, 286, 331, 625, 1006, 1390, 1549
Bme1390I	CCNGG	3 cut(s)	1039, 1430, 1541
BmrFI	CCNGG	3 cut(s)	1039, 1430, 1541
BmsI	GCATC	1 cut(s)	35
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	4 cut(s)	81, 855, 873, 1329
BpmI	CTGGAG	1 cut(s)	973
Bpu1102I	GCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	1615
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	1039
BsaAI	YACGTR	2 cut(s)	937, 1394
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	214, 259, 1038, 1317
BsaWI	WCCGGW	2 cut(s)	159, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 159, 664, 739, 1022, 1222, 1540
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	343, 587, 956
Bse3DI	GCAATG	1 cut(s)	1096
BseBI	CCWGG	2 cut(s)	1430, 1541
BseDI	CCNNGG	4 cut(s)	214, 259, 1038, 1317
BseGI	GGATG	4 cut(s)	322, 516, 587, 1162
BseLI	CCNNNNNNNGG	7 cut(s)	54, 159, 664, 739, 1022, 1222, 1540
BseMI	GCAATG	1 cut(s)	1096
BseMII	CTCAG	3 cut(s)	130, 885, 1163
BseNI	ACTGG	3 cut(s)	343, 587, 956
BseRI	GAGGAG	2 cut(s)	932, 970
BseSI	GKGCMC	2 cut(s)	936, 1379
BseXI	GCAGC	5 cut(s)	271, 341, 610, 1016, 1534
BseYI	CCCAGC	2 cut(s)	929, 1280
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	5 cut(s)	258, 264, 515, 586, 1070
BsiHKAI	GWGCWC	2 cut(s)	405, 1379
BsiSI	CCGG	5 cut(s)	55, 160, 255, 766, 1038
BsiWI	CGTACG	1 cut(s)	662
BslFI	GGGAC	4 cut(s)	31, 196, 353, 430
BslI	CCNNNNNNNGG	7 cut(s)	54, 159, 664, 739, 1022, 1222, 1540
BsmAI	GTCTC	5 cut(s)	276, 568, 755, 1184, 1580
BsmBI	CGTCTC	4 cut(s)	276, 755, 1184, 1580
BsmFI	GGGAC	4 cut(s)	31, 196, 353, 430
BsmI	GAATGC	1 cut(s)	1365
BsnI	GGCC	5 cut(s)	258, 264, 515, 586, 1070
Bsp119I	TTCGAA	1 cut(s)	1615
Bsp1286I	GDGCHC	3 cut(s)	405, 936, 1379
Bsp143I	GATC	5 cut(s)	99, 433, 853, 1196, 1573
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	9 cut(s)	24, 32, 150, 153, 171, 658, 707, 1200, 1389
BspANI	GGCC	5 cut(s)	258, 264, 515, 586, 1070
BspCNI	CTCAG	3 cut(s)	129, 886, 1162
BspFNI	CGCG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	1552
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	107, 1191
BspQI	GCTCTTC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	1615
BspTI	CTTAAG	1 cut(s)	1625
BsrDI	GCAATG	1 cut(s)	1096
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	343, 587, 956
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	214, 259, 1038, 1317
BssMI	GATC	5 cut(s)	99, 433, 853, 1196, 1573
BssNAI	GTATAC	1 cut(s)	1521
BssNI	GRCGYC	1 cut(s)	209
BssSI	CACGAG	1 cut(s)	1370
BssT1I	CCWWGG	2 cut(s)	259, 1317
Bst1107I	GTATAC	1 cut(s)	1521
Bst2BI	CACGAG	1 cut(s)	1370
Bst2UI	CCWGG	2 cut(s)	1430, 1541
Bst4CI	ACNGT	8 cut(s)	45, 270, 521, 792, 990, 1240, 1328, 1535
Bst6I	CTCTTC	5 cut(s)	75, 633, 795, 876, 1017
BstACI	GRCGYC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	1625
BstAPI	GCANNNNNTGC	1 cut(s)	1439
BstBAI	YACGTR	2 cut(s)	937, 1394
BstBI	TTCGAA	1 cut(s)	1615
BstC8I	GCNNGC	3 cut(s)	107, 256, 289
BstDEI	CTNAG	4 cut(s)	116, 551, 894, 1149
BstF5I	GGATG	4 cut(s)	322, 516, 587, 1162
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	5 cut(s)	102, 436, 856, 1199, 1576
BstMAI	GTCTC	5 cut(s)	276, 568, 755, 1184, 1580
BstMBI	GATC	5 cut(s)	99, 433, 853, 1196, 1573
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 149, 422, 537, 1439, 1448
BstNI	CCWGG	2 cut(s)	1430, 1541
BstNSI	RCATGY	3 cut(s)	763, 1424, 1519
BstSCI	CCNGG	3 cut(s)	1037, 1428, 1539
BstSFI	CTRYAG	1 cut(s)	1548
BstSLI	GKGCMC	2 cut(s)	936, 1379
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	5 cut(s)	271, 341, 610, 1016, 1534
BstV2I	GAAGAC	4 cut(s)	81, 855, 873, 1329
BstX2I	RGATCY	1 cut(s)	1196
BstYI	RGATCY	1 cut(s)	1196
BstZ17I	GTATAC	1 cut(s)	1521
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	5 cut(s)	258, 264, 515, 586, 1070
BtsCI	GGATG	4 cut(s)	322, 516, 587, 1162
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	4 cut(s)	186, 1050, 1217, 1377
Cac8I	GCNNGC	3 cut(s)	107, 256, 289
CfoI	GCGC	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	1539
Csp6I	GTAC	4 cut(s)	157, 663, 911, 991
CviAII	CATG	5 cut(s)	760, 914, 1181, 1421, 1516
CviQI	GTAC	4 cut(s)	157, 663, 911, 991
DdeI	CTNAG	4 cut(s)	116, 551, 894, 1149
DpnI	GATC	5 cut(s)	101, 435, 855, 1198, 1575
DpnII	GATC	5 cut(s)	99, 433, 853, 1196, 1573
DraIII	CACNNNGTG	1 cut(s)	1397
EaeI	YGGCCR	3 cut(s)	262, 513, 584
Eam1104I	CTCTTC	5 cut(s)	75, 633, 795, 876, 1017
EarI	CTCTTC	5 cut(s)	75, 633, 795, 876, 1017
EciI	GGCGGA	3 cut(s)	21, 186, 647
Eco130I	CCWWGG	2 cut(s)	259, 1317
Eco57I	CTGAAG	3 cut(s)	210, 842, 885
Eco72I	CACGTG	1 cut(s)	1394
EcoRII	CCWGG	2 cut(s)	1428, 1539
EcoT14I	CCWWGG	2 cut(s)	259, 1317
ErhI	CCWWGG	2 cut(s)	259, 1317
Esp3I	CGTCTC	4 cut(s)	276, 755, 1184, 1580
FaeI	CATG	5 cut(s)	763, 917, 1184, 1424, 1519
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	4 cut(s)	31, 196, 353, 430
FatI	CATG	5 cut(s)	759, 913, 1180, 1420, 1515
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	1520
Fnu4HI	GCNGC	7 cut(s)	153, 285, 330, 624, 1005, 1389, 1548
FokI	GGATG	4 cut(s)	329, 523, 594, 1169
Fsp4HI	GCNGC	7 cut(s)	153, 285, 330, 624, 1005, 1389, 1548
FspBI	CTAG	2 cut(s)	288, 1512
GlaI	GCGC	1 cut(s)	980
GluI	GCNGC	7 cut(s)	153, 285, 330, 624, 1005, 1389, 1548
GsaI	CCCAGC	2 cut(s)	933, 1284
GsuI	CTGGAG	1 cut(s)	973
HaeIII	GGCC	5 cut(s)	258, 264, 515, 586, 1070
HapII	CCGG	5 cut(s)	55, 160, 255, 766, 1038
HhaI	GCGC	1 cut(s)	981
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	763, 917, 1184, 1424, 1519
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HincII	GTYRAC	1 cut(s)	1402
HindII	GTYRAC	1 cut(s)	1402
HindIII	AAGCTT	2 cut(s)	1609, 1622
HinfI	GANTC	7 cut(s)	410, 805, 890, 1253, 1382, 1526, 1638
HpaII	CCGG	5 cut(s)	55, 160, 255, 766, 1038
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	7 cut(s)	17, 207, 986, 1377, 1402, 1456, 1521
Hpy188III	TCNNGA	1 cut(s)	1064
Hpy8I	GTNNAC	7 cut(s)	17, 207, 986, 1377, 1402, 1456, 1521
HpyAV	CCTTC	3 cut(s)	73, 157, 307
HpyCH4III	ACNGT	8 cut(s)	45, 270, 521, 792, 990, 1240, 1328, 1535
HpyCH4IV	ACGT	5 cut(s)	179, 209, 909, 936, 1393
HpyCH4V	TGCA	6 cut(s)	494, 1004, 1232, 1331, 1377, 1550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 149, 422, 537, 1439, 1448
HpyF3I	CTNAG	4 cut(s)	116, 551, 894, 1149
HpySE526I	ACGT	5 cut(s)	179, 209, 909, 936, 1393
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	763, 917, 1184, 1424, 1519
HspAI	GCGC	1 cut(s)	979
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	99, 433, 853, 1196, 1573
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	2 cut(s)	768, 1319
Lsp1109I	GCAGC	5 cut(s)	271, 341, 610, 1016, 1534
LweI	GCATC	1 cut(s)	35
MabI	ACCWGGT	1 cut(s)	1539
MaeI	CTAG	2 cut(s)	288, 1512
MaeII	ACGT	5 cut(s)	179, 209, 909, 936, 1393
MaeIII	GTNAC	7 cut(s)	484, 786, 905, 1135, 1292, 1507, 1535
MalI	GATC	5 cut(s)	101, 435, 855, 1198, 1575
MboI	GATC	5 cut(s)	99, 433, 853, 1196, 1573
MflI	RGATCY	1 cut(s)	1196
MhlI	GDGCHC	3 cut(s)	405, 936, 1379
MlsI	TGGCCA	3 cut(s)	264, 515, 586
MluCI	AATT	5 cut(s)	50, 79, 375, 652, 1185
MluNI	TGGCCA	3 cut(s)	264, 515, 586
MlyI	GAGTC	1 cut(s)	419
Mox20I	TGGCCA	3 cut(s)	264, 515, 586
MroNI	GCCGGC	1 cut(s)	254
MroXI	GAANNNNTTC	2 cut(s)	460, 546
MscI	TGGCCA	3 cut(s)	264, 515, 586
MseI	TTAA	3 cut(s)	374, 591, 1626
MslI	CAYNNNNRTG	2 cut(s)	758, 1370
Msp20I	TGGCCA	3 cut(s)	264, 515, 586
MspA1I	CMGCKG	2 cut(s)	332, 623
MspCI	CTTAAG	1 cut(s)	1625
MspI	CCGG	5 cut(s)	55, 160, 255, 766, 1038
MspR9I	CCNGG	3 cut(s)	1039, 1430, 1541
Mva1269I	GAATGC	1 cut(s)	1365
MvaI	CCWGG	2 cut(s)	1430, 1541
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	6 cut(s)	126, 149, 422, 537, 1439, 1448
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	1039
NdeII	GATC	5 cut(s)	99, 433, 853, 1196, 1573
NgoMIV	GCCGGC	1 cut(s)	254
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	763, 917, 1184, 1424, 1519
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	5 cut(s)	484, 786, 905, 1507, 1535
NspI	RCATGY	3 cut(s)	763, 1424, 1519
NspV	TTCGAA	1 cut(s)	1615
PciI	ACATGT	1 cut(s)	1420
PciSI	GCTCTTC	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	1365
PdiI	GCCGGC	1 cut(s)	256
PdmI	GAANNNNTTC	2 cut(s)	460, 546
PfeI	GAWTC	6 cut(s)	805, 890, 1253, 1382, 1526, 1638
Pfl23II	CGTACG	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	7 cut(s)	154, 286, 331, 625, 1006, 1390, 1549
PleI	GAGTC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	1394
PmlI	CACGTG	1 cut(s)	1394
PpsI	GAGTC	1 cut(s)	418
Ppu21I	YACGTR	2 cut(s)	937, 1394
PscI	ACATGT	1 cut(s)	1420
PsiI	TTATAA	2 cut(s)	674, 975
Psp6I	CCWGG	2 cut(s)	1428, 1539
PspCI	CACGTG	1 cut(s)	1394
PspFI	CCCAGC	2 cut(s)	929, 1280
PspGI	CCWGG	2 cut(s)	1428, 1539
PspLI	CGTACG	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	1552
PsuI	RGATCY	1 cut(s)	1196
PvuII	CAGCTG	2 cut(s)	332, 623
RsaI	GTAC	4 cut(s)	158, 664, 912, 992
RsaNI	GTAC	4 cut(s)	157, 663, 911, 991
RseI	CAYNNNNRTG	2 cut(s)	758, 1370
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	374, 591, 1626
SatI	GCNGC	7 cut(s)	153, 285, 330, 624, 1005, 1389, 1548
Sau3AI	GATC	5 cut(s)	99, 433, 853, 1196, 1573
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	1039, 1430, 1541
SduI	GDGCHC	3 cut(s)	405, 936, 1379
SexAI	ACCWGGT	1 cut(s)	1539
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	1548
SfuI	TTCGAA	1 cut(s)	1615
SmiMI	CAYNNNNRTG	2 cut(s)	758, 1370
SmlI	CTYRAG	2 cut(s)	237, 1625
SmoI	CTYRAG	2 cut(s)	237, 1625
Sse9I	AATT	5 cut(s)	50, 79, 375, 652, 1185
SsiI	CCGC	9 cut(s)	24, 32, 150, 153, 171, 658, 707, 1200, 1389
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	2 cut(s)	288, 1512
StyD4I	CCNGG	3 cut(s)	1037, 1428, 1539
StyI	CCWWGG	2 cut(s)	259, 1317
TaaI	ACNGT	8 cut(s)	45, 270, 521, 792, 990, 1240, 1328, 1535
TaiI	ACGT	5 cut(s)	182, 212, 912, 939, 1396
TaqI	TCGA	3 cut(s)	614, 1615, 1647
TasI	AATT	5 cut(s)	50, 79, 375, 652, 1185
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	2 cut(s)	155, 1391
TfiI	GAWTC	6 cut(s)	805, 890, 1253, 1382, 1526, 1638
Tru1I	TTAA	3 cut(s)	374, 591, 1626
Tru9I	TTAA	3 cut(s)	374, 591, 1626
TscAI	CASTG	4 cut(s)	193, 1050, 1217, 1384
TseFI	GTSAC	5 cut(s)	484, 786, 905, 1507, 1535
TseI	GCWGC	5 cut(s)	284, 329, 623, 1004, 1547
Tsp45I	GTSAC	5 cut(s)	484, 786, 905, 1507, 1535
TspDTI	ATGAA	7 cut(s)	609, 717, 789, 813, 861, 1173, 1630
TspGWI	ACGGA	2 cut(s)	680, 737
TspRI	CASTG	4 cut(s)	193, 1050, 1217, 1384
Van91I	CCANNNNNTGG	1 cut(s)	1022
Vha464I	CTTAAG	1 cut(s)	1625
VneI	GTGCAC	1 cut(s)	1375
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	3 cut(s)	763, 1424, 1519
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1071, 1358
XmiI	GTMKAC	1 cut(s)	1520
XmnI	GAANNNNTTC	2 cut(s)	460, 546
XspI	CTAG	2 cut(s)	288, 1512
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.