Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

52613492 .. 52620340

Gene Structure 6849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGCCTAATGGCCATAGGAGAACGAGGAGGAAGGATGGTTATATTCAAGAAAATGGTGACACGAGTCAGTCAAATGTAGGCGAAGAACTGGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATTTCAATGTTACTTATTGGTGCATGTTTTCTTATTTGGGTAAGTGGAGCCTTAGATCCCGAAAGCAGTGCATCTGGAGACCTTGTTGCATCTGTAAAAAGGGGTGTATGGGCGATGATAGCAGTTTTTCTTGCTTATTGCTTGCTCCAAGCCCCATCTACGGTTCTTATCAGACCGCATCCTGCAATTTGGCGGTTAGTTCACGGAATGGCTGTTGTTTACCTAGTTGCTCTTACATTTGTACTTTTTCAGAAGCGTGATGATGCTCGGCAGTTCATGAAGTTTCTGCATCCTGATCTTGGTGTTGAACTCCCGGAAAGATCTTATGGTGCTGATTGTCGTATATATTTGCCTGATAATCCTAAAAGCAGGTTTAAGAATGTTTATGAAACACTTTTTGATGAATTTGTTGTCGCTCATATAATTGGGTGGTGGGGAAAAGCTATATTGATCCGTAATCAGCCCCTTTTGTGGGTGCTTTCAATTGGATTTGAGTTGATGGAGCTTACCTTCCGTCATATGTTACCAAATTTCAATGAATGCTGGTGGGATAGTATTATTCTTGACATTTTGATCTGCAACTGGTTTGGTATCTGGGCAGGAATGCATACTGTTAGGTACTTTGATGGAAAAACATACAAGTGGGTCGGTCTAAGTCGTCAACCCAATATTATTGGAAAAGTGAAACGAACTCTGGGACAATTTACACCAGCTCAGTGGGACAAAGATGAGTGGCATCCATTACTTGGTCCATGGCGTTTCGTTCAAGTCATCACTCTTTGCATAGTATTCATGACTGTAGAGCTTAATACATTCTTTTTAAAGTTCTGTCTATGGATTCCTCCCCGCAACCCTGTGATTGTATATAGGTTGATCTTGTGGTGGCTAATTGCAATTCCAACAATTCGCGAGTACAATTCATACCTTCAAGACCGGAAACCAGTGAAGAAGGTTGGAGCATTTTGTTGGCTTTCTGTTGCTATTTGCATTGTTGAACTTCTCATTTGCATCAAGTTTGGACATGGATTATATCCGAAACCAATGCCATTATGGCTGGTAGTGTTTTGGATGTCTGTTGGAGCGGCACTTGTAATATTTTTGATTGTTTGGTCTTGGCAATTGCATCGAACTCTAGGGAGAAAGAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

426

Amino Acids

49.69

Weight (kDa)

9.35

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	102 - 383	6.9e-114	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	1211
AccII	CGCG	1 cut(s)	1038
AciI	CCGC	4 cut(s)	305, 322, 976, 1211
AclWI	GGATC	4 cut(s)	89, 102, 179, 574
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	533, 658
AfaI	GTAC	3 cut(s)	372, 749, 1043
AfiI	CCNNNNNNNGG	5 cut(s)	289, 428, 600, 601, 875
AgsI	TTSAA	8 cut(s)	50, 135, 437, 612, 664, 896, 1058, 1124
AluBI	AGCT	4 cut(s)	572, 634, 842, 934
AluI	AGCT	4 cut(s)	572, 634, 842, 934
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	4 cut(s)	89, 102, 179, 574
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	533, 658
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	64
BccI	CCATC	4 cut(s)	32, 292, 622, 749
BcgI	CGANNNNNNTGC	6 cut(s)	179, 213, 1153, 1187, 1235, 1269
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	353, 1262
BfmI	CTRYAG	1 cut(s)	927
BfuAI	ACCTGC	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	1180
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	1212
BlsI	GCNGC	1 cut(s)	1213
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	3 cut(s)	6, 96, 178
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
BoxI	GACNNNNGTC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	98, 881
BsaWI	WCCGGW	1 cut(s)	1062
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	5 cut(s)	289, 428, 600, 601, 875
Bse1I	ACTGG	3 cut(s)	96, 716, 1070
BseDI	CCNNGG	2 cut(s)	98, 881
BseGI	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BseLI	CCNNNNNNNGG	5 cut(s)	289, 428, 600, 601, 875
BseMII	CTCAG	1 cut(s)	857
BseNI	ACTGG	3 cut(s)	96, 716, 1070
BseRI	GAGGAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	1038
BshFI	GGCC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	443, 1063
BslFI	GGGAC	2 cut(s)	840, 863
BslI	CCNNNNNNNGG	5 cut(s)	289, 428, 600, 601, 875
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	840, 863
BsmI	GAATGC	2 cut(s)	674, 738
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
Bsp19I	CCATGG	2 cut(s)	98, 881
Bsp68I	TCGCGA	1 cut(s)	1038
BspACI	CCGC	4 cut(s)	305, 322, 976, 1211
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	1038
BspHI	TCATGA	2 cut(s)	405, 921
BspLI	GGNNCC	3 cut(s)	6, 96, 178
BspMI	ACCTGC	2 cut(s)	489, 732
BspPI	GGATC	4 cut(s)	89, 102, 179, 574
BspTNI	GGTCTC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	1211
BsrI	ACTGG	3 cut(s)	96, 716, 1070
BssECI	CCNNGG	2 cut(s)	98, 881
BssMI	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
BssSI	CACGAG	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	98, 881
Bst2BI	CACGAG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	292, 742, 928
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	181, 782, 843
BstDSI	CCRYGG	2 cut(s)	98, 881
BstF5I	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BstFNI	CGCG	1 cut(s)	1038
BstKTI	GATC	7 cut(s)	97, 187, 427, 452, 582, 705, 1005
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 1180
BstNSI	RCATGY	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	1 cut(s)	1038
BstX2I	RGATCY	3 cut(s)	94, 184, 449
BstXI	CCANNNNNNTGG	1 cut(s)	846
BstYI	RGATCY	3 cut(s)	94, 184, 449
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	2 cut(s)	98, 881
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	5 cut(s)	43, 307, 418, 865, 1203
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	202, 851, 1077
BtuMI	TCGCGA	1 cut(s)	1038
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	2 cut(s)	405, 921
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	371, 748, 1042
CviAII	CATG	7 cut(s)	99, 108, 153, 406, 882, 922, 1151
CviQI	GTAC	3 cut(s)	371, 748, 1042
DdeI	CTNAG	3 cut(s)	181, 782, 843
DpnI	GATC	7 cut(s)	96, 186, 426, 451, 581, 704, 1004
DpnII	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
DraI	TTTAAA	1 cut(s)	951
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	98, 881
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	878
EcoT14I	CCWWGG	2 cut(s)	98, 881
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	98, 881
FaeI	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
FaqI	GGGAC	2 cut(s)	840, 863
FatI	CATG	7 cut(s)	98, 107, 152, 405, 881, 921, 1150
FauI	CCCGC	1 cut(s)	983
FauNDI	CATATG	1 cut(s)	648
Fnu4HI	GCNGC	1 cut(s)	1212
FokI	GGATG	5 cut(s)	50, 294, 405, 852, 1210
Fsp4HI	GCNGC	1 cut(s)	1212
FspBI	CTAG	2 cut(s)	353, 1262
GluI	GCNGC	1 cut(s)	1212
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	443, 1063
Hin1II	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
HincII	GTYRAC	1 cut(s)	791
HindII	GTYRAC	1 cut(s)	791
HinfI	GANTC	2 cut(s)	67, 967
HpaII	CCGG	2 cut(s)	443, 1063
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	331, 349, 791
Hpy188I	TCNGA	3 cut(s)	302, 381, 1164
Hpy188III	TCNNGA	9 cut(s)	50, 188, 204, 406, 422, 692, 922, 1037, 1058
Hpy8I	GTNNAC	3 cut(s)	331, 349, 791
HpyAV	CCTTC	4 cut(s)	28, 649, 1064, 1072
HpyCH4III	ACNGT	3 cut(s)	292, 742, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 1180
HpyF3I	CTNAG	3 cut(s)	181, 782, 843
Hsp92II	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
Kzo9I	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
LmnI	GCTCC	6 cut(s)	4, 176, 279, 631, 1085, 1208
LweI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
MaeI	CTAG	2 cut(s)	353, 1262
MaeIII	GTNAC	3 cut(s)	59, 138, 651
MalI	GATC	7 cut(s)	96, 186, 426, 451, 581, 704, 1004
MbiI	CCGCTC	1 cut(s)	1211
MboI	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
MboII	GAAGA	2 cut(s)	98, 1087
MfeI	CAATTG	2 cut(s)	612, 1247
MflI	RGATCY	3 cut(s)	94, 184, 449
MlsI	TGGCCA	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	3 cut(s)	1052, 1063, 1186
MnlI	CCTC	5 cut(s)	21, 24, 132, 981, 1266
Mox20I	TGGCCA	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	3 cut(s)	504, 936, 950
MslI	CAYNNNNRTG	2 cut(s)	134, 769
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	2 cut(s)	443, 1063
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	2 cut(s)	612, 1247
Mva1269I	GAATGC	2 cut(s)	674, 738
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	2 cut(s)	248, 1180
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	2 cut(s)	98, 881
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
NlaIII	CATG	7 cut(s)	102, 111, 156, 409, 885, 925, 1154
NlaIV	GGNNCC	3 cut(s)	6, 96, 178
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	59
NruI	TCGCGA	1 cut(s)	1038
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	1 cut(s)	156
PagI	TCATGA	2 cut(s)	405, 921
PctI	GAATGC	2 cut(s)	674, 738
PfeI	GAWTC	1 cut(s)	967
PflMI	CCANNNNNTGG	1 cut(s)	875
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	1213
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	6, 96, 178
PspPI	GGNCC	1 cut(s)	878
PsuI	RGATCY	3 cut(s)	94, 184, 449
RruI	TCGCGA	1 cut(s)	1038
RsaI	GTAC	3 cut(s)	372, 749, 1043
RsaNI	GTAC	3 cut(s)	371, 748, 1042
RseI	CAYNNNNRTG	2 cut(s)	134, 769
SaqAI	TTAA	3 cut(s)	504, 936, 950
SatI	GCNGC	1 cut(s)	1212
Sau3AI	GATC	7 cut(s)	94, 184, 424, 449, 579, 702, 1002
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	443
SfaNI	GCATC	8 cut(s)	209, 227, 316, 382, 427, 874, 1146, 1261
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	2 cut(s)	134, 769
SsiI	CCGC	4 cut(s)	305, 322, 976, 1211
SspI	AATATT	2 cut(s)	799, 1224
SspMI	CTAG	2 cut(s)	353, 1262
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	98, 881
TaaI	ACNGT	3 cut(s)	292, 742, 928
TaqI	TCGA	1 cut(s)	1255
TaqII	GACCGA	1 cut(s)	767
TatI	WGTACW	2 cut(s)	370, 1041
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	1 cut(s)	967
Tru1I	TTAA	3 cut(s)	504, 936, 950
Tru9I	TTAA	3 cut(s)	504, 936, 950
TscAI	CASTG	3 cut(s)	202, 851, 1077
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	7 cut(s)	394, 422, 531, 546, 681, 910, 1038
TspGWI	ACGGA	3 cut(s)	348, 572, 632
TspRI	CASTG	3 cut(s)	202, 851, 1077
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	2 cut(s)	533, 658
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	105, 1176
XspI	CTAG	2 cut(s)	353, 1262
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.