Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

4875835 .. 4876419

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCCAACGGACCAAAATGTATCACACGGCTGTGAAACATGGAATTGAGACGAGATCAGCTTCTGGTCAGTGCGGAACAATGGTGTTTGCAAATACTGTTGAGGCTGTGGAATCGGTAGCAAAGATATTGAAGAGAGCTGGAATGGAATGTTACCGATACCATAAAGATTGCTCCTTGGAAGACCGTGCAAAGACATTGGTTGATTTTCAAGAGAAAGGTGGCATTTTTGCATGCACTGATTCTGCCGCACGTGGCGTTGACATTCCAAATGTATCACACGTTATCCAGGCGGATTTTGCTACTTCTGCCGTGGACTTTATACACAGGGTTGGTCGCACAGCCAGAGCTGGTCAGTATGGACTTGTGACTAGCATGGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

129

Amino Acids

13.95

Weight (kDa)

8.75

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 249, 293
AcvI	CACGTG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	133, 212
AjnI	CCWGG	1 cut(s)	288
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	62, 140, 350
AluI	AGCT	3 cut(s)	62, 140, 350
Alw26I	GTCTC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BbrPI	CACGTG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	189
BceAI	ACGGC	2 cut(s)	45, 296
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	177, 312
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	177, 312
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	3, 56
BspACI	CCGC	3 cut(s)	75, 249, 293
BssECI	CCNNGG	2 cut(s)	177, 312
BssMI	GATC	2 cut(s)	3, 56
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	100, 188
Bst6I	CTCTTC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	6, 59
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	3, 56
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 308
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	77, 237
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	3 cut(s)	41, 234, 376
CviJI	RGCY	6 cut(s)	32, 62, 107, 140, 344, 350
CviKI_1	RGCY	6 cut(s)	32, 62, 107, 140, 344, 350
DpnI	GATC	2 cut(s)	5, 58
DpnII	GATC	2 cut(s)	3, 56
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	44, 237, 379
FaiI	YATR	6 cut(s)	42, 165, 235, 323, 360, 377
FatI	CATG	3 cut(s)	40, 233, 375
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	44, 237, 379
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	113, 242
Hpy166II	GTNNAC	2 cut(s)	262, 316
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	262, 316
HpyCH4III	ACNGT	2 cut(s)	100, 188
HpyCH4IV	ACGT	2 cut(s)	253, 282
HpyCH4V	TGCA	4 cut(s)	92, 191, 233, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 308
HpySE526I	ACGT	2 cut(s)	253, 282
Hsp92II	CATG	3 cut(s)	44, 237, 379
Kzo9I	GATC	2 cut(s)	3, 56
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	51, 126, 275, 302, 313, 336, 358
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	2 cut(s)	253, 282
MaeIII	GTNAC	2 cut(s)	152, 367
MalI	GATC	2 cut(s)	5, 58
MboI	GATC	2 cut(s)	3, 56
MboII	GAAGA	2 cut(s)	145, 194
MluCI	AATT	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	299, 308
NdeII	GATC	2 cut(s)	3, 56
NlaIII	CATG	3 cut(s)	44, 237, 379
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	113, 242
PkrI	GCNGC	1 cut(s)	250
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	3, 56
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	6 cut(s)	64, 142, 223, 256, 285, 352
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	237
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	3 cut(s)	75, 249, 293
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	100, 188
TaiI	ACGT	2 cut(s)	256, 285
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	113, 242
TscAI	CASTG	2 cut(s)	77, 244
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	77, 244
VpaK11BI	GGWCC	1 cut(s)	12
XceI	RCATGY	1 cut(s)	237
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.