DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G59990 AT1G59990 |
| fragaria_vesca | FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 |
| malus_domestica | MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1 |
| prunus_persica | Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1 |
| pyrus_communis | pycom16g07460 |
| rosa_chinensis | RchiOBHm_Chr4g0444581 |
| rosa_laevigata | RLG00000005820 |
| rosa_multiflora | Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00385030 |
| rosa_rugosa | Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100 |
| rosa_samantha | Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400 |
| rosa_wichuraiana | Rw4G035570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 999, 1190 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1046 |
| AccI | GTMKAC | 1 cut(s) | 1544 |
| AccII | CGCG | 1 cut(s) | 182 |
| AccIII | TCCGGA | 1 cut(s) | 123 |
| AciI | CCGC | 7 cut(s) | 154, 177, 180, 475, 607, 728, 787 |
| AclWI | GGATC | 1 cut(s) | 1682 |
| AcoI | YGGCCR | 1 cut(s) | 289 |
| AcsI | RAATTY | 1 cut(s) | 673 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AcvI | CACGTG | 1 cut(s) | 1418 |
| AfaI | GTAC | 2 cut(s) | 685, 970 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 186, 591, 685, 760, 1046, 1246, 1564 |
| AflII | CTTAAG | 1 cut(s) | 1649 |
| AflIII | ACRYGT | 1 cut(s) | 1444 |
| AgsI | TTSAA | 4 cut(s) | 636, 1075, 1157, 1313 |
| AjnI | CCWGG | 1 cut(s) | 1452 |
| Alw21I | GWGCWC | 1 cut(s) | 1403 |
| Alw26I | GTCTC | 5 cut(s) | 106, 469, 589, 776, 1604 |
| Alw44I | GTGCAC | 1 cut(s) | 1399 |
| AlwI | GGATC | 1 cut(s) | 1682 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 839, 1229, 1409 |
| Ama87I | CYCGRG | 1 cut(s) | 1088 |
| Aor13HI | TCCGGA | 1 cut(s) | 123 |
| AoxI | GGCC | 3 cut(s) | 283, 289, 1092 |
| ApaLI | GTGCAC | 1 cut(s) | 1399 |
| ApeKI | GCWGC | 8 cut(s) | 311, 356, 644, 1028, 1409, 1412, 1571, 1661 |
| ApoI | RAATTY | 1 cut(s) | 673 |
| AspLEI | GCGC | 1 cut(s) | 1005 |
| AsuC2I | CCSGG | 1 cut(s) | 1063 |
| AsuII | TTCGAA | 1 cut(s) | 1639 |
| AsuNHI | GCTAGC | 1 cut(s) | 314 |
| AvaI | CYCGRG | 1 cut(s) | 1088 |
| BaeGI | GKGCMC | 1 cut(s) | 1403 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1161, 1194 |
| BauI | CACGAG | 1 cut(s) | 1686 |
| BbrPI | CACGTG | 1 cut(s) | 1418 |
| BbsI | GAAGAC | 2 cut(s) | 879, 1353 |
| Bbv12I | GWGCWC | 1 cut(s) | 1403 |
| BbvI | GCAGC | 8 cut(s) | 298, 368, 631, 1040, 1396, 1399, 1558, 1673 |
| BccI | CCATC | 5 cut(s) | 18, 304, 331, 526, 597 |
| BceAI | ACGGC | 1 cut(s) | 141 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 509, 543 |
| BciT130I | CCWGG | 1 cut(s) | 1454 |
| BciVI | GTATCC | 2 cut(s) | 259, 592 |
| BclI | TGATCA | 1 cut(s) | 454 |
| BcnI | CCSGG | 1 cut(s) | 1063 |
| BcoDI | GTCTC | 5 cut(s) | 106, 469, 589, 776, 1604 |
| BfaI | CTAG | 4 cut(s) | 315, 947, 1536, 1709 |
| BfmI | CTRYAG | 2 cut(s) | 881, 1572 |
| BfrI | CTTAAG | 1 cut(s) | 1649 |
| BfuI | GTATCC | 2 cut(s) | 259, 592 |
| BglII | AGATCT | 1 cut(s) | 1561 |
| BisI | GCNGC | 9 cut(s) | 180, 312, 357, 645, 1029, 1410, 1413, 1572, 1662 |
| BlpI | GCTNAGC | 2 cut(s) | 16, 143 |
| BlsI | GCNGC | 9 cut(s) | 181, 313, 358, 646, 1030, 1411, 1414, 1573, 1663 |
| Bme1390I | CCNGG | 2 cut(s) | 1063, 1454 |
| BmeT110I | CYCGRG | 1 cut(s) | 1088 |
| BmiI | GGNNCC | 1 cut(s) | 166 |
| BmrFI | CCNGG | 2 cut(s) | 1063, 1454 |
| BmsI | GCATC | 2 cut(s) | 904, 1396 |
| BmtI | GCTAGC | 1 cut(s) | 318 |
| BpiI | GAAGAC | 2 cut(s) | 879, 1353 |
| BpmI | CTGGAG | 1 cut(s) | 997 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 16, 143 |
| Bpu14I | TTCGAA | 1 cut(s) | 1639 |
| BpuEI | CTTGAG | 2 cut(s) | 249, 1158 |
| BpuMI | CCSGG | 1 cut(s) | 1063 |
| BsaAI | YACGTR | 1 cut(s) | 1418 |
| BsaJI | CCNNGG | 5 cut(s) | 241, 286, 1062, 1089, 1341 |
| BsaWI | WCCGGW | 1 cut(s) | 123 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 768, 798, 903, 933 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 186, 591, 685, 760, 1046, 1246, 1564 |
| Bse118I | RCCGGY | 1 cut(s) | 281 |
| Bse1I | ACTGG | 3 cut(s) | 370, 980, 1040 |
| Bse3DI | GCAATG | 1 cut(s) | 424 |
| BseAI | TCCGGA | 1 cut(s) | 123 |
| BseBI | CCWGG | 1 cut(s) | 1454 |
| BseDI | CCNNGG | 5 cut(s) | 241, 286, 1062, 1089, 1341 |
| BseGI | GGATG | 5 cut(s) | 349, 537, 608, 892, 1186 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 186, 591, 685, 760, 1046, 1246, 1564 |
| BseMI | GCAATG | 1 cut(s) | 424 |
| BseMII | CTCAG | 3 cut(s) | 30, 134, 507 |
| BseNI | ACTGG | 3 cut(s) | 370, 980, 1040 |
| BseRI | GAGGAG | 3 cut(s) | 213, 956, 994 |
| BseSI | GKGCMC | 1 cut(s) | 1403 |
| BseXI | GCAGC | 8 cut(s) | 298, 368, 631, 1040, 1396, 1399, 1558, 1673 |
| BsgI | GTGCAG | 1 cut(s) | 1398 |
| Bsh1236I | CGCG | 1 cut(s) | 182 |
| BshFI | GGCC | 3 cut(s) | 285, 291, 1094 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1403 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1088 |
| BsiSI | CCGG | 3 cut(s) | 124, 282, 1062 |
| BsiWI | CGTACG | 1 cut(s) | 683 |
| BslFI | GGGAC | 1 cut(s) | 380 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 186, 591, 685, 760, 1046, 1246, 1564 |
| BsmAI | GTCTC | 5 cut(s) | 106, 469, 589, 776, 1604 |
| BsmBI | CGTCTC | 1 cut(s) | 776 |
| BsmFI | GGGAC | 1 cut(s) | 380 |
| BsmI | GAATGC | 1 cut(s) | 1319 |
| BsnI | GGCC | 3 cut(s) | 285, 291, 1094 |
| BsoBI | CYCGRG | 1 cut(s) | 1088 |
| Bsp119I | TTCGAA | 1 cut(s) | 1639 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1403 |
| Bsp13I | TCCGGA | 1 cut(s) | 123 |
| Bsp143I | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 16, 143 |
| BspACI | CCGC | 7 cut(s) | 154, 177, 180, 475, 607, 728, 787 |
| BspANI | GGCC | 3 cut(s) | 285, 291, 1094 |
| BspCNI | CTCAG | 3 cut(s) | 29, 135, 508 |
| BspEI | TCCGGA | 1 cut(s) | 123 |
| BspFNI | CGCG | 1 cut(s) | 182 |
| BspLI | GGNNCC | 1 cut(s) | 166 |
| BspMAI | CTGCAG | 2 cut(s) | 885, 1576 |
| BspOI | GCTAGC | 1 cut(s) | 318 |
| BspPI | GGATC | 1 cut(s) | 1682 |
| BspQI | GCTCTTC | 2 cut(s) | 654, 1692 |
| BspT104I | TTCGAA | 1 cut(s) | 1639 |
| BspTI | CTTAAG | 1 cut(s) | 1649 |
| BsrDI | GCAATG | 1 cut(s) | 424 |
| BsrFI | RCCGGY | 1 cut(s) | 281 |
| BsrI | ACTGG | 3 cut(s) | 370, 980, 1040 |
| BssAI | RCCGGY | 1 cut(s) | 281 |
| BssECI | CCNNGG | 5 cut(s) | 241, 286, 1062, 1089, 1341 |
| BssMI | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| BssNAI | GTATAC | 1 cut(s) | 1545 |
| BssSI | CACGAG | 1 cut(s) | 1686 |
| BssT1I | CCWWGG | 2 cut(s) | 241, 1341 |
| Bst1107I | GTATAC | 1 cut(s) | 1545 |
| Bst2BI | CACGAG | 1 cut(s) | 1686 |
| Bst2UI | CCWGG | 1 cut(s) | 1454 |
| Bst4CI | ACNGT | 5 cut(s) | 169, 513, 542, 813, 1264 |
| Bst6I | CTCTTC | 5 cut(s) | 74, 654, 900, 1041, 1692 |
| BstAFI | CTTAAG | 1 cut(s) | 1649 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1314, 1463 |
| BstBAI | YACGTR | 1 cut(s) | 1418 |
| BstBI | TTCGAA | 1 cut(s) | 1639 |
| BstC8I | GCNNGC | 3 cut(s) | 134, 283, 316 |
| BstDEI | CTNAG | 6 cut(s) | 16, 143, 516, 572, 934, 1595 |
| BstF5I | GGATG | 5 cut(s) | 349, 537, 608, 892, 1186 |
| BstFNI | CGCG | 1 cut(s) | 182 |
| BstHHI | GCGC | 1 cut(s) | 1005 |
| BstKTI | GATC | 4 cut(s) | 457, 1223, 1564, 1677 |
| BstMAI | GTCTC | 5 cut(s) | 106, 469, 589, 776, 1604 |
| BstMBI | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 153, 443, 1314, 1463, 1472 |
| BstNI | CCWGG | 1 cut(s) | 1454 |
| BstNSI | RCATGY | 4 cut(s) | 784, 962, 1448, 1543 |
| BstSCI | CCNGG | 2 cut(s) | 1061, 1452 |
| BstSFI | CTRYAG | 2 cut(s) | 881, 1572 |
| BstSLI | GKGCMC | 1 cut(s) | 1403 |
| BstUI | CGCG | 1 cut(s) | 182 |
| BstV1I | GCAGC | 8 cut(s) | 298, 368, 631, 1040, 1396, 1399, 1558, 1673 |
| BstV2I | GAAGAC | 2 cut(s) | 879, 1353 |
| BstX2I | RGATCY | 1 cut(s) | 1561 |
| BstYI | RGATCY | 1 cut(s) | 1561 |
| BstZ17I | GTATAC | 1 cut(s) | 1545 |
| BsuI | GTATCC | 2 cut(s) | 259, 592 |
| BsuRI | GGCC | 3 cut(s) | 285, 291, 1094 |
| BtsCI | GGATG | 5 cut(s) | 349, 537, 608, 892, 1186 |
| BtsI | GCAGTG | 1 cut(s) | 1074 |
| BtsIMutI | CAGTG | 5 cut(s) | 213, 509, 1074, 1241, 1287 |
| Cac8I | GCNNGC | 3 cut(s) | 134, 283, 316 |
| CaiI | CAGNNNCTG | 3 cut(s) | 839, 1229, 1409 |
| CfoI | GCGC | 1 cut(s) | 1005 |
| Cfr10I | RCCGGY | 1 cut(s) | 281 |
| Csp6I | GTAC | 2 cut(s) | 684, 969 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1245, 1280 |
| CviAII | CATG | 6 cut(s) | 231, 781, 959, 1205, 1445, 1540 |
| CviQI | GTAC | 2 cut(s) | 684, 969 |
| DdeI | CTNAG | 6 cut(s) | 16, 143, 516, 572, 934, 1595 |
| DpnI | GATC | 4 cut(s) | 456, 1222, 1563, 1676 |
| DpnII | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| EaeI | YGGCCR | 1 cut(s) | 289 |
| Eam1104I | CTCTTC | 5 cut(s) | 74, 654, 900, 1041, 1692 |
| EarI | CTCTTC | 5 cut(s) | 74, 654, 900, 1041, 1692 |
| Eco130I | CCWWGG | 2 cut(s) | 241, 1341 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| Eco72I | CACGTG | 1 cut(s) | 1418 |
| Eco88I | CYCGRG | 1 cut(s) | 1088 |
| EcoRII | CCWGG | 1 cut(s) | 1452 |
| EcoT14I | CCWWGG | 2 cut(s) | 241, 1341 |
| ErhI | CCWWGG | 2 cut(s) | 241, 1341 |
| Esp3I | CGTCTC | 1 cut(s) | 776 |
| FaeI | CATG | 6 cut(s) | 234, 784, 962, 1208, 1448, 1543 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1648, 1680 |
| FaqI | GGGAC | 1 cut(s) | 380 |
| FatI | CATG | 6 cut(s) | 230, 780, 958, 1204, 1444, 1539 |
| FauI | CCCGC | 3 cut(s) | 161, 482, 600 |
| FbaI | TGATCA | 1 cut(s) | 454 |
| FblI | GTMKAC | 1 cut(s) | 1544 |
| Fnu4HI | GCNGC | 9 cut(s) | 180, 312, 357, 645, 1029, 1410, 1413, 1572, 1662 |
| FokI | GGATG | 5 cut(s) | 356, 544, 615, 899, 1193 |
| Fsp4HI | GCNGC | 9 cut(s) | 180, 312, 357, 645, 1029, 1410, 1413, 1572, 1662 |
| FspBI | CTAG | 4 cut(s) | 315, 947, 1536, 1709 |
| GlaI | GCGC | 1 cut(s) | 1004 |
| GluI | GCNGC | 9 cut(s) | 180, 312, 357, 645, 1029, 1410, 1413, 1572, 1662 |
| GsuI | CTGGAG | 1 cut(s) | 997 |
| HaeIII | GGCC | 3 cut(s) | 285, 291, 1094 |
| HapII | CCGG | 3 cut(s) | 124, 282, 1062 |
| HhaI | GCGC | 1 cut(s) | 1005 |
| Hin1II | CATG | 6 cut(s) | 234, 784, 962, 1208, 1448, 1543 |
| Hin6I | GCGC | 1 cut(s) | 1003 |
| HinP1I | GCGC | 1 cut(s) | 1003 |
| HindIII | AAGCTT | 2 cut(s) | 1633, 1646 |
| HinfI | GANTC | 8 cut(s) | 304, 431, 462, 836, 1214, 1277, 1550, 1682 |
| HpaII | CCGG | 3 cut(s) | 124, 282, 1062 |
| Hpy166II | GTNNAC | 3 cut(s) | 1010, 1401, 1545 |
| Hpy188III | TCNNGA | 5 cut(s) | 124, 336, 1088, 1218, 1686 |
| Hpy8I | GTNNAC | 3 cut(s) | 1010, 1401, 1545 |
| Hpy99I | CGWCG | 2 cut(s) | 684, 1584 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4III | ACNGT | 5 cut(s) | 169, 513, 542, 813, 1264 |
| HpyCH4IV | ACGT | 3 cut(s) | 206, 1417, 1437 |
| HpyCH4V | TGCA | 9 cut(s) | 356, 417, 883, 1028, 1256, 1401, 1415, 1574, 1669 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 153, 443, 1314, 1463, 1472 |
| HpyF3I | CTNAG | 6 cut(s) | 16, 143, 516, 572, 934, 1595 |
| HpySE526I | ACGT | 3 cut(s) | 206, 1417, 1437 |
| Hsp92II | CATG | 6 cut(s) | 234, 784, 962, 1208, 1448, 1543 |
| HspAI | GCGC | 1 cut(s) | 1003 |
| Kpn2I | TCCGGA | 1 cut(s) | 123 |
| KroI | GCCGGC | 1 cut(s) | 281 |
| KroNI | GCCGGC | 1 cut(s) | 283 |
| Ksp22I | TGATCA | 1 cut(s) | 454 |
| Kzo9I | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| LguI | GCTCTTC | 2 cut(s) | 654, 1692 |
| LmnI | GCTCC | 3 cut(s) | 789, 943, 1343 |
| Lsp1109I | GCAGC | 8 cut(s) | 298, 368, 631, 1040, 1396, 1399, 1558, 1673 |
| LweI | GCATC | 2 cut(s) | 904, 1396 |
| MaeI | CTAG | 4 cut(s) | 315, 947, 1536, 1709 |
| MaeII | ACGT | 3 cut(s) | 206, 1417, 1437 |
| MaeIII | GTNAC | 7 cut(s) | 169, 505, 548, 807, 1124, 1159, 1531 |
| MalI | GATC | 4 cut(s) | 456, 1222, 1563, 1676 |
| MboI | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| MfeI | CAATTG | 1 cut(s) | 1096 |
| MflI | RGATCY | 1 cut(s) | 1561 |
| MhlI | GDGCHC | 1 cut(s) | 1403 |
| MluCI | AATT | 5 cut(s) | 77, 106, 402, 673, 1096 |
| MlyI | GAGTC | 2 cut(s) | 471, 1223 |
| MmeI | TCCRAC | 1 cut(s) | 1578 |
| MroI | TCCGGA | 1 cut(s) | 123 |
| MroNI | GCCGGC | 1 cut(s) | 281 |
| MseI | TTAA | 3 cut(s) | 612, 1139, 1650 |
| MslI | CAYNNNNRTG | 1 cut(s) | 779 |
| MspA1I | CMGCKG | 2 cut(s) | 359, 644 |
| MspCI | CTTAAG | 1 cut(s) | 1649 |
| MspI | CCGG | 3 cut(s) | 124, 282, 1062 |
| MspR9I | CCNGG | 2 cut(s) | 1063, 1454 |
| MunI | CAATTG | 1 cut(s) | 1096 |
| Mva1269I | GAATGC | 1 cut(s) | 1319 |
| MvaI | CCWGG | 1 cut(s) | 1454 |
| MvnI | CGCG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 153, 443, 1314, 1463, 1472 |
| NaeI | GCCGGC | 1 cut(s) | 283 |
| NciI | CCSGG | 1 cut(s) | 1063 |
| NdeII | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| NgoMIV | GCCGGC | 1 cut(s) | 281 |
| NheI | GCTAGC | 1 cut(s) | 314 |
| NlaIII | CATG | 6 cut(s) | 234, 784, 962, 1208, 1448, 1543 |
| NlaIV | GGNNCC | 1 cut(s) | 166 |
| NmeAIII | GCCGAG | 1 cut(s) | 267 |
| NmuCI | GTSAC | 4 cut(s) | 169, 548, 807, 1124 |
| NspI | RCATGY | 4 cut(s) | 784, 962, 1448, 1543 |
| NspV | TTCGAA | 1 cut(s) | 1639 |
| PciI | ACATGT | 1 cut(s) | 1444 |
| PciSI | GCTCTTC | 2 cut(s) | 654, 1692 |
| PctI | GAATGC | 1 cut(s) | 1319 |
| PdiI | GCCGGC | 1 cut(s) | 283 |
| PfeI | GAWTC | 6 cut(s) | 304, 431, 836, 1277, 1550, 1682 |
| Pfl23II | CGTACG | 1 cut(s) | 683 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1046 |
| PkrI | GCNGC | 9 cut(s) | 181, 313, 358, 646, 1030, 1411, 1414, 1573, 1663 |
| PleI | GAGTC | 2 cut(s) | 470, 1222 |
| PmaCI | CACGTG | 1 cut(s) | 1418 |
| PmlI | CACGTG | 1 cut(s) | 1418 |
| PpsI | GAGTC | 2 cut(s) | 470, 1222 |
| Ppu21I | YACGTR | 1 cut(s) | 1418 |
| PscI | ACATGT | 1 cut(s) | 1444 |
| PsiI | TTATAA | 2 cut(s) | 999, 1190 |
| Psp6I | CCWGG | 1 cut(s) | 1452 |
| PspCI | CACGTG | 1 cut(s) | 1418 |
| PspGI | CCWGG | 1 cut(s) | 1452 |
| PspLI | CGTACG | 1 cut(s) | 683 |
| PspN4I | GGNNCC | 1 cut(s) | 166 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 157, 189, 813, 845 |
| PstI | CTGCAG | 2 cut(s) | 885, 1576 |
| PstNI | CAGNNNCTG | 3 cut(s) | 839, 1229, 1409 |
| PsuI | RGATCY | 1 cut(s) | 1561 |
| PvuII | CAGCTG | 2 cut(s) | 359, 644 |
| RsaI | GTAC | 2 cut(s) | 685, 970 |
| RsaNI | GTAC | 2 cut(s) | 684, 969 |
| RseI | CAYNNNNRTG | 1 cut(s) | 779 |
| SapI | GCTCTTC | 2 cut(s) | 654, 1692 |
| SaqAI | TTAA | 3 cut(s) | 612, 1139, 1650 |
| SatI | GCNGC | 9 cut(s) | 180, 312, 357, 645, 1029, 1410, 1413, 1572, 1662 |
| Sau3AI | GATC | 4 cut(s) | 454, 1220, 1561, 1674 |
| SchI | GAGTC | 2 cut(s) | 471, 1223 |
| ScrFI | CCNGG | 2 cut(s) | 1063, 1454 |
| SduI | GDGCHC | 1 cut(s) | 1403 |
| SfaNI | GCATC | 2 cut(s) | 904, 1396 |
| SfcI | CTRYAG | 2 cut(s) | 881, 1572 |
| SfuI | TTCGAA | 1 cut(s) | 1639 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 779 |
| SmlI | CTYRAG | 3 cut(s) | 264, 1173, 1649 |
| SmoI | CTYRAG | 3 cut(s) | 264, 1173, 1649 |
| Sse9I | AATT | 5 cut(s) | 77, 106, 402, 673, 1096 |
| SsiI | CCGC | 7 cut(s) | 154, 177, 180, 475, 607, 728, 787 |
| SspI | AATATT | 2 cut(s) | 442, 661 |
| SspMI | CTAG | 4 cut(s) | 315, 947, 1536, 1709 |
| StyD4I | CCNGG | 2 cut(s) | 1061, 1452 |
| StyI | CCWWGG | 2 cut(s) | 241, 1341 |
| TaaI | ACNGT | 5 cut(s) | 169, 513, 542, 813, 1264 |
| TaiI | ACGT | 3 cut(s) | 209, 1420, 1440 |
| TaqI | TCGA | 4 cut(s) | 1217, 1501, 1582, 1639 |
| TaqII | GACCGA | 1 cut(s) | 1365 |
| TasI | AATT | 5 cut(s) | 77, 106, 402, 673, 1096 |
| TatI | WGTACW | 1 cut(s) | 968 |
| TauI | GCSGC | 1 cut(s) | 182 |
| TfiI | GAWTC | 6 cut(s) | 304, 431, 836, 1277, 1550, 1682 |
| Tru1I | TTAA | 3 cut(s) | 612, 1139, 1650 |
| Tru9I | TTAA | 3 cut(s) | 612, 1139, 1650 |
| TscAI | CASTG | 5 cut(s) | 220, 516, 1074, 1241, 1287 |
| TseFI | GTSAC | 4 cut(s) | 169, 548, 807, 1124 |
| TseI | GCWGC | 8 cut(s) | 311, 356, 644, 1028, 1409, 1412, 1571, 1661 |
| Tsp45I | GTSAC | 4 cut(s) | 169, 548, 807, 1124 |
| TspGWI | ACGGA | 5 cut(s) | 668, 701, 712, 758, 1539 |
| TspRI | CASTG | 5 cut(s) | 220, 516, 1074, 1241, 1287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1046 |
| Vha464I | CTTAAG | 1 cut(s) | 1649 |
| VneI | GTGCAC | 1 cut(s) | 1399 |
| XapI | RAATTY | 1 cut(s) | 673 |
| XceI | RCATGY | 4 cut(s) | 784, 962, 1448, 1543 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1382, 1474, 1561 |
| XmiI | GTMKAC | 1 cut(s) | 1544 |
| XspI | CTAG | 4 cut(s) | 315, 947, 1536, 1709 |