Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6018748 .. 6020795

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1086400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAGGGATGGCCAGTTGGTGAACCTGATATTATTGTTTCGACACCAGCCGCTCTTCTGAATAATATTGACCCAAAAAATTTCCGTCGTATGGATTTTATAAGGAGTGTAAAATATGTGGTATTTGATGAAGCGGATATGCTCCTCTCTGGGGGTTACCAGAATAAGGTTATCCGTCTCATACACATGCTCCGGTTTGATGAAAAGCTATTGTCACGGATAAGTGAAGAGAATCTATCAGAACCCAATTCATCGCACTTTGAAGATGAAGACGACCTTCAGACTGAAGACATATTTGAAGAAGAGGGAGATTCTGAGGGAGATTCCGAGGAAGATGGTAGCGTACATGAGGAGGTTGAGGCTGGGCGTGTAAAAAGTTCAGACTGGAGGAGAGTGAGAAAAGTTTATAAGAGCAGTAAACAGTACATTTTTGTTGCCGCTACTCTTCCAGCAAATGGAAAGAGAACTGCCGGGGCAGTGTTGAAGAAGATGTTTCCAGAGGCCGATTGGGTTAGTGGAAACTACCTCCATTGCCACAACCCCAGTTACTTGATTGAGACGAGATCAGCTTCTGGTCAGTGCCGAACAATGGTGTTTGCAAATACTGTTGAGGCTGTGGAATCGGTAGCAAAGATATTGAAGAGAGCTGGAATTGAATGTTACCAATACCATAAAGATTGCTCCTTGGAAGACCGTGCAAAGACATTGGTTGATTTTCAAGAGAAAGGTGGTATTTTCGTATGCACTGATTCTGCCGCACGTGGCGTTGACATTCCAAATGTATCACACGTTATCCAGGCGGATTTTGCTACTTCTGCCGTGGACTTTATACACAGGGTTGGTCGCACAGCCAGAGCTGGTCAGTATGGACTTGTGACTAGCATGTATACAGAATCTAACCGTGACCTGGTTGCTGCAGTTCGTCGGGCAGGGGAACTTGATCTGCCTGTGGAGACAGCATTTAGCAGGAAAAGAAGCTTCCGAAATAAGCTCAAGAAAAAAGCTGCTTTGCGAAGAATCAAGGATTCATCAGCTAATGAGGAGAGCGTTCTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

353

Amino Acids

39.56

Weight (kDa)

5.86

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	8 - 65	1.9e-07	DEAD/DEAH box helicase
Helicase_C	PF00271	190 - 287	2e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	101, 408
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	887
AciI	CCGC	5 cut(s)	51, 134, 438, 756, 800
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	263, 306
AcvI	CACGTG	1 cut(s)	761
AfaI	GTAC	2 cut(s)	345, 425
AfiI	CCNNNNNNNGG	6 cut(s)	91, 151, 166, 455, 589, 907
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	6 cut(s)	263, 299, 484, 640, 656, 719
AjnI	CCWGG	2 cut(s)	795, 906
AluBI	AGCT	8 cut(s)	208, 569, 647, 857, 978, 991, 1004, 1034
AluI	AGCT	8 cut(s)	208, 569, 647, 857, 978, 991, 1004, 1034
Alw26I	GTCTC	3 cut(s)	182, 551, 947
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	2 cut(s)	11, 501
ApeKI	GCWGC	2 cut(s)	914, 1004
ApoI	RAATTY	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	13
BbrPI	CACGTG	1 cut(s)	761
BbsI	GAAGAC	3 cut(s)	276, 294, 696
BbvI	GCAGC	2 cut(s)	901, 991
BccI	CCATC	2 cut(s)	3, 329
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	2 cut(s)	797, 908
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	182, 551, 947
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	915
BisI	GCNGC	5 cut(s)	51, 438, 756, 915, 1005
BlsI	GCNGC	5 cut(s)	52, 439, 757, 916, 1006
Bme1390I	CCNGG	3 cut(s)	472, 797, 908
BmrFI	CCNGG	3 cut(s)	472, 797, 908
BmrI	ACTGGG	1 cut(s)	537
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	3 cut(s)	276, 294, 696
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	327, 471, 684, 819
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 151, 166, 455, 589, 907
Bse1I	ACTGG	3 cut(s)	14, 389, 543
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	797, 908
BseDI	CCNNGG	4 cut(s)	327, 471, 684, 819
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	6 cut(s)	91, 151, 166, 455, 589, 907
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	14, 389, 543
BseRI	GAGGAG	4 cut(s)	134, 365, 403, 1055
BseXI	GCAGC	2 cut(s)	901, 991
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	2 cut(s)	13, 503
BsiSI	CCGG	2 cut(s)	193, 471
BslI	CCNNNNNNNGG	6 cut(s)	91, 151, 166, 455, 589, 907
BsmAI	GTCTC	3 cut(s)	182, 551, 947
BsmBI	CGTCTC	2 cut(s)	182, 551
BsnI	GGCC	2 cut(s)	13, 503
Bsp143I	GATC	2 cut(s)	563, 940
BspACI	CCGC	5 cut(s)	51, 134, 438, 756, 800
BspANI	GGCC	2 cut(s)	13, 503
BspCNI	CTCAG	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	919
BspQI	GCTCTTC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	14, 389, 543
BssECI	CCNNGG	4 cut(s)	327, 471, 684, 819
BssMI	GATC	2 cut(s)	563, 940
BssNAI	GTATAC	1 cut(s)	888
BssT1I	CCWWGG	1 cut(s)	684
Bst1107I	GTATAC	1 cut(s)	888
Bst2UI	CCWGG	2 cut(s)	797, 908
Bst4CI	ACNGT	4 cut(s)	423, 607, 695, 902
Bst6I	CTCTTC	5 cut(s)	60, 222, 297, 450, 635
BstBAI	YACGTR	1 cut(s)	761
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	819
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	566, 943
BstMAI	GTCTC	3 cut(s)	182, 551, 947
BstMBI	GATC	2 cut(s)	563, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 806, 815
BstNI	CCWGG	2 cut(s)	797, 908
BstNSI	RCATGY	2 cut(s)	190, 886
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	470, 795, 906
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	901, 991
BstV2I	GAAGAC	3 cut(s)	276, 294, 696
BstZ17I	GTATAC	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	13, 503
BtgI	CCRYGG	1 cut(s)	819
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	483, 584, 744
CaiI	CAGNNNCTG	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	906
Csp6I	GTAC	2 cut(s)	344, 424
CviAII	CATG	3 cut(s)	187, 347, 883
CviQI	GTAC	2 cut(s)	344, 424
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	565, 942
DpnII	GATC	2 cut(s)	563, 940
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	5 cut(s)	60, 222, 297, 450, 635
EarI	CTCTTC	5 cut(s)	60, 222, 297, 450, 635
EciI	GGCGGA	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	684
Eco57I	CTGAAG	2 cut(s)	263, 306
Eco72I	CACGTG	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	795, 906
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	2 cut(s)	182, 551
FaeI	CATG	3 cut(s)	190, 350, 886
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	3 cut(s)	186, 346, 882
FblI	GTMKAC	1 cut(s)	887
Fnu4HI	GCNGC	5 cut(s)	51, 438, 756, 915, 1005
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	5 cut(s)	51, 438, 756, 915, 1005
FspBI	CTAG	1 cut(s)	879
GluI	GCNGC	5 cut(s)	51, 438, 756, 915, 1005
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	13, 503
HapII	CCGG	2 cut(s)	193, 471
Hin1II	CATG	3 cut(s)	190, 350, 886
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	976
HinfI	GANTC	8 cut(s)	232, 311, 323, 620, 749, 893, 1017, 1025
HpaII	CCGG	2 cut(s)	193, 471
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	5 cut(s)	23, 419, 769, 823, 888
Hpy188I	TCNGA	7 cut(s)	60, 241, 282, 316, 328, 382, 983
Hpy188III	TCNNGA	3 cut(s)	497, 719, 994
Hpy8I	GTNNAC	5 cut(s)	23, 419, 769, 823, 888
Hpy99I	CGWCG	2 cut(s)	90, 927
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	4 cut(s)	423, 607, 695, 902
HpyCH4IV	ACGT	2 cut(s)	760, 789
HpyCH4V	TGCA	5 cut(s)	4, 599, 698, 744, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 806, 815
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	2 cut(s)	760, 789
Hsp92II	CATG	3 cut(s)	190, 350, 886
Kzo9I	GATC	2 cut(s)	563, 940
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	3 cut(s)	147, 195, 686
Lsp1109I	GCAGC	2 cut(s)	901, 991
MabI	ACCWGGT	1 cut(s)	906
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	2 cut(s)	760, 789
MaeIII	GTNAC	6 cut(s)	155, 213, 545, 659, 874, 902
MalI	GATC	2 cut(s)	565, 942
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	563, 940
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	3 cut(s)	79, 247, 651
MluNI	TGGCCA	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	1057
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	2 cut(s)	193, 471
MspR9I	CCNGG	3 cut(s)	472, 797, 908
MvaI	CCWGG	2 cut(s)	797, 908
MwoI	GCNNNNNNNGC	3 cut(s)	10, 806, 815
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	2 cut(s)	563, 940
NlaIII	CATG	3 cut(s)	190, 350, 886
NmuCI	GTSAC	3 cut(s)	213, 874, 902
NspI	RCATGY	2 cut(s)	190, 886
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	8 cut(s)	232, 311, 323, 620, 749, 893, 1017, 1025
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	52, 439, 757, 916, 1006
PmaCI	CACGTG	1 cut(s)	761
PmlI	CACGTG	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	761
PsiI	TTATAA	2 cut(s)	101, 408
Psp6I	CCWGG	2 cut(s)	795, 906
PspCI	CACGTG	1 cut(s)	761
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	795, 906
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	572
RsaI	GTAC	2 cut(s)	345, 425
RsaNI	GTAC	2 cut(s)	344, 424
RseI	CAYNNNNRTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	1057
SatI	GCNGC	5 cut(s)	51, 438, 756, 915, 1005
Sau3AI	GATC	2 cut(s)	563, 940
ScrFI	CCNGG	3 cut(s)	472, 797, 908
SexAI	ACCWGGT	1 cut(s)	906
SfcI	CTRYAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	3 cut(s)	79, 247, 651
SsiI	CCGC	5 cut(s)	51, 134, 438, 756, 800
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	3 cut(s)	470, 795, 906
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	4 cut(s)	423, 607, 695, 902
TaiI	ACGT	2 cut(s)	763, 792
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	79, 247, 651
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	3 cut(s)	53, 440, 758
TfiI	GAWTC	8 cut(s)	232, 311, 323, 620, 749, 893, 1017, 1025
Tru1I	TTAA	1 cut(s)	1057
Tru9I	TTAA	1 cut(s)	1057
TscAI	CASTG	3 cut(s)	483, 584, 751
TseFI	GTSAC	3 cut(s)	213, 874, 902
TseI	GCWGC	2 cut(s)	914, 1004
Tsp45I	GTSAC	3 cut(s)	213, 874, 902
TspDTI	ATGAA	5 cut(s)	144, 216, 240, 282, 1017
TspGWI	ACGGA	3 cut(s)	74, 164, 232
TspRI	CASTG	3 cut(s)	483, 584, 751
Van91I	CCANNNNNTGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	190, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	887
XspI	CTAG	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.