Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

6020797 .. 6021693

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1086500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATACTCCGTCGCTCCGCCACAACAATGCTTCCTCTCTACAAACTCTCCGCGTCTCCGCCCAAGCTCCTCTCCCAATACCGGAACTCCTTCTCTCTTCATTCCAATTCTTCGTCTTCGTTTCGGATCAGCTTGCTCTTGCTCAGCCACCCCCGCCGGTTCGGAACCGCCACCACTGCCGCGTACCGGAAGGAGGGAGGAGATACATTTTTCACTGAAGAAAGCATTTCGTGGACGTCCCTCGGCGTGTCCGATAAGGTTTCCCAAGCTCTCTACAACGCCGGCCTCGGCCAACCGTCTCTGGTTCAGGCTGCTAGCATACCGTCTGTACTTTCAGGGAAGGATGTTGTTGTTGCAGCTGAAACTGGTAGTGGTAAAACGCACAGCTTCCTTGTCCCCCTAATTGATAAGCTGTGTAATGAGCACCACGAATTTGCGAATGTTGCTTCTTCTGATCAAGGAATGTCCCAACCCCGTCAGGTTTCTCTTGTTCTTTGTCCAAATGTGACACTTGCCGACCAAGTGGTTCGGATGGCCAACGGTCTTTGTGGTGAAAATGGTGAACCACTTCTGAGTGTTGTATCTCTCTGTGGGAGACAGGTATTGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

205

Amino Acids

21.9

Weight (kDa)

8.75

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	102 - 185	2.6e-13	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccII	CGCG	2 cut(s)	53, 182
AciI	CCGC	6 cut(s)	18, 51, 59, 154, 168, 180
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	289, 534
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	185, 330
AfiI	CCNNNNNNNGG	3 cut(s)	81, 186, 193
AluBI	AGCT	6 cut(s)	67, 132, 269, 359, 387, 412
AluI	AGCT	6 cut(s)	67, 132, 269, 359, 387, 412
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	3 cut(s)	60, 303, 589
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	283, 289, 534
ApeKI	GCWGC	2 cut(s)	311, 356
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	2 cut(s)	89, 567
AsuHPI	GGTGA	2 cut(s)	563, 572
AsuNHI	GCTAGC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	298, 368
BccI	CCATC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	60, 303, 589
BfaI	CTAG	2 cut(s)	315, 613
BisI	GCNGC	3 cut(s)	180, 312, 357
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	3 cut(s)	181, 313, 358
BmiI	GGNNCC	1 cut(s)	166
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	241, 286
BsaWI	WCCGGW	2 cut(s)	81, 186
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 186, 193
Bse118I	RCCGGY	2 cut(s)	156, 281
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	241, 286
BseGI	GGATG	2 cut(s)	349, 537
BseLI	CCNNNNNNNGG	3 cut(s)	81, 186, 193
BseMII	CTCAG	2 cut(s)	157, 563
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	59, 213
BseXI	GCAGC	2 cut(s)	298, 368
Bsh1236I	CGCG	2 cut(s)	53, 182
BshFI	GGCC	3 cut(s)	285, 291, 536
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	4 cut(s)	82, 157, 187, 282
BslFI	GGGAC	3 cut(s)	223, 380, 451
BslI	CCNNNNNNNGG	3 cut(s)	81, 186, 193
BsmAI	GTCTC	3 cut(s)	60, 303, 589
BsmBI	CGTCTC	2 cut(s)	60, 303
BsmFI	GGGAC	3 cut(s)	223, 380, 451
BsnI	GGCC	3 cut(s)	285, 291, 536
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	126, 454
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	6 cut(s)	18, 51, 59, 154, 168, 180
BspANI	GGCC	3 cut(s)	285, 291, 536
BspCNI	CTCAG	2 cut(s)	156, 564
BspFNI	CGCG	2 cut(s)	53, 182
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	156, 281
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	2 cut(s)	156, 281
BssECI	CCNNGG	2 cut(s)	241, 286
BssMI	GATC	2 cut(s)	126, 454
BssNI	GRCGYC	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	297, 324, 542
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	134, 283, 316
BstDEI	CTNAG	2 cut(s)	143, 572
BstF5I	GGATG	2 cut(s)	349, 537
BstFNI	CGCG	2 cut(s)	53, 182
BstKTI	GATC	2 cut(s)	129, 457
BstMAI	GTCTC	3 cut(s)	60, 303, 589
BstMBI	GATC	2 cut(s)	126, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 176, 443
BstUI	CGCG	2 cut(s)	53, 182
BstV1I	GCAGC	2 cut(s)	298, 368
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	285, 291, 536
BtsCI	GGATG	2 cut(s)	349, 537
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 213
Cac8I	GCNNGC	3 cut(s)	134, 283, 316
Cfr10I	RCCGGY	2 cut(s)	156, 281
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	184, 329
CviQI	GTAC	2 cut(s)	184, 329
DdeI	CTNAG	2 cut(s)	143, 572
DpnI	GATC	2 cut(s)	128, 456
DpnII	GATC	2 cut(s)	126, 454
EaeI	YGGCCR	2 cut(s)	289, 534
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	2 cut(s)	7, 48
Eco57I	CTGAAG	1 cut(s)	237
Esp3I	CGTCTC	2 cut(s)	60, 303
FaiI	YATR	1 cut(s)	320
FaqI	GGGAC	3 cut(s)	223, 380, 451
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	180, 312, 357
FokI	GGATG	2 cut(s)	356, 544
Fsp4HI	GCNGC	3 cut(s)	180, 312, 357
FspBI	CTAG	2 cut(s)	315, 613
GluI	GCNGC	3 cut(s)	180, 312, 357
HaeIII	GGCC	3 cut(s)	285, 291, 536
HapII	CCGG	4 cut(s)	82, 157, 187, 282
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	82, 157, 187, 282
HphI	GGTGA	2 cut(s)	563, 572
Hpy166II	GTNNAC	2 cut(s)	234, 563
Hpy188I	TCNGA	6 cut(s)	126, 164, 253, 454, 531, 573
Hpy8I	GTNNAC	2 cut(s)	234, 563
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	100, 184, 334
HpyCH4III	ACNGT	3 cut(s)	297, 324, 542
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 176, 443
HpyF3I	CTNAG	2 cut(s)	143, 572
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	126, 454
LmnI	GCTCC	2 cut(s)	20, 72
Lsp1109I	GCAGC	2 cut(s)	298, 368
MaeI	CTAG	2 cut(s)	315, 613
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	128, 456
MboI	GATC	2 cut(s)	126, 454
MboII	GAAGA	5 cut(s)	89, 102, 108, 230, 441
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	3 cut(s)	106, 402, 431
MluNI	TGGCCA	1 cut(s)	536
MnlI	CCTC	6 cut(s)	45, 80, 187, 191, 251, 296
Mox20I	TGGCCA	1 cut(s)	536
MroNI	GCCGGC	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	89, 567
MscI	TGGCCA	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	4 cut(s)	82, 157, 187, 282
MvnI	CGCG	2 cut(s)	53, 182
MwoI	GCNNNNNNNGC	3 cut(s)	153, 176, 443
NaeI	GCCGGC	1 cut(s)	283
NdeII	GATC	2 cut(s)	126, 454
NgoMIV	GCCGGC	1 cut(s)	281
NheI	GCTAGC	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	2 cut(s)	222, 267
NmuCI	GTSAC	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	283
PdmI	GAANNNNTTC	2 cut(s)	89, 567
PkrI	GCNGC	3 cut(s)	181, 313, 358
PspN4I	GGNNCC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	185, 330
RsaNI	GTAC	2 cut(s)	184, 329
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	3 cut(s)	180, 312, 357
Sau3AI	GATC	2 cut(s)	126, 454
SduI	GDGCHC	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	106, 402, 431
SsiI	CCGC	6 cut(s)	18, 51, 59, 154, 168, 180
SspMI	CTAG	2 cut(s)	315, 613
TaaI	ACNGT	3 cut(s)	297, 324, 542
TaiI	ACGT	1 cut(s)	239
TasI	AATT	3 cut(s)	106, 402, 431
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	182
TscAI	CASTG	2 cut(s)	181, 220
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	311, 356
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	181, 220
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	2 cut(s)	89, 567
XspI	CTAG	2 cut(s)	315, 613
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.