Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005814

Physical Location & Seq

Genomic Coordinates Reverse (-)

31854461 .. 31855636

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1145400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGAAGAGAAAGGGTTTTGGGTTTGTTCAGTTTGACAAAGAGGACTCAGCTACGGTTCCTGCTAGCTTATGCTGTGGACTTTATACACAGGGTTGGTCGTACAGCCAGAGCTGGTCAATATGGACTTGTGACTAGCATGTATACAGAATCTAACCGTGACCTGGTTGCTGCAGTTCGTAGAGCAGGAGAACTTGATCTGCCTGTGGAGATGGCATTTAGCAGGAAAAGAAGCTTTGGAAATAAGCTTAAGAAAAAAGGCTCTTGGAAGAATATGCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

11.19

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59990 AT1G59990
fragaria_vesca	FvH4_4g35040 FvH4_4g35040 FvH4_4g35040 FvH4_4g35040
malus_domestica	MD00G1145400.v1.1 MD12G1027800.v1.1 MD13G1086600.v1.1 MD16G1086400.v1.1 MD16G1086500.v1.1
prunus_persica	Prupe.1G260000_v2.0.a1 Prupe.1G260000_v2.0.a1
pyrus_communis	pycom16g07460
rosa_chinensis	RchiOBHm_Chr4g0444581
rosa_laevigata	RLG00000005820
rosa_multiflora	Rmu_sc0003839.1_g000002 Rmu_sc0015511.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385030
rosa_rugosa	Rorug04G0354000 Rorug04G0354000 Rorug04G0354100 Rorug04G0354100
rosa_samantha	Rh4AG414000 Rh4BG425800 Rh4CG440400 Rh4DG421400
rosa_wichuraiana	Rw4G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	5 cut(s)	52, 68, 113, 234, 247
AluI	AGCT	5 cut(s)	52, 68, 113, 234, 247
ApeKI	GCWGC	1 cut(s)	170
AsuNHI	GCTAGC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	2 cut(s)	65, 135
BfmI	CTRYAG	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	164
BmtI	GCTAGC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	248
BssMI	GATC	1 cut(s)	196
BssNAI	GTATAC	1 cut(s)	144
Bst1107I	GTATAC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	57, 158
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	52, 68, 107, 113, 234, 247, 261
CviKI_1	RGCY	7 cut(s)	52, 68, 107, 113, 234, 247, 261
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	72, 86, 123, 140, 144, 275
FatI	CATG	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	65, 135
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	232, 245
HinfI	GANTC	2 cut(s)	46, 149
Hpy166II	GTNNAC	2 cut(s)	79, 144
Hpy8I	GTNNAC	2 cut(s)	79, 144
HpyCH4III	ACNGT	2 cut(s)	57, 158
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	74, 76, 99, 121, 149, 171, 176, 208, 216
Lsp1109I	GCAGC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	162
MaeI	CTAG	2 cut(s)	65, 135
MaeIII	GTNAC	2 cut(s)	130, 158
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	18, 280
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	2 cut(s)	130, 158
NspI	RCATGY	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	6 cut(s)	54, 70, 115, 165, 236, 249
SexAI	ACCWGGT	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SspMI	CTAG	2 cut(s)	65, 135
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	57, 158
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	130, 158
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	130, 158
Vha464I	CTTAAG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	2 cut(s)	65, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.