AT1G60060
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012163
Physical Location & Seq
Forward (+)
22139170 .. 22141815
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60060.2

Sequence Viewer

Length: 1161 bp
ATGGAAGAACATCTAAATCCATTAGCAGTGACTCATCTTCTTCAACACACACTAAGAAGCTTATGCATCCATGAGAACTCTCAATGGGTTTATGCTGTTTTCTGGAGGATCTTGCCTAGAAACTATCCTCCTCCCAAATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGGATCTTGGTTTGGGAAGATGGTTTTTGCAACTTTGCAGCTTCTGCCGCGGAAATGAGCTCCGGAGAAGGTAGTGGTGGCGGTGGTGGCTCAGCGGCTTATGGAAATAGTGATTTTCAACAATACCAAGGGCTTCAGCCTGAATTGTTCTTCAAGATGTCTCATGAAATCTACAATTATGGAGAAGGGTTGATAGGAAAAGTAGCTGCAGATCACAGTCACAAGTGGATTTATAAAGAACCTAATGACCAAGAGATTAACTTCTTATCTGCTTGGCATAATTCCGCTGACTCATACCCTAGGACATGGGAAGCTCAGTTTCAGTCTGGTATCAAAACCATTGCCTTGATTTCTGTTCGAGAAGGTGTTGTCCAGTTAGGAGCTGTTCACAAGGTGATAGAGGATTTAAGCTATGTTGTGATGCTAAGAAAAAAGCTGAGCTATATAGAGAGCATCCCTGGAGTACTTCTTCCTCACCCTTCTTCTTCTGGTTACCCTTTCATCAACGCTTCTCCTTCTGACACGTGGCATTTCCCGGGAGTCGCTCCTCCGCATCAGCAGCCTGAGCACCAGTTTTATCATTCTGACCACAACCACCGCTTTTTGATAGGCCACCACAACCAGCCACAAGCTGTAGGAGGGGCTGCACCGCCTCTACCGCTTTCGATGAAGATAACACCGTCAATGAGCAGCCTCGAGGCGCTTCTCTCGAAGCTCCCGTCGGTTGTACCTCCGGCGACACAACCAGGGTACTACCCGTTTCACCACAGTGCTAAAGAGGAAATGAGTCAAGAAGAACAAAACGATGCGTTTAGGGTTGAACGTAATGATTTGGTGGGTGAGGGTAGTAATAATCATAATCATAATAATAATTACAATAGTAATAATGATATTTATAACTATAGCAATAATTGCAGCAACAATAATTACGATAGAGAGAATAAGATCGGTGGGTTTCTTAGTGAGGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

386

Amino Acids

43.52

Weight (kDa)

5.9

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 19 - 166 2.9e-23 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 420, 1083
AbsI CCTCGAGG 1 cut(s) 881
AccII CGCG 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 9 cut(s) 234, 236, 267, 281, 471, 737, 784, 836, 845
AclWI GGATC 2 cut(s) 116, 197
AcuI CTGAAG 1 cut(s) 305
AcvI CACGTG 1 cut(s) 711
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 3 cut(s) 651, 915, 938
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 4 cut(s) 44, 305, 340, 1007
AjnI CCWGG 2 cut(s) 643, 931
AleI CACNNNNGTG 1 cut(s) 954
Alw21I GWGCWC 2 cut(s) 248, 756
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 2 cut(s) 116, 197
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 2 cut(s) 721, 881
Aor13HI TCCGGA 1 cut(s) 248
AoxI GGCC 1 cut(s) 796
ApeKI GCWGC 6 cut(s) 224, 392, 745, 830, 876, 1101
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AspA2I CCTAGG 1 cut(s) 485
AspLEI GCGC 1 cut(s) 889
AsuC2I CCSGG 2 cut(s) 722, 723
AsuHPI GGTGA 4 cut(s) 592, 653, 941, 1037
AvaI CYCGRG 2 cut(s) 721, 881
AvrII CCTAGG 1 cut(s) 485
BanII GRGCYC 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 248, 756
BbvI GCAGC 6 cut(s) 236, 379, 757, 817, 888, 1113
BccI CCATC 2 cut(s) 137, 200
BciT130I CCWGG 2 cut(s) 645, 933
BcnI CCSGG 2 cut(s) 722, 723
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 2 cut(s) 117, 486
BfmI CTRYAG 3 cut(s) 393, 819, 1087
BfoI RGCGCY 1 cut(s) 890
BisI GCNGC 8 cut(s) 225, 234, 282, 393, 746, 831, 877, 1102
BlnI CCTAGG 1 cut(s) 485
BlpI GCTNAGC 2 cut(s) 277, 623
BlsI GCNGC 8 cut(s) 226, 235, 283, 394, 747, 832, 878, 1103
BmcAI AGTACT 1 cut(s) 651
Bme1390I CCNGG 4 cut(s) 645, 722, 723, 933
BmeT110I CYCGRG 2 cut(s) 721, 881
BmrFI CCNGG 4 cut(s) 645, 722, 723, 933
BmsI GCATC 5 cut(s) 75, 597, 648, 748, 982
BpmI CTGGAG 2 cut(s) 124, 666
Bpu10I CCTNAGC 1 cut(s) 750
Bpu1102I GCTNAGC 2 cut(s) 277, 623
BpuMI CCSGG 2 cut(s) 722, 723
BsaAI YACGTR 1 cut(s) 711
BsaJI CCNNGG 6 cut(s) 234, 313, 485, 643, 721, 932
BsaWI WCCGGW 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 191, 559, 757
Bse3DI GCAATG 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 248
BseBI CCWGG 2 cut(s) 645, 933
BseDI CCNNGG 6 cut(s) 234, 313, 485, 643, 721, 932
BseGI GGATG 3 cut(s) 66, 148, 639
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 4 cut(s) 291, 515, 614, 741
BseNI ACTGG 3 cut(s) 191, 559, 757
BseRI GAGGAG 2 cut(s) 120, 723
BseXI GCAGC 6 cut(s) 236, 379, 757, 817, 888, 1113
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 798
BsiHKAI GWGCWC 2 cut(s) 248, 756
BsiHKCI CYCGRG 2 cut(s) 721, 881
BsiSI CCGG 3 cut(s) 249, 722, 920
BsmAI GTCTC 1 cut(s) 351
BsnI GGCC 1 cut(s) 798
BsoBI CYCGRG 2 cut(s) 721, 881
Bsp1286I GDGCHC 2 cut(s) 248, 756
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 5 cut(s) 108, 164, 189, 397, 1131
Bsp1720I GCTNAGC 2 cut(s) 277, 623
BspACI CCGC 9 cut(s) 234, 236, 267, 281, 471, 737, 784, 836, 845
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 4 cut(s) 290, 514, 615, 742
BspEI TCCGGA 1 cut(s) 248
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 2 cut(s) 116, 197
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 3 cut(s) 191, 559, 757
BssECI CCNNGG 6 cut(s) 234, 313, 485, 643, 721, 932
BssMI GATC 5 cut(s) 108, 164, 189, 397, 1131
BssT1I CCWWGG 2 cut(s) 313, 485
Bst2UI CCWGG 2 cut(s) 645, 933
Bst4CI ACNGT 3 cut(s) 404, 867, 956
BstAPI GCANNNNNTGC 2 cut(s) 230, 1098
BstBAI YACGTR 1 cut(s) 711
BstDEI CTNAG 7 cut(s) 53, 277, 501, 611, 623, 750, 1145
BstDSI CCRYGG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 677
BstF5I GGATG 3 cut(s) 66, 148, 639
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 5 cut(s) 111, 167, 192, 400, 1134
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 5 cut(s) 108, 164, 189, 397, 1131
BstMWI GCNNNNNNNGC 7 cut(s) 230, 233, 273, 745, 751, 844, 1098
BstNI CCWGG 2 cut(s) 645, 933
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 4 cut(s) 643, 720, 721, 931
BstSFI CTRYAG 3 cut(s) 393, 819, 1087
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 6 cut(s) 236, 379, 757, 817, 888, 1113
BstX2I RGATCY 2 cut(s) 108, 189
BstYI RGATCY 2 cut(s) 108, 189
BsuRI GGCC 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 3 cut(s) 66, 148, 639
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 961
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 889
Cfr42I CCGCGG 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 721
Csp6I GTAC 3 cut(s) 650, 914, 937
CviAII CATG 3 cut(s) 71, 350, 492
CviQI GTAC 3 cut(s) 650, 914, 937
DdeI CTNAG 7 cut(s) 53, 277, 501, 611, 623, 750, 1145
DpnI GATC 5 cut(s) 110, 166, 191, 399, 1133
DpnII GATC 5 cut(s) 108, 164, 189, 397, 1131
DraIII CACNNNGTG 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 313, 485
Eco24I GRGCYC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 305
Eco72I CACGTG 1 cut(s) 711
Eco88I CYCGRG 2 cut(s) 721, 881
Eco91I GGTNACC 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 643, 931
EcoT14I CCWWGG 2 cut(s) 313, 485
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 313, 485
FaeI CATG 3 cut(s) 74, 353, 495
FatI CATG 3 cut(s) 70, 349, 491
Fnu4HI GCNGC 8 cut(s) 225, 234, 282, 393, 746, 831, 877, 1102
FokI GGATG 3 cut(s) 53, 155, 626
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 8 cut(s) 225, 234, 282, 393, 746, 831, 877, 1102
FspBI CTAG 2 cut(s) 117, 486
GlaI GCGC 1 cut(s) 888
GluI GCNGC 8 cut(s) 225, 234, 282, 393, 746, 831, 877, 1102
GsuI CTGGAG 2 cut(s) 124, 666
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 1 cut(s) 798
HapII CCGG 3 cut(s) 249, 722, 920
HhaI GCGC 1 cut(s) 889
Hin1II CATG 3 cut(s) 74, 353, 495
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 4 cut(s) 31, 476, 726, 973
HpaII CCGG 3 cut(s) 249, 722, 920
HphI GGTGA 4 cut(s) 592, 653, 941, 1037
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 2 cut(s) 706, 772
Hpy188III TCNNGA 8 cut(s) 103, 168, 249, 340, 350, 545, 895, 977
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 910
HpyAV CCTTC 5 cut(s) 248, 365, 542, 675, 711
HpyCH4III ACNGT 3 cut(s) 404, 867, 956
HpyCH4IV ACGT 2 cut(s) 710, 1009
HpyCH4V TGCA 6 cut(s) 66, 216, 224, 395, 833, 1101
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 233, 273, 745, 751, 844, 1098
HpyF3I CTNAG 7 cut(s) 53, 277, 501, 611, 623, 750, 1145
HpySE526I ACGT 2 cut(s) 710, 1009
Hsp92II CATG 3 cut(s) 74, 353, 495
HspAI GCGC 1 cut(s) 887
Kpn2I TCCGGA 1 cut(s) 248
KspI CCGCGG 1 cut(s) 237
Kzo9I GATC 5 cut(s) 108, 164, 189, 397, 1131
LmnI GCTCC 5 cut(s) 152, 251, 566, 736, 906
Lsp1109I GCAGC 6 cut(s) 236, 379, 757, 817, 888, 1113
LweI GCATC 5 cut(s) 75, 597, 648, 748, 982
MaeI CTAG 2 cut(s) 117, 486
MaeII ACGT 2 cut(s) 710, 1009
MaeIII GTNAC 3 cut(s) 28, 404, 677
MalI GATC 5 cut(s) 110, 166, 191, 399, 1133
MboI GATC 5 cut(s) 108, 164, 189, 397, 1131
MflI RGATCY 2 cut(s) 108, 189
MhlI GDGCHC 2 cut(s) 248, 756
MluCI AATT 6 cut(s) 329, 361, 466, 1057, 1096, 1111
MlyI GAGTC 4 cut(s) 25, 470, 735, 982
Mph1103I ATGCAT 1 cut(s) 68
MroI TCCGGA 1 cut(s) 248
MseI TTAA 2 cut(s) 444, 593
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 3 cut(s) 236, 281, 473
MspI CCGG 3 cut(s) 249, 722, 920
MspR9I CCNGG 4 cut(s) 645, 722, 723, 933
MvaI CCWGG 2 cut(s) 645, 933
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 7 cut(s) 230, 233, 273, 745, 751, 844, 1098
NciI CCSGG 2 cut(s) 722, 723
NdeII GATC 5 cut(s) 108, 164, 189, 397, 1131
NlaIII CATG 3 cut(s) 74, 353, 495
NmuCI GTSAC 2 cut(s) 28, 404
NsiI ATGCAT 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 954
PaeR7I CTCGAG 1 cut(s) 881
PagI TCATGA 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 902
PkrI GCNGC 8 cut(s) 226, 235, 283, 394, 747, 832, 878, 1103
PleI GAGTC 4 cut(s) 25, 470, 734, 981
PmaCI CACGTG 1 cut(s) 711
PmlI CACGTG 1 cut(s) 711
PpsI GAGTC 4 cut(s) 25, 470, 734, 981
Ppu21I YACGTR 1 cut(s) 711
PsiI TTATAA 2 cut(s) 420, 1083
Psp124BI GAGCTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 643, 931
PspCI CACGTG 1 cut(s) 711
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 2 cut(s) 643, 931
PspXI VCTCGAGB 1 cut(s) 881
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 108, 189
RsaI GTAC 3 cut(s) 651, 915, 938
RsaNI GTAC 3 cut(s) 650, 914, 937
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 1 cut(s) 248
SacII CCGCGG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 444, 593
SatI GCNGC 8 cut(s) 225, 234, 282, 393, 746, 831, 877, 1102
Sau3AI GATC 5 cut(s) 108, 164, 189, 397, 1131
ScaI AGTACT 1 cut(s) 651
SchI GAGTC 4 cut(s) 25, 470, 735, 982
ScrFI CCNGG 4 cut(s) 645, 722, 723, 933
SduI GDGCHC 2 cut(s) 248, 756
SfaNI GCATC 5 cut(s) 75, 597, 648, 748, 982
SfcI CTRYAG 3 cut(s) 393, 819, 1087
Sfr274I CTCGAG 1 cut(s) 881
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 881
SmaI CCCGGG 1 cut(s) 723
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 6 cut(s) 329, 361, 466, 1057, 1096, 1111
SsiI CCGC 9 cut(s) 234, 236, 267, 281, 471, 737, 784, 836, 845
SspMI CTAG 2 cut(s) 117, 486
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 643, 720, 721, 931
StyI CCWWGG 2 cut(s) 313, 485
TaaI ACNGT 3 cut(s) 404, 867, 956
TaiI ACGT 2 cut(s) 713, 1012
TaqI TCGA 4 cut(s) 544, 851, 882, 896
TasI AATT 6 cut(s) 329, 361, 466, 1057, 1096, 1111
TatI WGTACW 1 cut(s) 649
TauI GCSGC 2 cut(s) 236, 284
Tru1I TTAA 2 cut(s) 444, 593
Tru9I TTAA 2 cut(s) 444, 593
TscAI CASTG 2 cut(s) 33, 961
TseFI GTSAC 2 cut(s) 28, 404
TseI GCWGC 6 cut(s) 224, 392, 745, 830, 876, 1101
Tsp45I GTSAC 2 cut(s) 28, 404
TspDTI ATGAA 3 cut(s) 366, 676, 869
TspMI CCCGGG 1 cut(s) 721
TspRI CASTG 2 cut(s) 33, 961
XhoI CTCGAG 1 cut(s) 881
XmaI CCCGGG 1 cut(s) 721
XmaJI CCTAGG 1 cut(s) 485
XspI CTAG 2 cut(s) 117, 486
ZrmI AGTACT 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.