Rorug04G0351000
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
52282465 .. 52285670
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0351000.1

Sequence Viewer

Length: 1839 bp
ATGCATGCATTGTCTTCAGCCATGGTTTTAAAGAAACTAGAGCAGTTTTTCTCACCAAAAAGAAACTTAATTTCTGGGTTTGTTTTGGGAATTGGAGTCTCTCTCATTGTACTAATTTTTGTGAGCAACTCCTTAAAGAGTAGTAGTCCTACTCCTACAGTAGAGGAACAGGGGTTTTATATTGTTTCTGTAAATTCCTCTTTTGTTTCAACTACTGCACATTCCATTGCCCCAGAATTGCAGAGTTCTACTGGAGAATCAAATGAGTCTGTAATTGCATTAATAGACGAAAAATTTGTGGAGGGCAATGAGAATGGTACGATGGTCTTCGAGAAGGCCCAGTTGGGAAATATTACAGAGGAAGTTGACGATAGAATAAGCTTTTGGGTTGAAGAAGAAGGTGTCCAACTGAAAGATGATAGCTTTGATTCATATGGGGAAGGAAGTGTTCTAGGGATTGCCCAGTTGGGGAATGTTACAGAGCAAGTGAAAGGTGAAAGCTTAGGGATTGAAGAAGGAAGTGTTCGACAAAAAGATGGCAACTTTGATTCATACGGTGAAGGAGGGATTGCCCATTTGGGGAATTCCTCTCAGATTTTGGAATTTGGAAGATTGCATGGTGCAGGTGGGAAAGCAACGGGGAAATCAAGCGTTGCTGGCAAAGAGGAAAACGTTGAAGCTTGTTTGAAAAACAATTCTAGGAGTGGGAATGGCATGGTCACAGAAGATGTAAAAAATGAAATTATTGGCTTTGATTCTCAAACTTGGGAAATGCAGAGTGATGATGACTCTGATCAGAAATGTGATATTTATGATGGTAAATGGGTAAGGGATGATTCAATGCCATACTATCCTGGAGGTTCTTGTCCGCACATTGATAGGGATTTTAATTGTCACCTCAATCGGAGGCCGGACGATGAGTTTTTAAAATGGAAATGGCAGCCATATGGGTGCGACATCTCAAGTCTGAATGCAACTGATTTTCTGGAGAGGTTGAGGGGAAAGAGGCTGGTTTTTGTGGGAGATTCGCTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTACGCCACACCGTCCGACACAAGAATAGAGTTTATGAGCTTTCAGGAAAGTCGCAATTTAAGAAGAGGGGCATTTATTCATTCAAGTTTGAGGAATACGATTGTTTTGTGGAATATGTTGGTTCACCATTCCTTGTTAGGCAATCATCATTCGCCGGTAAAGAGACCTTGAGGTTGGATTTGATGGACCAGACCACATCGAAGTATCGTGATGCTGATATTATAGTTTTCAACACTGCCCACTGGTGGAATTACTGGAAAACAGCTAGAGGACTACACTATTACCAAGAAGGCAACTATGTGCACCCAAGGCTAAAGGCTCTTGAAGCATACAAGAGAGCTCTCACCACTTGGGCTAGATGGGTGGACATGAACATCAATCCCAACCGGACTCGGGTTTTCTTCCGAGGATATGCATATACCCATTACAGTAATGGGCAATGGAACTCAGGAGGACATTGCCACAAAGAAACAGAACCAATCTTTAACGAAGCTCATTTATCGAAGTATCCTTCGAAAATGAGAACTGTAGAGTCTGTACTTCAAGGAATGAAAACTCCGGTGACGTATTTAAACATAAGTAGGCTTACTGATTACAGAAAAGATGCCCACCCTTCCATTTACAGAATGGAATACAAGACAAAAGAAGAAGAAATTGCTGCTGAACGATCTCAGGATTGCAACCATTGGTGCTTGCCGGGGGTTCCGGATACTTGGAACGAATTGCTATATGCTTCGCTTTTGAAGGACGGATGGGAATCAGGGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

612

Amino Acids

69.6

Weight (kDa)

5.67

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 266 - 319 5e-20 PMR5 N terminal Domain
PC-Esterase PF13839 322 - 600 1e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012163)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 614
AccIII TCCGGA 1 cut(s) 1771
AciI CCGC 1 cut(s) 869
AclI AACGTT 1 cut(s) 672
AcsI RAATTY 4 cut(s) 193, 293, 583, 602
AfaI GTAC 3 cut(s) 111, 319, 1605
AfiI CCNNNNNNNGG 4 cut(s) 468, 579, 1311, 1459
AflIII ACRYGT 1 cut(s) 1041
AjnI CCWGG 1 cut(s) 853
AjuI GAANNNNNNNTTGG 4 cut(s) 326, 358, 367, 399
AluBI AGCT 8 cut(s) 381, 423, 501, 680, 1105, 1331, 1406, 1559
AluI AGCT 8 cut(s) 381, 423, 501, 680, 1105, 1331, 1406, 1559
Alw21I GWGCWC 2 cut(s) 1371, 1408
Alw26I GTCTC 3 cut(s) 103, 1056, 1223
Alw44I GTGCAC 1 cut(s) 1367
Ama87I CYCGRG 1 cut(s) 1458
Aor13HI TCCGGA 1 cut(s) 1771
AoxI GGCC 2 cut(s) 336, 908
ApaLI GTGCAC 1 cut(s) 1367
ApeKI GCWGC 2 cut(s) 940, 1724
ApoI RAATTY 4 cut(s) 193, 293, 583, 602
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AseI ATTAAT 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 337, 1252
AsuC2I CCSGG 1 cut(s) 1764
AsuHPI GGTGA 7 cut(s) 45, 506, 569, 887, 1182, 1402, 1639
AsuII TTCGAA 1 cut(s) 1580
AvaI CYCGRG 1 cut(s) 1458
AvaII GGWCC 1 cut(s) 1252
BaeGI GKGCMC 1 cut(s) 1371
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanII GRGCYC 1 cut(s) 1408
BbsI GAAGAC 2 cut(s) 6, 319
Bbv12I GWGCWC 2 cut(s) 1371, 1408
BbvI GCAGC 2 cut(s) 952, 1711
BccI CCATC 6 cut(s) 316, 530, 809, 1243, 1419, 1812
BciT130I CCWGG 1 cut(s) 855
BciVI GTATCC 2 cut(s) 1584, 1768
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 1 cut(s) 1764
BcoDI GTCTC 3 cut(s) 103, 1056, 1223
BfaI CTAG 5 cut(s) 38, 452, 699, 1332, 1422
BfmI CTRYAG 2 cut(s) 156, 1593
BfuAI ACCTGC 1 cut(s) 614
BfuI GTATCC 2 cut(s) 1584, 1768
BisI GCNGC 2 cut(s) 941, 1725
BlsI GCNGC 2 cut(s) 942, 1726
Bme1390I CCNGG 2 cut(s) 855, 1764
Bme18I GGWCC 1 cut(s) 1252
BmeT110I CYCGRG 1 cut(s) 1458
BmgT120I GGNCC 2 cut(s) 337, 1252
BmiI GGNNCC 1 cut(s) 1770
BmrFI CCNGG 2 cut(s) 855, 1764
BmrI ACTGGG 2 cut(s) 334, 457
BmsI GCATC 2 cut(s) 1267, 1660
BmuI ACTGGG 2 cut(s) 334, 457
BpiI GAAGAC 2 cut(s) 6, 319
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 3 cut(s) 273, 876, 1007
Bpu10I CCTNAGC 1 cut(s) 502
Bpu14I TTCGAA 1 cut(s) 1580
BpuEI CTTGAG 2 cut(s) 946, 1255
BpuMI CCSGG 1 cut(s) 1764
BsaBI GATNNNNATC 1 cut(s) 1822
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 4 cut(s) 21, 1373, 1471, 1763
BsaWI WCCGGW 3 cut(s) 1452, 1624, 1771
Bsc4I CCNNNNNNNGG 4 cut(s) 468, 579, 1311, 1459
Bse118I RCCGGY 1 cut(s) 1220
Bse1I ACTGG 5 cut(s) 256, 340, 463, 1313, 1325
Bse3DI GCAATG 4 cut(s) 225, 313, 1511, 1522
Bse8I GATNNNNATC 1 cut(s) 1822
BseAI TCCGGA 1 cut(s) 1771
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 4 cut(s) 21, 1373, 1471, 1763
BseGI GGATG 2 cut(s) 838, 1823
BseJI GATNNNNATC 1 cut(s) 1822
BseLI CCNNNNNNNGG 4 cut(s) 468, 579, 1311, 1459
BseMI GCAATG 4 cut(s) 225, 313, 1511, 1522
BseMII CTCAG 3 cut(s) 605, 1527, 1751
BseNI ACTGG 5 cut(s) 256, 340, 463, 1313, 1325
BseSI GKGCMC 1 cut(s) 1371
BseXI GCAGC 2 cut(s) 952, 1711
BsgI GTGCAG 2 cut(s) 201, 642
BshFI GGCC 2 cut(s) 338, 910
BsiHKAI GWGCWC 2 cut(s) 1371, 1408
BsiHKCI CYCGRG 1 cut(s) 1458
BsiSI CCGG 6 cut(s) 911, 1221, 1453, 1625, 1763, 1772
BslI CCNNNNNNNGG 4 cut(s) 468, 579, 1311, 1459
BsmAI GTCTC 3 cut(s) 103, 1056, 1223
BsmI GAATGC 2 cut(s) 976, 1062
BsnI GGCC 2 cut(s) 338, 910
Bso31I GGTCTC 1 cut(s) 1223
BsoBI CYCGRG 1 cut(s) 1458
Bsp119I TTCGAA 1 cut(s) 1580
Bsp1286I GDGCHC 2 cut(s) 1371, 1408
Bsp13I TCCGGA 1 cut(s) 1771
Bsp143I GATC 2 cut(s) 793, 1733
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 869
BspANI GGCC 2 cut(s) 338, 910
BspCNI CTCAG 3 cut(s) 604, 1526, 1750
BspEI TCCGGA 1 cut(s) 1771
BspLI GGNNCC 1 cut(s) 1770
BspMI ACCTGC 1 cut(s) 614
BspT104I TTCGAA 1 cut(s) 1580
BspTNI GGTCTC 1 cut(s) 1223
BsrDI GCAATG 4 cut(s) 225, 313, 1511, 1522
BsrFI RCCGGY 1 cut(s) 1220
BsrI ACTGG 5 cut(s) 256, 340, 463, 1313, 1325
BssAI RCCGGY 1 cut(s) 1220
BssECI CCNNGG 4 cut(s) 21, 1373, 1471, 1763
BssMI GATC 2 cut(s) 793, 1733
BssT1I CCWWGG 2 cut(s) 21, 1373
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 5 cut(s) 160, 557, 1078, 1496, 1594
Bst6I CTCTTC 1 cut(s) 1124
BstBI TTCGAA 1 cut(s) 1580
BstC8I GCNNGC 3 cut(s) 6, 658, 1760
BstDEI CTNAG 4 cut(s) 502, 591, 1513, 1737
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 838, 1823
BstKTI GATC 2 cut(s) 796, 1736
BstMAI GTCTC 3 cut(s) 103, 1056, 1223
BstMBI GATC 2 cut(s) 793, 1733
BstMWI GCNNNNNNNGC 4 cut(s) 657, 1068, 1375, 1391
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 8, 1045
BstSCI CCNGG 2 cut(s) 853, 1762
BstSFI CTRYAG 2 cut(s) 156, 1593
BstSLI GKGCMC 1 cut(s) 1371
BstV1I GCAGC 2 cut(s) 952, 1711
BstV2I GAAGAC 2 cut(s) 6, 319
BsuI GTATCC 2 cut(s) 1584, 1768
BsuRI GGCC 2 cut(s) 338, 910
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 838, 1823
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 2 cut(s) 1299, 1306
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 3 cut(s) 6, 658, 1760
Cfr10I RCCGGY 1 cut(s) 1220
Cfr13I GGNCC 2 cut(s) 337, 1252
Csp6I GTAC 3 cut(s) 110, 318, 1604
CviAII CATG 6 cut(s) 5, 22, 617, 715, 1042, 1435
CviQI GTAC 3 cut(s) 110, 318, 1604
DdeI CTNAG 4 cut(s) 502, 591, 1513, 1737
DpnI GATC 2 cut(s) 795, 1735
DpnII GATC 2 cut(s) 793, 1733
DraI TTTAAA 3 cut(s) 30, 927, 1638
Eam1104I CTCTTC 1 cut(s) 1124
EarI CTCTTC 1 cut(s) 1124
Ecl136II GAGCTC 1 cut(s) 1406
Eco130I CCWWGG 2 cut(s) 21, 1373
Eco24I GRGCYC 1 cut(s) 1408
Eco31I GGTCTC 1 cut(s) 1223
Eco47I GGWCC 1 cut(s) 1252
Eco53kI GAGCTC 1 cut(s) 1406
Eco88I CYCGRG 1 cut(s) 1458
EcoICRI GAGCTC 1 cut(s) 1406
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 2 cut(s) 21, 1373
EcoT22I ATGCAT 3 cut(s) 6, 10, 1483
EcoT38I GRGCYC 1 cut(s) 1408
ErhI CCWWGG 2 cut(s) 21, 1373
FaeI CATG 6 cut(s) 8, 25, 620, 718, 1045, 1438
FatI CATG 6 cut(s) 4, 21, 616, 714, 1041, 1434
FauNDI CATATG 2 cut(s) 433, 946
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 2 cut(s) 941, 1725
FokI GGATG 2 cut(s) 845, 1830
FriOI GRGCYC 1 cut(s) 1408
Fsp4HI GCNGC 2 cut(s) 941, 1725
FspBI CTAG 5 cut(s) 38, 452, 699, 1332, 1422
GluI GCNGC 2 cut(s) 941, 1725
GsuI CTGGAG 3 cut(s) 273, 876, 1007
HaeIII GGCC 2 cut(s) 338, 910
HapII CCGG 6 cut(s) 911, 1221, 1453, 1625, 1763, 1772
Hin1II CATG 6 cut(s) 8, 25, 620, 718, 1045, 1438
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 3 cut(s) 379, 499, 678
HpaII CCGG 6 cut(s) 911, 1221, 1453, 1625, 1763, 1772
HphI GGTGA 7 cut(s) 45, 506, 569, 887, 1182, 1402, 1639
Hpy166II GTNNAC 4 cut(s) 367, 1190, 1369, 1432
Hpy188I TCNGA 7 cut(s) 594, 793, 798, 906, 969, 1082, 1472
Hpy188III TCNNGA 8 cut(s) 331, 986, 1110, 1274, 1388, 1515, 1739, 1772
Hpy8I GTNNAC 4 cut(s) 367, 1190, 1369, 1432
HpyAV CCTTC 9 cut(s) 328, 392, 434, 509, 554, 1349, 1587, 1689, 1804
HpyCH4III ACNGT 5 cut(s) 160, 557, 1078, 1496, 1594
HpyCH4IV ACGT 2 cut(s) 672, 1631
HpyF10VI GCNNNNNNNGC 4 cut(s) 657, 1068, 1375, 1391
HpyF3I CTNAG 4 cut(s) 502, 591, 1513, 1737
HpySE526I ACGT 2 cut(s) 672, 1631
Hsp92II CATG 6 cut(s) 8, 25, 620, 718, 1045, 1438
Kpn2I TCCGGA 1 cut(s) 1771
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 2 cut(s) 793, 1733
Lsp1109I GCAGC 2 cut(s) 952, 1711
LweI GCATC 2 cut(s) 1267, 1660
MaeI CTAG 5 cut(s) 38, 452, 699, 1332, 1422
MaeII ACGT 2 cut(s) 672, 1631
MaeIII GTNAC 4 cut(s) 475, 718, 893, 1627
MalI GATC 2 cut(s) 795, 1735
MboI GATC 2 cut(s) 793, 1733
MhlI GDGCHC 2 cut(s) 1371, 1408
MlyI GAGTC 6 cut(s) 105, 275, 782, 1058, 1450, 1607
MmeI TCCRAC 3 cut(s) 430, 1105, 1221
Mph1103I ATGCAT 3 cut(s) 6, 10, 1483
MroI TCCGGA 1 cut(s) 1771
MseI TTAA 9 cut(s) 29, 68, 134, 281, 888, 926, 1125, 1551, 1637
MslI CAYNNNNRTG 1 cut(s) 949
MspI CCGG 6 cut(s) 911, 1221, 1453, 1625, 1763, 1772
MspR9I CCNGG 2 cut(s) 855, 1764
Mva1269I GAATGC 2 cut(s) 976, 1062
MvaI CCWGG 1 cut(s) 855
MwoI GCNNNNNNNGC 4 cut(s) 657, 1068, 1375, 1391
NciI CCSGG 1 cut(s) 1764
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 2 cut(s) 433, 946
NdeII GATC 2 cut(s) 793, 1733
NlaIII CATG 6 cut(s) 8, 25, 620, 718, 1045, 1438
NlaIV GGNNCC 1 cut(s) 1770
NmuCI GTSAC 3 cut(s) 718, 893, 1627
NsiI ATGCAT 3 cut(s) 6, 10, 1483
NspI RCATGY 2 cut(s) 8, 1045
NspV TTCGAA 1 cut(s) 1580
PaeI GCATGC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 614
PciI ACATGT 1 cut(s) 1041
PctI GAATGC 2 cut(s) 976, 1062
PfeI GAWTC 7 cut(s) 257, 428, 548, 755, 836, 1025, 1823
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 2 cut(s) 942, 1726
PleI GAGTC 6 cut(s) 104, 274, 782, 1057, 1450, 1606
PpsI GAGTC 6 cut(s) 104, 274, 782, 1057, 1450, 1606
PscI ACATGT 1 cut(s) 1041
PshBI ATTAAT 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 1408
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 1 cut(s) 1770
PspPI GGNCC 2 cut(s) 337, 1252
RsaI GTAC 3 cut(s) 111, 319, 1605
RsaNI GTAC 3 cut(s) 110, 318, 1604
RseI CAYNNNNRTG 1 cut(s) 949
SacI GAGCTC 1 cut(s) 1408
SaqAI TTAA 9 cut(s) 29, 68, 134, 281, 888, 926, 1125, 1551, 1637
SatI GCNGC 2 cut(s) 941, 1725
Sau3AI GATC 2 cut(s) 793, 1733
Sau96I GGNCC 2 cut(s) 337, 1252
SchI GAGTC 6 cut(s) 105, 275, 782, 1058, 1450, 1607
ScrFI CCNGG 2 cut(s) 855, 1764
SduI GDGCHC 2 cut(s) 1371, 1408
SfaNI GCATC 2 cut(s) 1267, 1660
SfcI CTRYAG 2 cut(s) 156, 1593
SfuI TTCGAA 1 cut(s) 1580
SinI GGWCC 1 cut(s) 1252
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 961, 1234
SmoI CTYRAG 2 cut(s) 961, 1234
SphI GCATGC 1 cut(s) 8
SsiI CCGC 1 cut(s) 869
SspI AATATT 1 cut(s) 352
SspMI CTAG 5 cut(s) 38, 452, 699, 1332, 1422
SstI GAGCTC 1 cut(s) 1408
StyD4I CCNGG 2 cut(s) 853, 1762
StyI CCWWGG 2 cut(s) 21, 1373
TaaI ACNGT 5 cut(s) 160, 557, 1078, 1496, 1594
TaiI ACGT 2 cut(s) 675, 1634
TaqI TCGA 5 cut(s) 330, 526, 1265, 1568, 1580
TatI WGTACW 2 cut(s) 109, 1603
TfiI GAWTC 7 cut(s) 257, 428, 548, 755, 836, 1025, 1823
Tru1I TTAA 9 cut(s) 29, 68, 134, 281, 888, 926, 1125, 1551, 1637
Tru9I TTAA 9 cut(s) 29, 68, 134, 281, 888, 926, 1125, 1551, 1637
TscAI CASTG 2 cut(s) 1306, 1313
TseFI GTSAC 3 cut(s) 718, 893, 1627
TseI GCWGC 2 cut(s) 940, 1724
Tsp45I GTSAC 3 cut(s) 718, 893, 1627
TspDTI ATGAA 6 cut(s) 420, 540, 753, 1134, 1451, 1631
TspGWI ACGGA 1 cut(s) 1830
TspRI CASTG 2 cut(s) 1306, 1313
VneI GTGCAC 1 cut(s) 1367
VpaK11BI GGWCC 1 cut(s) 1252
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 4 cut(s) 193, 293, 583, 602
XceI RCATGY 2 cut(s) 8, 1045
XcmI CCANNNNNNNNNTGG 2 cut(s) 1496, 1690
XspI CTAG 5 cut(s) 38, 452, 699, 1332, 1422
Zsp2I ATGCAT 3 cut(s) 6, 10, 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.