bHLH-MYC and R2R3-MYB transcription factors N-terminal
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60060 AT1G60060 |
| fragaria_vesca | FvH4_4g34860 |
| malus_domestica | MD13G1088900.v1.1 MD16G1089000.v1.1 |
| prunus_persica | Prupe.1G256900_v2.0.a1 |
| pyrus_communis | pycom13g07700 pycom16g07620 |
| rosa_chinensis | RchiOBHm_Chr4g0444251 |
| rosa_laevigata | RLG00000005846 |
| rosa_multiflora | Rmu_sc0002841.1_g000017 |
| rosa_roxburghii | Rroxscaffold_5G00384820 |
| rosa_rugosa | Rorug04G0350900 Rorug04G0351000 |
| rosa_samantha | Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400 |
| rosa_wichuraiana | Rw4G035360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 614 |
| Acc36I | ACCTGC | 1 cut(s) | 614 |
| AccIII | TCCGGA | 1 cut(s) | 1771 |
| AciI | CCGC | 1 cut(s) | 869 |
| AclI | AACGTT | 1 cut(s) | 672 |
| AcsI | RAATTY | 4 cut(s) | 193, 293, 583, 602 |
| AfaI | GTAC | 3 cut(s) | 111, 319, 1605 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 468, 579, 1311, 1459 |
| AflIII | ACRYGT | 1 cut(s) | 1041 |
| AjnI | CCWGG | 1 cut(s) | 853 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 326, 358, 367, 399 |
| AluBI | AGCT | 8 cut(s) | 381, 423, 501, 680, 1105, 1331, 1406, 1559 |
| AluI | AGCT | 8 cut(s) | 381, 423, 501, 680, 1105, 1331, 1406, 1559 |
| Alw21I | GWGCWC | 2 cut(s) | 1371, 1408 |
| Alw26I | GTCTC | 3 cut(s) | 103, 1056, 1223 |
| Alw44I | GTGCAC | 1 cut(s) | 1367 |
| Ama87I | CYCGRG | 1 cut(s) | 1458 |
| Aor13HI | TCCGGA | 1 cut(s) | 1771 |
| AoxI | GGCC | 2 cut(s) | 336, 908 |
| ApaLI | GTGCAC | 1 cut(s) | 1367 |
| ApeKI | GCWGC | 2 cut(s) | 940, 1724 |
| ApoI | RAATTY | 4 cut(s) | 193, 293, 583, 602 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 278, 310 |
| AseI | ATTAAT | 1 cut(s) | 281 |
| AspS9I | GGNCC | 2 cut(s) | 337, 1252 |
| AsuC2I | CCSGG | 1 cut(s) | 1764 |
| AsuHPI | GGTGA | 7 cut(s) | 45, 506, 569, 887, 1182, 1402, 1639 |
| AsuII | TTCGAA | 1 cut(s) | 1580 |
| AvaI | CYCGRG | 1 cut(s) | 1458 |
| AvaII | GGWCC | 1 cut(s) | 1252 |
| BaeGI | GKGCMC | 1 cut(s) | 1371 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 309, 342 |
| BanII | GRGCYC | 1 cut(s) | 1408 |
| BbsI | GAAGAC | 2 cut(s) | 6, 319 |
| Bbv12I | GWGCWC | 2 cut(s) | 1371, 1408 |
| BbvI | GCAGC | 2 cut(s) | 952, 1711 |
| BccI | CCATC | 6 cut(s) | 316, 530, 809, 1243, 1419, 1812 |
| BciT130I | CCWGG | 1 cut(s) | 855 |
| BciVI | GTATCC | 2 cut(s) | 1584, 1768 |
| BclI | TGATCA | 1 cut(s) | 793 |
| BcnI | CCSGG | 1 cut(s) | 1764 |
| BcoDI | GTCTC | 3 cut(s) | 103, 1056, 1223 |
| BfaI | CTAG | 5 cut(s) | 38, 452, 699, 1332, 1422 |
| BfmI | CTRYAG | 2 cut(s) | 156, 1593 |
| BfuAI | ACCTGC | 1 cut(s) | 614 |
| BfuI | GTATCC | 2 cut(s) | 1584, 1768 |
| BisI | GCNGC | 2 cut(s) | 941, 1725 |
| BlsI | GCNGC | 2 cut(s) | 942, 1726 |
| Bme1390I | CCNGG | 2 cut(s) | 855, 1764 |
| Bme18I | GGWCC | 1 cut(s) | 1252 |
| BmeT110I | CYCGRG | 1 cut(s) | 1458 |
| BmgT120I | GGNCC | 2 cut(s) | 337, 1252 |
| BmiI | GGNNCC | 1 cut(s) | 1770 |
| BmrFI | CCNGG | 2 cut(s) | 855, 1764 |
| BmrI | ACTGGG | 2 cut(s) | 334, 457 |
| BmsI | GCATC | 2 cut(s) | 1267, 1660 |
| BmuI | ACTGGG | 2 cut(s) | 334, 457 |
| BpiI | GAAGAC | 2 cut(s) | 6, 319 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 87, 119 |
| BpmI | CTGGAG | 3 cut(s) | 273, 876, 1007 |
| Bpu10I | CCTNAGC | 1 cut(s) | 502 |
| Bpu14I | TTCGAA | 1 cut(s) | 1580 |
| BpuEI | CTTGAG | 2 cut(s) | 946, 1255 |
| BpuMI | CCSGG | 1 cut(s) | 1764 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1822 |
| BsaI | GGTCTC | 1 cut(s) | 1223 |
| BsaJI | CCNNGG | 4 cut(s) | 21, 1373, 1471, 1763 |
| BsaWI | WCCGGW | 3 cut(s) | 1452, 1624, 1771 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 468, 579, 1311, 1459 |
| Bse118I | RCCGGY | 1 cut(s) | 1220 |
| Bse1I | ACTGG | 5 cut(s) | 256, 340, 463, 1313, 1325 |
| Bse3DI | GCAATG | 4 cut(s) | 225, 313, 1511, 1522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1822 |
| BseAI | TCCGGA | 1 cut(s) | 1771 |
| BseBI | CCWGG | 1 cut(s) | 855 |
| BseDI | CCNNGG | 4 cut(s) | 21, 1373, 1471, 1763 |
| BseGI | GGATG | 2 cut(s) | 838, 1823 |
| BseJI | GATNNNNATC | 1 cut(s) | 1822 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 468, 579, 1311, 1459 |
| BseMI | GCAATG | 4 cut(s) | 225, 313, 1511, 1522 |
| BseMII | CTCAG | 3 cut(s) | 605, 1527, 1751 |
| BseNI | ACTGG | 5 cut(s) | 256, 340, 463, 1313, 1325 |
| BseSI | GKGCMC | 1 cut(s) | 1371 |
| BseXI | GCAGC | 2 cut(s) | 952, 1711 |
| BsgI | GTGCAG | 2 cut(s) | 201, 642 |
| BshFI | GGCC | 2 cut(s) | 338, 910 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1371, 1408 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1458 |
| BsiSI | CCGG | 6 cut(s) | 911, 1221, 1453, 1625, 1763, 1772 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 468, 579, 1311, 1459 |
| BsmAI | GTCTC | 3 cut(s) | 103, 1056, 1223 |
| BsmI | GAATGC | 2 cut(s) | 976, 1062 |
| BsnI | GGCC | 2 cut(s) | 338, 910 |
| Bso31I | GGTCTC | 1 cut(s) | 1223 |
| BsoBI | CYCGRG | 1 cut(s) | 1458 |
| Bsp119I | TTCGAA | 1 cut(s) | 1580 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1371, 1408 |
| Bsp13I | TCCGGA | 1 cut(s) | 1771 |
| Bsp143I | GATC | 2 cut(s) | 793, 1733 |
| Bsp19I | CCATGG | 1 cut(s) | 21 |
| BspACI | CCGC | 1 cut(s) | 869 |
| BspANI | GGCC | 2 cut(s) | 338, 910 |
| BspCNI | CTCAG | 3 cut(s) | 604, 1526, 1750 |
| BspEI | TCCGGA | 1 cut(s) | 1771 |
| BspLI | GGNNCC | 1 cut(s) | 1770 |
| BspMI | ACCTGC | 1 cut(s) | 614 |
| BspT104I | TTCGAA | 1 cut(s) | 1580 |
| BspTNI | GGTCTC | 1 cut(s) | 1223 |
| BsrDI | GCAATG | 4 cut(s) | 225, 313, 1511, 1522 |
| BsrFI | RCCGGY | 1 cut(s) | 1220 |
| BsrI | ACTGG | 5 cut(s) | 256, 340, 463, 1313, 1325 |
| BssAI | RCCGGY | 1 cut(s) | 1220 |
| BssECI | CCNNGG | 4 cut(s) | 21, 1373, 1471, 1763 |
| BssMI | GATC | 2 cut(s) | 793, 1733 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 1373 |
| Bst2UI | CCWGG | 1 cut(s) | 855 |
| Bst4CI | ACNGT | 5 cut(s) | 160, 557, 1078, 1496, 1594 |
| Bst6I | CTCTTC | 1 cut(s) | 1124 |
| BstBI | TTCGAA | 1 cut(s) | 1580 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 658, 1760 |
| BstDEI | CTNAG | 4 cut(s) | 502, 591, 1513, 1737 |
| BstDSI | CCRYGG | 1 cut(s) | 21 |
| BstF5I | GGATG | 2 cut(s) | 838, 1823 |
| BstKTI | GATC | 2 cut(s) | 796, 1736 |
| BstMAI | GTCTC | 3 cut(s) | 103, 1056, 1223 |
| BstMBI | GATC | 2 cut(s) | 793, 1733 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 657, 1068, 1375, 1391 |
| BstNI | CCWGG | 1 cut(s) | 855 |
| BstNSI | RCATGY | 2 cut(s) | 8, 1045 |
| BstSCI | CCNGG | 2 cut(s) | 853, 1762 |
| BstSFI | CTRYAG | 2 cut(s) | 156, 1593 |
| BstSLI | GKGCMC | 1 cut(s) | 1371 |
| BstV1I | GCAGC | 2 cut(s) | 952, 1711 |
| BstV2I | GAAGAC | 2 cut(s) | 6, 319 |
| BsuI | GTATCC | 2 cut(s) | 1584, 1768 |
| BsuRI | GGCC | 2 cut(s) | 338, 910 |
| BtgI | CCRYGG | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 838, 1823 |
| BtsI | GCAGTG | 1 cut(s) | 1299 |
| BtsIMutI | CAGTG | 2 cut(s) | 1299, 1306 |
| BveI | ACCTGC | 1 cut(s) | 614 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 658, 1760 |
| Cfr10I | RCCGGY | 1 cut(s) | 1220 |
| Cfr13I | GGNCC | 2 cut(s) | 337, 1252 |
| Csp6I | GTAC | 3 cut(s) | 110, 318, 1604 |
| CviAII | CATG | 6 cut(s) | 5, 22, 617, 715, 1042, 1435 |
| CviQI | GTAC | 3 cut(s) | 110, 318, 1604 |
| DdeI | CTNAG | 4 cut(s) | 502, 591, 1513, 1737 |
| DpnI | GATC | 2 cut(s) | 795, 1735 |
| DpnII | GATC | 2 cut(s) | 793, 1733 |
| DraI | TTTAAA | 3 cut(s) | 30, 927, 1638 |
| Eam1104I | CTCTTC | 1 cut(s) | 1124 |
| EarI | CTCTTC | 1 cut(s) | 1124 |
| Ecl136II | GAGCTC | 1 cut(s) | 1406 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 1373 |
| Eco24I | GRGCYC | 1 cut(s) | 1408 |
| Eco31I | GGTCTC | 1 cut(s) | 1223 |
| Eco47I | GGWCC | 1 cut(s) | 1252 |
| Eco53kI | GAGCTC | 1 cut(s) | 1406 |
| Eco88I | CYCGRG | 1 cut(s) | 1458 |
| EcoICRI | GAGCTC | 1 cut(s) | 1406 |
| EcoRI | GAATTC | 1 cut(s) | 583 |
| EcoRII | CCWGG | 1 cut(s) | 853 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 1373 |
| EcoT22I | ATGCAT | 3 cut(s) | 6, 10, 1483 |
| EcoT38I | GRGCYC | 1 cut(s) | 1408 |
| ErhI | CCWWGG | 2 cut(s) | 21, 1373 |
| FaeI | CATG | 6 cut(s) | 8, 25, 620, 718, 1045, 1438 |
| FatI | CATG | 6 cut(s) | 4, 21, 616, 714, 1041, 1434 |
| FauNDI | CATATG | 2 cut(s) | 433, 946 |
| FbaI | TGATCA | 1 cut(s) | 793 |
| Fnu4HI | GCNGC | 2 cut(s) | 941, 1725 |
| FokI | GGATG | 2 cut(s) | 845, 1830 |
| FriOI | GRGCYC | 1 cut(s) | 1408 |
| Fsp4HI | GCNGC | 2 cut(s) | 941, 1725 |
| FspBI | CTAG | 5 cut(s) | 38, 452, 699, 1332, 1422 |
| GluI | GCNGC | 2 cut(s) | 941, 1725 |
| GsuI | CTGGAG | 3 cut(s) | 273, 876, 1007 |
| HaeIII | GGCC | 2 cut(s) | 338, 910 |
| HapII | CCGG | 6 cut(s) | 911, 1221, 1453, 1625, 1763, 1772 |
| Hin1II | CATG | 6 cut(s) | 8, 25, 620, 718, 1045, 1438 |
| HincII | GTYRAC | 1 cut(s) | 367 |
| HindII | GTYRAC | 1 cut(s) | 367 |
| HindIII | AAGCTT | 3 cut(s) | 379, 499, 678 |
| HpaII | CCGG | 6 cut(s) | 911, 1221, 1453, 1625, 1763, 1772 |
| HphI | GGTGA | 7 cut(s) | 45, 506, 569, 887, 1182, 1402, 1639 |
| Hpy166II | GTNNAC | 4 cut(s) | 367, 1190, 1369, 1432 |
| Hpy188I | TCNGA | 7 cut(s) | 594, 793, 798, 906, 969, 1082, 1472 |
| Hpy188III | TCNNGA | 8 cut(s) | 331, 986, 1110, 1274, 1388, 1515, 1739, 1772 |
| Hpy8I | GTNNAC | 4 cut(s) | 367, 1190, 1369, 1432 |
| HpyAV | CCTTC | 9 cut(s) | 328, 392, 434, 509, 554, 1349, 1587, 1689, 1804 |
| HpyCH4III | ACNGT | 5 cut(s) | 160, 557, 1078, 1496, 1594 |
| HpyCH4IV | ACGT | 2 cut(s) | 672, 1631 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 657, 1068, 1375, 1391 |
| HpyF3I | CTNAG | 4 cut(s) | 502, 591, 1513, 1737 |
| HpySE526I | ACGT | 2 cut(s) | 672, 1631 |
| Hsp92II | CATG | 6 cut(s) | 8, 25, 620, 718, 1045, 1438 |
| Kpn2I | TCCGGA | 1 cut(s) | 1771 |
| Ksp22I | TGATCA | 1 cut(s) | 793 |
| Kzo9I | GATC | 2 cut(s) | 793, 1733 |
| Lsp1109I | GCAGC | 2 cut(s) | 952, 1711 |
| LweI | GCATC | 2 cut(s) | 1267, 1660 |
| MaeI | CTAG | 5 cut(s) | 38, 452, 699, 1332, 1422 |
| MaeII | ACGT | 2 cut(s) | 672, 1631 |
| MaeIII | GTNAC | 4 cut(s) | 475, 718, 893, 1627 |
| MalI | GATC | 2 cut(s) | 795, 1735 |
| MboI | GATC | 2 cut(s) | 793, 1733 |
| MhlI | GDGCHC | 2 cut(s) | 1371, 1408 |
| MlyI | GAGTC | 6 cut(s) | 105, 275, 782, 1058, 1450, 1607 |
| MmeI | TCCRAC | 3 cut(s) | 430, 1105, 1221 |
| Mph1103I | ATGCAT | 3 cut(s) | 6, 10, 1483 |
| MroI | TCCGGA | 1 cut(s) | 1771 |
| MseI | TTAA | 9 cut(s) | 29, 68, 134, 281, 888, 926, 1125, 1551, 1637 |
| MslI | CAYNNNNRTG | 1 cut(s) | 949 |
| MspI | CCGG | 6 cut(s) | 911, 1221, 1453, 1625, 1763, 1772 |
| MspR9I | CCNGG | 2 cut(s) | 855, 1764 |
| Mva1269I | GAATGC | 2 cut(s) | 976, 1062 |
| MvaI | CCWGG | 1 cut(s) | 855 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 657, 1068, 1375, 1391 |
| NciI | CCSGG | 1 cut(s) | 1764 |
| NcoI | CCATGG | 1 cut(s) | 21 |
| NdeI | CATATG | 2 cut(s) | 433, 946 |
| NdeII | GATC | 2 cut(s) | 793, 1733 |
| NlaIII | CATG | 6 cut(s) | 8, 25, 620, 718, 1045, 1438 |
| NlaIV | GGNNCC | 1 cut(s) | 1770 |
| NmuCI | GTSAC | 3 cut(s) | 718, 893, 1627 |
| NsiI | ATGCAT | 3 cut(s) | 6, 10, 1483 |
| NspI | RCATGY | 2 cut(s) | 8, 1045 |
| NspV | TTCGAA | 1 cut(s) | 1580 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PaqCI | CACCTGC | 1 cut(s) | 614 |
| PciI | ACATGT | 1 cut(s) | 1041 |
| PctI | GAATGC | 2 cut(s) | 976, 1062 |
| PfeI | GAWTC | 7 cut(s) | 257, 428, 548, 755, 836, 1025, 1823 |
| PfoI | TCCNGGA | 1 cut(s) | 853 |
| PkrI | GCNGC | 2 cut(s) | 942, 1726 |
| PleI | GAGTC | 6 cut(s) | 104, 274, 782, 1057, 1450, 1606 |
| PpsI | GAGTC | 6 cut(s) | 104, 274, 782, 1057, 1450, 1606 |
| PscI | ACATGT | 1 cut(s) | 1041 |
| PshBI | ATTAAT | 1 cut(s) | 281 |
| Psp124BI | GAGCTC | 1 cut(s) | 1408 |
| Psp1406I | AACGTT | 1 cut(s) | 672 |
| Psp6I | CCWGG | 1 cut(s) | 853 |
| PspGI | CCWGG | 1 cut(s) | 853 |
| PspN4I | GGNNCC | 1 cut(s) | 1770 |
| PspPI | GGNCC | 2 cut(s) | 337, 1252 |
| RsaI | GTAC | 3 cut(s) | 111, 319, 1605 |
| RsaNI | GTAC | 3 cut(s) | 110, 318, 1604 |
| RseI | CAYNNNNRTG | 1 cut(s) | 949 |
| SacI | GAGCTC | 1 cut(s) | 1408 |
| SaqAI | TTAA | 9 cut(s) | 29, 68, 134, 281, 888, 926, 1125, 1551, 1637 |
| SatI | GCNGC | 2 cut(s) | 941, 1725 |
| Sau3AI | GATC | 2 cut(s) | 793, 1733 |
| Sau96I | GGNCC | 2 cut(s) | 337, 1252 |
| SchI | GAGTC | 6 cut(s) | 105, 275, 782, 1058, 1450, 1607 |
| ScrFI | CCNGG | 2 cut(s) | 855, 1764 |
| SduI | GDGCHC | 2 cut(s) | 1371, 1408 |
| SfaNI | GCATC | 2 cut(s) | 1267, 1660 |
| SfcI | CTRYAG | 2 cut(s) | 156, 1593 |
| SfuI | TTCGAA | 1 cut(s) | 1580 |
| SinI | GGWCC | 1 cut(s) | 1252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 949 |
| SmlI | CTYRAG | 2 cut(s) | 961, 1234 |
| SmoI | CTYRAG | 2 cut(s) | 961, 1234 |
| SphI | GCATGC | 1 cut(s) | 8 |
| SsiI | CCGC | 1 cut(s) | 869 |
| SspI | AATATT | 1 cut(s) | 352 |
| SspMI | CTAG | 5 cut(s) | 38, 452, 699, 1332, 1422 |
| SstI | GAGCTC | 1 cut(s) | 1408 |
| StyD4I | CCNGG | 2 cut(s) | 853, 1762 |
| StyI | CCWWGG | 2 cut(s) | 21, 1373 |
| TaaI | ACNGT | 5 cut(s) | 160, 557, 1078, 1496, 1594 |
| TaiI | ACGT | 2 cut(s) | 675, 1634 |
| TaqI | TCGA | 5 cut(s) | 330, 526, 1265, 1568, 1580 |
| TatI | WGTACW | 2 cut(s) | 109, 1603 |
| TfiI | GAWTC | 7 cut(s) | 257, 428, 548, 755, 836, 1025, 1823 |
| Tru1I | TTAA | 9 cut(s) | 29, 68, 134, 281, 888, 926, 1125, 1551, 1637 |
| Tru9I | TTAA | 9 cut(s) | 29, 68, 134, 281, 888, 926, 1125, 1551, 1637 |
| TscAI | CASTG | 2 cut(s) | 1306, 1313 |
| TseFI | GTSAC | 3 cut(s) | 718, 893, 1627 |
| TseI | GCWGC | 2 cut(s) | 940, 1724 |
| Tsp45I | GTSAC | 3 cut(s) | 718, 893, 1627 |
| TspDTI | ATGAA | 6 cut(s) | 420, 540, 753, 1134, 1451, 1631 |
| TspGWI | ACGGA | 1 cut(s) | 1830 |
| TspRI | CASTG | 2 cut(s) | 1306, 1313 |
| VneI | GTGCAC | 1 cut(s) | 1367 |
| VpaK11BI | GGWCC | 1 cut(s) | 1252 |
| VspI | ATTAAT | 1 cut(s) | 281 |
| XapI | RAATTY | 4 cut(s) | 193, 293, 583, 602 |
| XceI | RCATGY | 2 cut(s) | 8, 1045 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1496, 1690 |
| XspI | CTAG | 5 cut(s) | 38, 452, 699, 1332, 1422 |
| Zsp2I | ATGCAT | 3 cut(s) | 6, 10, 1483 |