bHLH-MYC and R2R3-MYB transcription factors N-terminal
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60060 AT1G60060 |
| fragaria_vesca | FvH4_4g34860 |
| malus_domestica | MD13G1088900.v1.1 MD16G1089000.v1.1 |
| prunus_persica | Prupe.1G256900_v2.0.a1 |
| pyrus_communis | pycom13g07700 pycom16g07620 |
| rosa_chinensis | RchiOBHm_Chr4g0444251 |
| rosa_laevigata | RLG00000005846 |
| rosa_multiflora | Rmu_sc0002841.1_g000017 |
| rosa_roxburghii | Rroxscaffold_5G00384820 |
| rosa_rugosa | Rorug04G0350900 Rorug04G0351000 |
| rosa_samantha | Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400 |
| rosa_wichuraiana | Rw4G035360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 116, 683, 752, 855 |
| AcoI | YGGCCR | 1 cut(s) | 753 |
| AdeI | CACNNNGTG | 1 cut(s) | 304 |
| AflII | CTTAAG | 1 cut(s) | 13 |
| AgsI | TTSAA | 5 cut(s) | 29, 64, 311, 412, 614 |
| AluBI | AGCT | 5 cut(s) | 55, 293, 321, 351, 631 |
| AluI | AGCT | 5 cut(s) | 55, 293, 321, 351, 631 |
| Alw26I | GTCTC | 1 cut(s) | 758 |
| AoxI | GGCC | 3 cut(s) | 40, 753, 809 |
| ApeKI | GCWGC | 1 cut(s) | 606 |
| AspS9I | GGNCC | 2 cut(s) | 443, 716 |
| AsuC2I | CCSGG | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 3 cut(s) | 316, 377, 845 |
| AvaII | GGWCC | 2 cut(s) | 443, 716 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 335, 367 |
| BbsI | GAAGAC | 1 cut(s) | 318 |
| BbvI | GCAGC | 1 cut(s) | 618 |
| BccI | CCATC | 4 cut(s) | 177, 397, 406, 894 |
| BceAI | ACGGC | 1 cut(s) | 796 |
| BciVI | GTATCC | 1 cut(s) | 132 |
| BclI | TGATCA | 3 cut(s) | 157, 541, 772 |
| BcnI | CCSGG | 1 cut(s) | 369 |
| BcoDI | GTCTC | 1 cut(s) | 758 |
| BfaI | CTAG | 2 cut(s) | 210, 564 |
| BfrI | CTTAAG | 1 cut(s) | 13 |
| BfuI | GTATCC | 1 cut(s) | 132 |
| BglII | AGATCT | 1 cut(s) | 78 |
| BisI | GCNGC | 4 cut(s) | 117, 607, 683, 753 |
| BlsI | GCNGC | 4 cut(s) | 118, 608, 684, 754 |
| Bme1390I | CCNGG | 1 cut(s) | 369 |
| Bme18I | GGWCC | 2 cut(s) | 443, 716 |
| BmgT120I | GGNCC | 2 cut(s) | 443, 716 |
| BmiI | GGNNCC | 1 cut(s) | 445 |
| BmrFI | CCNGG | 1 cut(s) | 369 |
| BmrI | ACTGGG | 1 cut(s) | 691 |
| BmsI | GCATC | 1 cut(s) | 372 |
| BmuI | ACTGGG | 1 cut(s) | 691 |
| BpiI | GAAGAC | 1 cut(s) | 318 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 363, 395 |
| Bpu10I | CCTNAGC | 1 cut(s) | 51 |
| BpuEI | CTTGAG | 1 cut(s) | 337 |
| BpuMI | CCSGG | 1 cut(s) | 369 |
| BsaBI | GATNNNNATC | 2 cut(s) | 423, 663 |
| BsaJI | CCNNGG | 2 cut(s) | 367, 490 |
| Bse1I | ACTGG | 2 cut(s) | 232, 697 |
| Bse3DI | GCAATG | 1 cut(s) | 741 |
| Bse8I | GATNNNNATC | 2 cut(s) | 423, 663 |
| BseDI | CCNNGG | 2 cut(s) | 367, 490 |
| BseGI | GGATG | 6 cut(s) | 188, 363, 398, 466, 544, 673 |
| BseJI | GATNNNNATC | 2 cut(s) | 423, 663 |
| BseMI | GCAATG | 1 cut(s) | 741 |
| BseMII | CTCAG | 2 cut(s) | 42, 207 |
| BseNI | ACTGG | 2 cut(s) | 232, 697 |
| BseRI | GAGGAG | 1 cut(s) | 611 |
| BseXI | GCAGC | 1 cut(s) | 618 |
| BshFI | GGCC | 3 cut(s) | 42, 755, 811 |
| BsiSI | CCGG | 1 cut(s) | 369 |
| BslFI | GGGAC | 2 cut(s) | 55, 429 |
| BsmAI | GTCTC | 1 cut(s) | 758 |
| BsmFI | GGGAC | 2 cut(s) | 55, 429 |
| BsnI | GGCC | 3 cut(s) | 42, 755, 811 |
| BspACI | CCGC | 4 cut(s) | 116, 683, 752, 855 |
| BspANI | GGCC | 3 cut(s) | 42, 755, 811 |
| BspCNI | CTCAG | 2 cut(s) | 43, 206 |
| BspHI | TCATGA | 3 cut(s) | 526, 775, 787 |
| BspLI | GGNNCC | 1 cut(s) | 445 |
| BspTI | CTTAAG | 1 cut(s) | 13 |
| BsrDI | GCAATG | 1 cut(s) | 741 |
| BsrI | ACTGG | 2 cut(s) | 232, 697 |
| BssECI | CCNNGG | 2 cut(s) | 367, 490 |
| BssT1I | CCWWGG | 1 cut(s) | 490 |
| Bst4CI | ACNGT | 3 cut(s) | 443, 785, 794 |
| BstAFI | CTTAAG | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 1 cut(s) | 44 |
| BstDEI | CTNAG | 4 cut(s) | 51, 193, 335, 627 |
| BstF5I | GGATG | 6 cut(s) | 188, 363, 398, 466, 544, 673 |
| BstMAI | GTCTC | 1 cut(s) | 758 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 52, 260 |
| BstNSI | RCATGY | 2 cut(s) | 205, 479 |
| BstSCI | CCNGG | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 618 |
| BstV2I | GAAGAC | 1 cut(s) | 318 |
| BstX2I | RGATCY | 1 cut(s) | 78 |
| BstYI | RGATCY | 1 cut(s) | 78 |
| BsuI | GTATCC | 1 cut(s) | 132 |
| BsuRI | GGCC | 3 cut(s) | 42, 755, 811 |
| BtsCI | GGATG | 6 cut(s) | 188, 363, 398, 466, 544, 673 |
| BtsIMutI | CAGTG | 1 cut(s) | 578 |
| Cac8I | GCNNGC | 1 cut(s) | 44 |
| CciI | TCATGA | 3 cut(s) | 526, 775, 787 |
| Cfr13I | GGNCC | 2 cut(s) | 443, 716 |
| DdeI | CTNAG | 4 cut(s) | 51, 193, 335, 627 |
| DraIII | CACNNNGTG | 1 cut(s) | 304 |
| EaeI | YGGCCR | 1 cut(s) | 753 |
| Eco130I | CCWWGG | 1 cut(s) | 490 |
| Eco47I | GGWCC | 2 cut(s) | 443, 716 |
| EcoT14I | CCWWGG | 1 cut(s) | 490 |
| EcoT22I | ATGCAT | 2 cut(s) | 439, 481 |
| ErhI | CCWWGG | 1 cut(s) | 490 |
| FaqI | GGGAC | 2 cut(s) | 55, 429 |
| FbaI | TGATCA | 3 cut(s) | 157, 541, 772 |
| Fnu4HI | GCNGC | 4 cut(s) | 117, 607, 683, 753 |
| FokI | GGATG | 6 cut(s) | 195, 350, 385, 453, 531, 660 |
| Fsp4HI | GCNGC | 4 cut(s) | 117, 607, 683, 753 |
| FspBI | CTAG | 2 cut(s) | 210, 564 |
| GluI | GCNGC | 4 cut(s) | 117, 607, 683, 753 |
| HaeIII | GGCC | 3 cut(s) | 42, 755, 811 |
| HapII | CCGG | 1 cut(s) | 369 |
| HincII | GTYRAC | 1 cut(s) | 869 |
| HindII | GTYRAC | 1 cut(s) | 869 |
| HindIII | AAGCTT | 1 cut(s) | 629 |
| HpaII | CCGG | 1 cut(s) | 369 |
| HphI | GGTGA | 3 cut(s) | 316, 377, 845 |
| Hpy166II | GTNNAC | 3 cut(s) | 298, 724, 869 |
| Hpy188I | TCNGA | 1 cut(s) | 817 |
| Hpy188III | TCNNGA | 8 cut(s) | 64, 106, 161, 180, 527, 776, 788, 890 |
| Hpy8I | GTNNAC | 3 cut(s) | 298, 724, 869 |
| Hpy99I | CGWCG | 4 cut(s) | 644, 652, 817, 833 |
| HpyAV | CCTTC | 4 cut(s) | 89, 266, 412, 418 |
| HpyCH4III | ACNGT | 3 cut(s) | 443, 785, 794 |
| HpyCH4IV | ACGT | 1 cut(s) | 828 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 205, 437, 479, 512 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 52, 260 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 193, 335, 627 |
| HpySE526I | ACGT | 1 cut(s) | 828 |
| Ksp22I | TGATCA | 3 cut(s) | 157, 541, 772 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| Lsp1109I | GCAGC | 1 cut(s) | 618 |
| LweI | GCATC | 1 cut(s) | 372 |
| MaeI | CTAG | 2 cut(s) | 210, 564 |
| MaeII | ACGT | 1 cut(s) | 828 |
| MaeIII | GTNAC | 1 cut(s) | 794 |
| MboII | GAAGA | 3 cut(s) | 52, 323, 812 |
| MflI | RGATCY | 1 cut(s) | 78 |
| MluCI | AATT | 3 cut(s) | 23, 227, 844 |
| MmeI | TCCRAC | 2 cut(s) | 545, 795 |
| MnlI | CCTC | 8 cut(s) | 393, 480, 516, 528, 607, 629, 632, 646 |
| Mph1103I | ATGCAT | 2 cut(s) | 439, 481 |
| MseI | TTAA | 1 cut(s) | 14 |
| MslI | CAYNNNNRTG | 2 cut(s) | 432, 734 |
| MspCI | CTTAAG | 1 cut(s) | 13 |
| MspI | CCGG | 1 cut(s) | 369 |
| MspR9I | CCNGG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 52, 260 |
| NciI | CCSGG | 1 cut(s) | 369 |
| NlaIV | GGNNCC | 1 cut(s) | 445 |
| NsiI | ATGCAT | 2 cut(s) | 439, 481 |
| NspI | RCATGY | 2 cut(s) | 205, 479 |
| PagI | TCATGA | 3 cut(s) | 526, 775, 787 |
| PkrI | GCNGC | 4 cut(s) | 118, 608, 684, 754 |
| PspN4I | GGNNCC | 1 cut(s) | 445 |
| PspPI | GGNCC | 2 cut(s) | 443, 716 |
| PsuI | RGATCY | 1 cut(s) | 78 |
| RseI | CAYNNNNRTG | 2 cut(s) | 432, 734 |
| SaqAI | TTAA | 1 cut(s) | 14 |
| SatI | GCNGC | 4 cut(s) | 117, 607, 683, 753 |
| Sau96I | GGNCC | 2 cut(s) | 443, 716 |
| ScrFI | CCNGG | 1 cut(s) | 369 |
| SfaNI | GCATC | 1 cut(s) | 372 |
| SinI | GGWCC | 2 cut(s) | 443, 716 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 432, 734 |
| SmlI | CTYRAG | 2 cut(s) | 13, 316 |
| SmoI | CTYRAG | 2 cut(s) | 13, 316 |
| Sse9I | AATT | 3 cut(s) | 23, 227, 844 |
| SsiI | CCGC | 4 cut(s) | 116, 683, 752, 855 |
| SspMI | CTAG | 2 cut(s) | 210, 564 |
| StyD4I | CCNGG | 1 cut(s) | 367 |
| StyI | CCWWGG | 1 cut(s) | 490 |
| TaaI | ACNGT | 3 cut(s) | 443, 785, 794 |
| TaiI | ACGT | 1 cut(s) | 831 |
| TaqI | TCGA | 1 cut(s) | 357 |
| TasI | AATT | 3 cut(s) | 23, 227, 844 |
| TauI | GCSGC | 3 cut(s) | 119, 685, 755 |
| Tru1I | TTAA | 1 cut(s) | 14 |
| Tru9I | TTAA | 1 cut(s) | 14 |
| TscAI | CASTG | 1 cut(s) | 585 |
| TseI | GCWGC | 1 cut(s) | 606 |
| TspDTI | ATGAA | 2 cut(s) | 523, 718 |
| TspGWI | ACGGA | 1 cut(s) | 628 |
| TspRI | CASTG | 1 cut(s) | 585 |
| Vha464I | CTTAAG | 1 cut(s) | 13 |
| VpaK11BI | GGWCC | 2 cut(s) | 443, 716 |
| XceI | RCATGY | 2 cut(s) | 205, 479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 233 |
| XspI | CTAG | 2 cut(s) | 210, 564 |
| Zsp2I | ATGCAT | 2 cut(s) | 439, 481 |