Rmu_sc0002841.1_g000017
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002841.1
OG0012163
Physical Location & Seq
Forward (+)
95267 .. 97075
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002841.1_g000017.1.cds

Sequence Viewer

Length: 1218 bp
atggaagaacatattaaccctttggcagtgactcatctgcttcaacacacactgagaagcttgtgcagtcaagaaaattcacagtggatttatgctgtcttttggaggatcctcccaagaaactacccaccacccaagtgggaaggtcatggagcttatgacaggtcaagagggaacagaaggaactggatattggtttgggaagatggtttctgcaactttggtgcctcagcctcaccagctcatgatcagatcaactcatcgaatggtgagtgtccaggtggcccttcagtttatggtggtgatcaatttcaacatcaccagtactaccatggtctgcaacctgagcttttcttcaagatgtcccatgagatctacaactatggagaagggttgatagggaaagtggcagcagatcatagtcataagtggatatacaaagaaccaaatgatcagcatcaagaaatcaactttttatcagcctggcacaactcagctgactcgcaccctaggacatgggaagcccagttccagtctggcataaagaccatagctctgatagcagtgagagaaggtgtagttcagttaggagcaattaacaaggtggttgaagatctgagctatgttgttttgctcagaaagaagctgagctacattgagagcatccctggagttcttctgcctcacccatcatctctatcattccctagcttcaagcctgaccctcatggctatggtaatatgggtgcccctccagatcatcatagtcatgcatggcacaatttccaaggcatgggcactaatgctacaaatcttcttgtcccaccacatccaagtactactcatgaccaatattatgagcaccatttcaacatgaaccatcatcaagtgccaatgttgaaaaacataacaccatccatgagtagccttgaagctctcctctccaagcttccctcggtggttccctcaacacctaatactactcatgatcatcaccagtttccagaatcatctcatcatcatcatggaggtggaactatgcaatttatggcgactacggagcagatggtagtggccaaggaggacactgatgttcaagaagaggaggaatacatggcaccggatcacaagaacgtctgtgttaacaccggggagagcagcacttctatgtccgccgcctacggccgtcaacaaccccagcatttccatcaccactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

405

Amino Acids

45.9

Weight (kDa)

6.19

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 224, 746, 1117
AccB7I CCANNNNNTGG 1 cut(s) 793
AciI CCGC 2 cut(s) 1173, 1176
AclWI GGATC 3 cut(s) 103, 116, 1131
AcoI YGGCCR 2 cut(s) 1074, 1183
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 326, 838
AfiI CCNNNNNNNGG 1 cut(s) 793
AgsI TTSAA 9 cut(s) 44, 314, 358, 611, 715, 871, 901, 932, 1097
AjnI CCWGG 3 cut(s) 277, 482, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 136
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
Alw21I GWGCWC 1 cut(s) 864
AlwI GGATC 3 cut(s) 103, 116, 1131
AoxI GGCC 3 cut(s) 283, 1074, 1183
ApeKI GCWGC 2 cut(s) 410, 1158
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 1150
AsuHPI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1202
AvrII CCTAGG 1 cut(s) 509
BaeGI GKGCMC 2 cut(s) 751, 800
BalI TGGCCA 1 cut(s) 1076
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 3 cut(s) 224, 746, 1117
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
Bbv12I GWGCWC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 422, 1170
BccI CCATC 6 cut(s) 200, 697, 888, 922, 1060, 1215
BceAI ACGGC 2 cut(s) 1170, 1198
BciT130I CCWGG 3 cut(s) 279, 484, 669
BclI TGATCA 4 cut(s) 247, 304, 451, 988
BcnI CCSGG 1 cut(s) 1150
BfaI CTAG 2 cut(s) 510, 708
BglII AGATCT 2 cut(s) 372, 613
BisI GCNGC 3 cut(s) 411, 1159, 1176
BlnI CCTAGG 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 3 cut(s) 412, 1160, 1177
BmcAI AGTACT 2 cut(s) 326, 838
Bme1390I CCNGG 4 cut(s) 279, 484, 669, 1150
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 5 cut(s) 110, 226, 748, 963, 1119
BmrFI CCNGG 4 cut(s) 279, 484, 669, 1150
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 466, 672
BmuI ACTGGG 1 cut(s) 520
BpmI CTGGAG 2 cut(s) 690, 738
Bpu10I CCTNAGC 2 cut(s) 229, 345
Bpu1102I GCTNAGC 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 1150
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1077, 1149
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 5 cut(s) 191, 322, 526, 532, 997
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 3 cut(s) 279, 484, 669
BseDI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1077, 1149
BseGI GGATG 3 cut(s) 663, 829, 914
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMII CTCAG 7 cut(s) 44, 243, 336, 507, 608, 638, 649
BseNI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BseRI GAGGAG 2 cut(s) 929, 1118
BseSI GKGCMC 2 cut(s) 751, 800
BseX3I CGGCCG 1 cut(s) 1183
BseXI GCAGC 2 cut(s) 422, 1170
BseYI CCCAGC 1 cut(s) 1197
BsgI GTGCAG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 1186
BshFI GGCC 3 cut(s) 285, 1076, 1185
BshNI GGYRCC 3 cut(s) 224, 746, 1117
BsiEI CGRYCG 1 cut(s) 1186
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 2 cut(s) 1121, 1149
BslFI GGGAC 2 cut(s) 349, 806
BslI CCNNNNNNNGG 1 cut(s) 793
BsmFI GGGAC 2 cut(s) 349, 806
BsnI GGCC 3 cut(s) 285, 1076, 1185
Bsp1286I GDGCHC 3 cut(s) 751, 800, 864
Bsp1720I GCTNAGC 1 cut(s) 647
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 2 cut(s) 1173, 1176
BspANI GGCC 3 cut(s) 285, 1076, 1185
BspCNI CTCAG 7 cut(s) 45, 242, 337, 506, 609, 639, 648
BspHI TCATGA 3 cut(s) 244, 844, 985
BspLI GGNNCC 5 cut(s) 110, 226, 748, 963, 1119
BspPI GGATC 3 cut(s) 103, 116, 1131
BspT107I GGYRCC 3 cut(s) 224, 746, 1117
BsrI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BssECI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1077, 1149
BssT1I CCWWGG 4 cut(s) 331, 509, 787, 1077
Bst2UI CCWGG 3 cut(s) 279, 484, 669
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 1095
BstDEI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 663, 829, 914
BstMCI CGRYCG 1 cut(s) 1186
BstMWI GCNNNNNNNGC 3 cut(s) 239, 346, 560
BstNI CCWGG 3 cut(s) 279, 484, 669
BstSCI CCNGG 4 cut(s) 277, 482, 667, 1148
BstSLI GKGCMC 2 cut(s) 751, 800
BstV1I GCAGC 2 cut(s) 422, 1170
BstX2I RGATCY 3 cut(s) 108, 372, 613
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 3 cut(s) 108, 372, 613
BstZI CGGCCG 1 cut(s) 1183
BsuRI GGCC 3 cut(s) 285, 1076, 1185
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 663, 829, 914
BtsI GCAGTG 2 cut(s) 33, 570
BtsIMutI CAGTG 6 cut(s) 33, 50, 89, 570, 1086, 1213
CciI TCATGA 3 cut(s) 244, 844, 985
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 325, 837
CviQI GTAC 2 cut(s) 325, 837
DdeI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
EaeI YGGCCR 2 cut(s) 1074, 1183
EagI CGGCCG 1 cut(s) 1183
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
EciI GGCGGA 1 cut(s) 1162
EclXI CGGCCG 1 cut(s) 1183
Eco130I CCWWGG 4 cut(s) 331, 509, 787, 1077
Eco52I CGGCCG 1 cut(s) 1183
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 3 cut(s) 277, 482, 667
EcoT14I CCWWGG 4 cut(s) 331, 509, 787, 1077
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 4 cut(s) 331, 509, 787, 1077
FaqI GGGAC 2 cut(s) 349, 806
FbaI TGATCA 4 cut(s) 247, 304, 451, 988
Fnu4HI GCNGC 3 cut(s) 411, 1159, 1176
FokI GGATG 3 cut(s) 650, 816, 901
Fsp4HI GCNGC 3 cut(s) 411, 1159, 1176
FspBI CTAG 2 cut(s) 510, 708
GluI GCNGC 3 cut(s) 411, 1159, 1176
GsaI CCCAGC 1 cut(s) 1201
GsuI CTGGAG 2 cut(s) 690, 738
HaeIII GGCC 3 cut(s) 285, 1076, 1185
HapII CCGG 2 cut(s) 1121, 1149
HincII GTYRAC 2 cut(s) 1144, 1190
HindII GTYRAC 2 cut(s) 1144, 1190
HindIII AAGCTT 2 cut(s) 58, 947
HinfI GANTC 3 cut(s) 31, 500, 1007
HpaI GTTAAC 1 cut(s) 1144
HpaII CCGG 2 cut(s) 1121, 1149
HphI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1202
Hpy166II GTNNAC 2 cut(s) 1144, 1190
Hpy188I TCNGA 4 cut(s) 252, 558, 618, 638
Hpy8I GTNNAC 2 cut(s) 1144, 1190
HpyAV CCTTC 5 cut(s) 137, 174, 297, 383, 566
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 5 cut(s) 66, 216, 340, 773, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 346, 560
HpyF3I CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
HpySE526I ACGT 1 cut(s) 1134
Ksp22I TGATCA 4 cut(s) 247, 304, 451, 988
KspAI GTTAAC 1 cut(s) 1144
LmnI GCTCC 3 cut(s) 152, 590, 1060
Lsp1109I GCAGC 2 cut(s) 422, 1170
LweI GCATC 2 cut(s) 466, 672
MaeI CTAG 2 cut(s) 510, 708
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 7 cut(s) 17, 215, 346, 623, 668, 806, 1112
MflI RGATCY 3 cut(s) 108, 372, 613
MhlI GDGCHC 3 cut(s) 751, 800, 864
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 5 cut(s) 76, 308, 594, 781, 1043
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 2 cut(s) 25, 494
Mox20I TGGCCA 1 cut(s) 1076
Mph1103I ATGCAT 1 cut(s) 775
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 3 cut(s) 15, 597, 1143
MslI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1023, 1029, 1166
Msp20I TGGCCA 1 cut(s) 1076
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 1121, 1149
MspR9I CCNGG 4 cut(s) 279, 484, 669, 1150
MvaI CCWGG 3 cut(s) 279, 484, 669
MwoI GCNNNNNNNGC 3 cut(s) 239, 346, 560
NciI CCSGG 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 331
NlaIV GGNNCC 5 cut(s) 110, 226, 748, 963, 1119
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 136
PagI TCATGA 3 cut(s) 244, 844, 985
PfeI GAWTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 3 cut(s) 412, 1160, 1177
PleI GAGTC 2 cut(s) 25, 494
PpsI GAGTC 2 cut(s) 25, 494
Psp6I CCWGG 3 cut(s) 277, 482, 667
PspFI CCCAGC 1 cut(s) 1197
PspGI CCWGG 3 cut(s) 277, 482, 667
PspN4I GGNNCC 5 cut(s) 110, 226, 748, 963, 1119
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 3 cut(s) 108, 372, 613
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 326, 838
RsaNI GTAC 2 cut(s) 325, 837
RseI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1023, 1029, 1166
SaqAI TTAA 3 cut(s) 15, 597, 1143
SatI GCNGC 3 cut(s) 411, 1159, 1176
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 2 cut(s) 326, 838
SchI GAGTC 2 cut(s) 25, 494
ScrFI CCNGG 4 cut(s) 279, 484, 669, 1150
SduI GDGCHC 3 cut(s) 751, 800, 864
SfaNI GCATC 2 cut(s) 466, 672
SmiMI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1023, 1029, 1166
Sse9I AATT 5 cut(s) 76, 308, 594, 781, 1043
SsiI CCGC 2 cut(s) 1173, 1176
SspI AATATT 1 cut(s) 854
SspMI CTAG 2 cut(s) 510, 708
StyD4I CCNGG 4 cut(s) 277, 482, 667, 1148
StyI CCWWGG 4 cut(s) 331, 509, 787, 1077
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 1 cut(s) 263
TasI AATT 5 cut(s) 76, 308, 594, 781, 1043
TatI WGTACW 2 cut(s) 324, 836
TauI GCSGC 1 cut(s) 1178
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 15, 597, 1143
Tru9I TTAA 3 cut(s) 15, 597, 1143
TscAI CASTG 5 cut(s) 33, 57, 89, 570, 1093
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 410, 1158
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 890
TspGWI ACGGA 1 cut(s) 1073
TspRI CASTG 5 cut(s) 33, 57, 89, 570, 1093
Van91I CCANNNNNTGG 1 cut(s) 793
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 3 cut(s) 135, 329, 533
XmaJI CCTAGG 1 cut(s) 509
XspI CTAG 2 cut(s) 510, 708
ZrmI AGTACT 2 cut(s) 326, 838
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.