Rh4DG418400
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012163
Physical Location & Seq
Reverse (-)
62710096 .. 62712653
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG418400.1

Sequence Viewer

Length: 1227 bp
ATGGAAGAACATATTAACCCTTTGGCAGTGACTCATCTGCTTCAACACACACTGAGAAGCTTGTGCAGTCAAGAAAATTCACAGTGGATTTATGCTGTCTTTTGGAGGATCCTCCCAAGAAACTACCCACCACCCAAGTGGGAAGGTCATGGAGCTTATGACAGGTCAAGAGGGAACAGAAGGAACTGGATATTGGTTTGGGAAGATGGTTTCTGCAACTTTGGTGCCTCAGCCTCACCAGCTCATGATCAGATCAACTCATCCAATGGTGAGTGTCCAGGTGGCCCTTCAGTTTATGGCGGTGATCAATTTCAACATCACCAGTACTACCATGGTCTGCAACCTGAGCTTTTCTTCAAGATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATAGGGAAAGTGGCAGCAGATCATAGTCATAAGTGGATATACAAAGAACCAAATGATCAGCATCAAGAAATCAACTTTTTATCAGCATGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCTCTGATAGCAGTGAGAGAAGGTGTAGTTCAGTTAGGAGCAATTAACAAGGTGGTTGAAGATCTGAGCTATGTTGTTTTGCTCAGAAAGAAGCTGAGCTACATTGAGAGCATCCCTGGAGTTCTTCTGCCTCACCCATCATCTCTATCATTCCCCAGCTTCAAGCCTGACCCTCATGGCTATGGTAATATGGGTGCCCCTCCAGATCATCATAGTCATGCATGGCACAATTTCCAAGGCATGGGCACTAATGCTACAAATCTTCTTGTCCCACCACATCCAAGTACTACTCATGACCAATATTATGAGCACCATTTCAACATGAACCATCATCAAGTGCCAATGTTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCGGTGGTGCCCTCAACACCTAATACTACTCATGATCATCACCAGTTTCCAGAATCATCTCATCATCATCATCATCATCATGGAGGTGGAACTATGCAATTTATGGCGACTACGGAGCAGATGGTAGTGGCCAAGGAGGAGACTGATGTTCAAGAAGAGGAGGAATACATGGCACCGGATCACAAGAACGTTTGTGTTAACGCCGGGGAGAGCAGCACTTCTATGTCCGCCGCCTACGGCAGTCAACAACCCCAGCATTTCCATCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

408

Amino Acids

46.22

Weight (kDa)

6.19

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 14 - 213 6.3e-33 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 224, 746, 961, 1126
AccB7I CCANNNNNTGG 1 cut(s) 793
AciI CCGC 3 cut(s) 300, 1182, 1185
AclI AACGTT 1 cut(s) 1143
AclWI GGATC 3 cut(s) 103, 116, 1140
AcoI YGGCCR 1 cut(s) 1083
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 326, 838
AfiI CCNNNNNNNGG 1 cut(s) 793
AgsI TTSAA 9 cut(s) 44, 314, 358, 611, 715, 871, 901, 932, 1106
AjnI CCWGG 2 cut(s) 277, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 136
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 3 cut(s) 103, 116, 1140
AoxI GGCC 2 cut(s) 283, 1083
ApeKI GCWGC 2 cut(s) 410, 1167
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 1159
AsuHPI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1211
AvrII CCTAGG 1 cut(s) 509
BaeGI GKGCMC 3 cut(s) 751, 800, 966
BalI TGGCCA 1 cut(s) 1085
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 4 cut(s) 224, 746, 961, 1126
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
Bbv12I GWGCWC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 422, 1179
BccI CCATC 5 cut(s) 200, 697, 888, 1069, 1224
BceAI ACGGC 1 cut(s) 1207
BciT130I CCWGG 2 cut(s) 279, 669
BclI TGATCA 4 cut(s) 247, 304, 451, 988
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 1 cut(s) 1088
BfaI CTAG 1 cut(s) 510
BglII AGATCT 2 cut(s) 372, 613
BisI GCNGC 3 cut(s) 411, 1168, 1185
BlnI CCTAGG 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 3 cut(s) 412, 1169, 1186
BmcAI AGTACT 2 cut(s) 326, 838
Bme1390I CCNGG 3 cut(s) 279, 669, 1159
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
BmrFI CCNGG 3 cut(s) 279, 669, 1159
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 466, 672
BmuI ACTGGG 1 cut(s) 520
BpmI CTGGAG 2 cut(s) 690, 738
Bpu10I CCTNAGC 2 cut(s) 229, 345
Bpu1102I GCTNAGC 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 1159
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BsaWI WCCGGW 1 cut(s) 1129
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 5 cut(s) 191, 322, 526, 532, 997
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 279, 669
BseDI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BseGI GGATG 3 cut(s) 260, 663, 829
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMII CTCAG 7 cut(s) 44, 243, 336, 507, 608, 638, 649
BseNI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BseRI GAGGAG 3 cut(s) 929, 1106, 1127
BseSI GKGCMC 3 cut(s) 751, 800, 966
BseXI GCAGC 2 cut(s) 422, 1179
BseYI CCCAGC 2 cut(s) 707, 1206
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 285, 1085
BshNI GGYRCC 4 cut(s) 224, 746, 961, 1126
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 2 cut(s) 1130, 1158
BslFI GGGAC 2 cut(s) 349, 806
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 1 cut(s) 1088
BsmFI GGGAC 2 cut(s) 349, 806
BsnI GGCC 2 cut(s) 285, 1085
Bsp1286I GDGCHC 4 cut(s) 751, 800, 864, 966
Bsp1720I GCTNAGC 1 cut(s) 647
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 3 cut(s) 300, 1182, 1185
BspANI GGCC 2 cut(s) 285, 1085
BspCNI CTCAG 7 cut(s) 45, 242, 337, 506, 609, 639, 648
BspHI TCATGA 3 cut(s) 244, 844, 985
BspLI GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
BspPI GGATC 3 cut(s) 103, 116, 1140
BspT107I GGYRCC 4 cut(s) 224, 746, 961, 1126
BsrI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BssECI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BssT1I CCWWGG 4 cut(s) 331, 509, 787, 1086
Bst2UI CCWGG 2 cut(s) 279, 669
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 1104
BstDEI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 260, 663, 829
BstMAI GTCTC 1 cut(s) 1088
BstMWI GCNNNNNNNGC 3 cut(s) 239, 346, 560
BstNI CCWGG 2 cut(s) 279, 669
BstSCI CCNGG 3 cut(s) 277, 667, 1157
BstSLI GKGCMC 3 cut(s) 751, 800, 966
BstV1I GCAGC 2 cut(s) 422, 1179
BstX2I RGATCY 3 cut(s) 108, 372, 613
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 3 cut(s) 108, 372, 613
BsuRI GGCC 2 cut(s) 285, 1085
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 260, 663, 829
BtsI GCAGTG 2 cut(s) 33, 570
BtsIMutI CAGTG 5 cut(s) 33, 50, 89, 570, 1222
CciI TCATGA 3 cut(s) 244, 844, 985
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 325, 837
CviQI GTAC 2 cut(s) 325, 837
DdeI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
EaeI YGGCCR 1 cut(s) 1083
Eam1104I CTCTTC 1 cut(s) 1104
EarI CTCTTC 1 cut(s) 1104
EciI GGCGGA 1 cut(s) 1171
Eco130I CCWWGG 4 cut(s) 331, 509, 787, 1086
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 277, 667
EcoT14I CCWWGG 4 cut(s) 331, 509, 787, 1086
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 4 cut(s) 331, 509, 787, 1086
FaqI GGGAC 2 cut(s) 349, 806
FbaI TGATCA 4 cut(s) 247, 304, 451, 988
Fnu4HI GCNGC 3 cut(s) 411, 1168, 1185
FokI GGATG 3 cut(s) 247, 650, 816
Fsp4HI GCNGC 3 cut(s) 411, 1168, 1185
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 411, 1168, 1185
GsaI CCCAGC 2 cut(s) 711, 1210
GsuI CTGGAG 2 cut(s) 690, 738
HaeIII GGCC 2 cut(s) 285, 1085
HapII CCGG 2 cut(s) 1130, 1158
HincII GTYRAC 2 cut(s) 1153, 1199
HindII GTYRAC 2 cut(s) 1153, 1199
HindIII AAGCTT 2 cut(s) 58, 947
HinfI GANTC 3 cut(s) 31, 500, 1007
HpaI GTTAAC 1 cut(s) 1153
HpaII CCGG 2 cut(s) 1130, 1158
HphI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1211
Hpy166II GTNNAC 2 cut(s) 1153, 1199
Hpy188I TCNGA 4 cut(s) 252, 558, 618, 638
Hpy8I GTNNAC 2 cut(s) 1153, 1199
HpyAV CCTTC 5 cut(s) 137, 174, 297, 383, 566
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 5 cut(s) 66, 216, 340, 773, 1051
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 346, 560
HpyF3I CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
HpySE526I ACGT 1 cut(s) 1143
Ksp22I TGATCA 4 cut(s) 247, 304, 451, 988
KspAI GTTAAC 1 cut(s) 1153
LmnI GCTCC 3 cut(s) 152, 590, 1069
Lsp1109I GCAGC 2 cut(s) 422, 1179
LweI GCATC 2 cut(s) 466, 672
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 7 cut(s) 17, 215, 346, 623, 668, 806, 1121
MflI RGATCY 3 cut(s) 108, 372, 613
MhlI GDGCHC 4 cut(s) 751, 800, 864, 966
MlsI TGGCCA 1 cut(s) 1085
MluCI AATT 5 cut(s) 76, 308, 594, 781, 1052
MluNI TGGCCA 1 cut(s) 1085
MlyI GAGTC 2 cut(s) 25, 494
Mox20I TGGCCA 1 cut(s) 1085
Mph1103I ATGCAT 1 cut(s) 775
MscI TGGCCA 1 cut(s) 1085
MseI TTAA 3 cut(s) 15, 597, 1152
MslI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
Msp20I TGGCCA 1 cut(s) 1085
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 1130, 1158
MspR9I CCNGG 3 cut(s) 279, 669, 1159
MvaI CCWGG 2 cut(s) 279, 669
MwoI GCNNNNNNNGC 3 cut(s) 239, 346, 560
NciI CCSGG 1 cut(s) 1159
NcoI CCATGG 1 cut(s) 331
NlaIV GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 136
PagI TCATGA 3 cut(s) 244, 844, 985
PfeI GAWTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 3 cut(s) 412, 1169, 1186
PleI GAGTC 2 cut(s) 25, 494
PpsI GAGTC 2 cut(s) 25, 494
Psp1406I AACGTT 1 cut(s) 1143
Psp6I CCWGG 2 cut(s) 277, 667
PspFI CCCAGC 2 cut(s) 707, 1206
PspGI CCWGG 2 cut(s) 277, 667
PspN4I GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 3 cut(s) 108, 372, 613
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 326, 838
RsaNI GTAC 2 cut(s) 325, 837
RseI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
SaqAI TTAA 3 cut(s) 15, 597, 1152
SatI GCNGC 3 cut(s) 411, 1168, 1185
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 2 cut(s) 326, 838
SchI GAGTC 2 cut(s) 25, 494
ScrFI CCNGG 3 cut(s) 279, 669, 1159
SduI GDGCHC 4 cut(s) 751, 800, 864, 966
SfaNI GCATC 2 cut(s) 466, 672
SmiMI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
Sse9I AATT 5 cut(s) 76, 308, 594, 781, 1052
SsiI CCGC 3 cut(s) 300, 1182, 1185
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 277, 667, 1157
StyI CCWWGG 4 cut(s) 331, 509, 787, 1086
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 1146
TasI AATT 5 cut(s) 76, 308, 594, 781, 1052
TatI WGTACW 2 cut(s) 324, 836
TauI GCSGC 1 cut(s) 1187
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 15, 597, 1152
Tru9I TTAA 3 cut(s) 15, 597, 1152
TscAI CASTG 4 cut(s) 33, 57, 89, 570
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 410, 1167
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 890
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 4 cut(s) 33, 57, 89, 570
Van91I CCANNNNNTGG 1 cut(s) 793
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 3 cut(s) 135, 329, 533
XmaJI CCTAGG 1 cut(s) 509
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 2 cut(s) 326, 838
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.