pycom16g07620
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012163
Physical Location & Seq
Forward (+)
4993921 .. 4994611
691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07620.2

Sequence Viewer

Length: 642 bp
ATGACGGCAAAATATACTAATGAATATTTGTCTTTTGATTCGAAACGACATCGGACAAACTTTAACTATGTGATTGAAGACTTGAGCTATGTAGTTCTACTAAGAAAGAAGTTCGGCTACATCGAAAGCATCCCCGGAGTGCTTCTCCCACACCCATCATCTCCACCCTTCCCCTTCAAGCCTGATCCTCATCATCATCATGGCTATACATATGGTCTCACCCCAGATCACCATCATCATGCATGGCATCTTCAAGCAGGGATAAACCCTCTTGCACCACCTCCAACTCATGACTTCATGTATGATCATCACCAATATCTCAACCCTAATCAAGTGGTTCCATTGAAAAACATAACCCCCTCCATGAGCAGCCTTGAAGCCCTCCTCTCTAAGCTTCCATCGGTCGTGCCGACGAATCACGATCATAATCCTCAGCCGCATGATCAATCCCAGTTTTTATTATCTCATGGTCATGGACATGTGGATTTTATGGCAATGACAGACCAGAAAGTGGCCAAGGAGGAGACTAGTGACAATGATGATCATGATCGTAACGAAGAATATAGGCCGTCCGATGATCAAAACAACGTCGGTGAAACCAGCACTTCTATGTCTGCTTATGCCCATCAACATTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

214

Amino Acids

24.5

Weight (kDa)

6.04

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AciI CCGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 5 cut(s) 77, 178, 254, 346, 377
AhlI ACTAGT 1 cut(s) 527
AluBI AGCT 2 cut(s) 87, 394
AluI AGCT 2 cut(s) 87, 394
Alw26I GTCTC 2 cut(s) 221, 518
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 513, 566
ApeKI GCWGC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 211, 221, 302, 605
AsuII TTCGAA 1 cut(s) 41
BalI TGGCCA 1 cut(s) 515
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 381
BccI CCATC 4 cut(s) 163, 240, 406, 633
BceAI ACGGC 2 cut(s) 21, 553
BclI TGATCA 4 cut(s) 304, 442, 541, 577
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 221, 518
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 370, 437
BlsI GCNGC 2 cut(s) 371, 438
Bme1390I CCNGG 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 2 cut(s) 138, 256
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 135
BsaBI GATNNNNATC 4 cut(s) 189, 231, 426, 546
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 133, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 4 cut(s) 189, 231, 426, 546
BseDI CCNNGG 2 cut(s) 133, 516
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 4 cut(s) 189, 231, 426, 546
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 374, 536
BseXI GCAGC 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 515, 568
BsiEI CGRYCG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 221, 518
BsnI GGCC 2 cut(s) 515, 568
Bso31I GGTCTC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
BspACI CCGC 1 cut(s) 437
BspANI GGCC 2 cut(s) 515, 568
BspCNI CTCAG 1 cut(s) 445
BspHI TCATGA 2 cut(s) 289, 544
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 133, 516
BssMI GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
BssT1I CCWWGG 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 101, 390, 432
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 8 cut(s) 187, 229, 307, 424, 445, 544, 550, 580
BstMAI GTCTC 2 cut(s) 221, 518
BstMBI GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
BstMCI CGRYCG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 515, 568
BtsCI GGATG 1 cut(s) 129
CciI TCATGA 2 cut(s) 289, 544
DdeI CTNAG 3 cut(s) 101, 390, 432
DpnI GATC 8 cut(s) 186, 228, 306, 423, 444, 543, 549, 579
DpnII GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
EaeI YGGCCR 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 516
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 516
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 4 cut(s) 304, 442, 541, 577
Fnu4HI GCNGC 2 cut(s) 370, 437
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 370, 437
FspBI CTAG 1 cut(s) 528
GluI GCNGC 2 cut(s) 370, 437
HaeIII GGCC 2 cut(s) 515, 568
HapII CCGG 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 38, 415
HpaII CCGG 1 cut(s) 135
HphI GGTGA 4 cut(s) 211, 221, 302, 605
Hpy188I TCNGA 2 cut(s) 54, 574
Hpy188III TCNNGA 3 cut(s) 290, 419, 545
Hpy99I CGWCG 2 cut(s) 415, 593
HpyAV CCTTC 2 cut(s) 178, 184
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 2 cut(s) 242, 275
HpyF3I CTNAG 3 cut(s) 101, 390, 432
HpySE526I ACGT 1 cut(s) 588
Ksp22I TGATCA 4 cut(s) 304, 442, 541, 577
Kzo9I GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
LpnPI CCDG 7 cut(s) 148, 195, 237, 243, 464, 518, 613
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 2 cut(s) 138, 256
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 530, 551
MalI GATC 8 cut(s) 186, 228, 306, 423, 444, 543, 549, 579
MboI GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
MboII GAAGA 3 cut(s) 89, 242, 569
MlsI TGGCCA 1 cut(s) 515
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 8 cut(s) 198, 279, 291, 370, 392, 395, 441, 514
Mox20I TGGCCA 1 cut(s) 515
Mph1103I ATGCAT 1 cut(s) 244
MscI TGGCCA 1 cut(s) 515
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 5 cut(s) 198, 237, 471, 477, 608
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 135
NciI CCSGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 211
NdeII GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 530
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 41
PagI TCATGA 2 cut(s) 289, 544
PciI ACATGT 1 cut(s) 478
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 407
PfeI GAWTC 2 cut(s) 38, 415
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 2 cut(s) 371, 438
PscI ACATGT 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 339
RseI CAYNNNNRTG 5 cut(s) 198, 237, 471, 477, 608
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 370, 437
Sau3AI GATC 8 cut(s) 184, 226, 304, 421, 442, 541, 547, 577
ScrFI CCNGG 1 cut(s) 135
SetI ASST 4 cut(s) 89, 283, 396, 591
SfaNI GCATC 2 cut(s) 138, 256
SfuI TTCGAA 1 cut(s) 41
SmiMI CAYNNNNRTG 5 cut(s) 198, 237, 471, 477, 608
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 527
SsiI CCGC 1 cut(s) 437
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 516
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 41, 123
TaqII GACCGA 1 cut(s) 391
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 2 cut(s) 38, 415
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 36, 286
Van91I CCANNNNNTGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 482
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.