Rroxscaffold_5G00384820
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012163
Physical Location & Seq
Reverse (-)
64041204 .. 64043445
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384820.1

Sequence Viewer

Length: 864 bp
ATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATAGGGAAAGTGGCAGCAGATCATAGTCATAAGTGGATATACAAAGAACCAAATGATCAGCATCAAGAAATCAACTTTTTATCAGCATGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCTCTGATAGCAGTGAGAGAAGGTGTAGTTCAGTTAGGAGCAATTAACAAGGTGGTTGAAGATCTGAGCTATGTTGTTTTGCTCAGAAAGAAGCTGAGTTACATTGAGAGCATCCCTGGAGTTCTTCTGCCTCACCCATCATCTCTATCATTCCCCAGCTTCAAGCTTGACCCTCATGGCTATGGTAATATGGGTGCCCCTCCAGATCATCATAGTCATGCATGGCACAATTTCCAAGGCACGGGCACTAATATTGCTACAAATCTTCTTGTCCCACCACATCCAAGTACTGCTCATGACCAATATTATGAGCACCATTTCAACATGAACCATCATCAAGTGCCAATGTTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCGGTGGTGCCCTCACCACCTAATACTACTCATGATCATCACCAGTTTCCAGAATCGTCTCATCATCATCATCATGGAGGCGGAACTATGCAATTTATGGCGACTACGGAGCAGATGGTAGTGGCCAAGGAGGAGACTGATGTTCGAGAAGAGGAGGAATACATGGCACCGGATCACAAGAACGTTTGTGTTAACGCCGGGGAGAGCAGCACTTCTATGTCCGCCGCCTACGGCCGTCAACAACCCCAGCATTTCCATCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

287

Amino Acids

32.23

Weight (kDa)

6.2

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 3 - 93 3.2e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 386, 604, 763
AciI CCGC 3 cut(s) 678, 819, 822
AclI AACGTT 1 cut(s) 780
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 2 cut(s) 720, 829
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 5 cut(s) 251, 355, 514, 544, 575
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 8 cut(s) 137, 194, 261, 286, 351, 358, 578, 592
AluI AGCT 8 cut(s) 137, 194, 261, 286, 351, 358, 578, 592
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 660, 725
AlwI GGATC 1 cut(s) 777
AoxI GGCC 2 cut(s) 720, 829
ApeKI GCWGC 2 cut(s) 50, 804
AspA2I CCTAGG 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 4 cut(s) 317, 603, 629, 848
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 3 cut(s) 391, 440, 609
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 3 cut(s) 386, 604, 763
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 62, 816
BccI CCATC 4 cut(s) 337, 531, 706, 861
BceAI ACGGC 2 cut(s) 816, 844
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 2 cut(s) 91, 631
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 660, 725
BfaI CTAG 1 cut(s) 150
BglII AGATCT 2 cut(s) 12, 253
BisI GCNGC 3 cut(s) 51, 805, 822
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 3 cut(s) 52, 806, 823
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 309, 796
BmiI GGNNCC 3 cut(s) 388, 606, 765
BmrFI CCNGG 2 cut(s) 309, 796
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 106, 312
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 330, 378
BpuMI CCSGG 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 6 cut(s) 149, 307, 427, 597, 723, 795
BsaWI WCCGGW 1 cut(s) 766
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 3 cut(s) 166, 172, 640
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 6 cut(s) 149, 307, 427, 597, 723, 795
BseGI GGATG 2 cut(s) 303, 472
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 4 cut(s) 147, 248, 278, 289
BseNI ACTGG 3 cut(s) 166, 172, 640
BseRI GAGGAG 3 cut(s) 572, 743, 764
BseSI GKGCMC 3 cut(s) 391, 440, 609
BseX3I CGGCCG 1 cut(s) 829
BseXI GCAGC 2 cut(s) 62, 816
BseYI CCCAGC 2 cut(s) 347, 843
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 2 cut(s) 722, 831
BshNI GGYRCC 3 cut(s) 386, 604, 763
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 767, 795
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 660, 725
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 722, 831
Bsp1286I GDGCHC 4 cut(s) 391, 440, 507, 609
Bsp143I GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
BspACI CCGC 3 cut(s) 678, 819, 822
BspANI GGCC 2 cut(s) 722, 831
BspCNI CTCAG 4 cut(s) 146, 249, 279, 288
BspHI TCATGA 2 cut(s) 487, 628
BspLI GGNNCC 3 cut(s) 388, 606, 765
BspPI GGATC 1 cut(s) 777
BspT107I GGYRCC 3 cut(s) 386, 604, 763
BsrI ACTGG 3 cut(s) 166, 172, 640
BssECI CCNNGG 6 cut(s) 149, 307, 427, 597, 723, 795
BssMI GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
BssT1I CCWWGG 3 cut(s) 149, 427, 723
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 741
BstDEI CTNAG 4 cut(s) 133, 257, 275, 287
BstF5I GGATG 2 cut(s) 303, 472
BstKTI GATC 7 cut(s) 15, 58, 94, 256, 400, 634, 772
BstMAI GTCTC 2 cut(s) 660, 725
BstMBI GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 307, 794
BstSLI GKGCMC 3 cut(s) 391, 440, 609
BstV1I GCAGC 2 cut(s) 62, 816
BstX2I RGATCY 2 cut(s) 12, 253
BstYI RGATCY 2 cut(s) 12, 253
BstZI CGGCCG 1 cut(s) 829
BsuRI GGCC 2 cut(s) 722, 831
BtsCI GGATG 2 cut(s) 303, 472
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 859
CciI TCATGA 2 cut(s) 487, 628
Csp6I GTAC 1 cut(s) 480
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 4 cut(s) 133, 257, 275, 287
DpnI GATC 7 cut(s) 14, 57, 93, 255, 399, 633, 771
DpnII GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
EaeI YGGCCR 2 cut(s) 720, 829
EagI CGGCCG 1 cut(s) 829
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 2 cut(s) 693, 808
EclXI CGGCCG 1 cut(s) 829
Eco130I CCWWGG 3 cut(s) 149, 427, 723
Eco52I CGGCCG 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 3 cut(s) 149, 427, 723
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 3 cut(s) 149, 427, 723
Esp3I CGTCTC 1 cut(s) 660
FaqI GGGAC 1 cut(s) 449
FbaI TGATCA 2 cut(s) 91, 631
Fnu4HI GCNGC 3 cut(s) 51, 805, 822
FokI GGATG 2 cut(s) 290, 459
Fsp4HI GCNGC 3 cut(s) 51, 805, 822
FspBI CTAG 1 cut(s) 150
GluI GCNGC 3 cut(s) 51, 805, 822
GsaI CCCAGC 2 cut(s) 351, 847
GsuI CTGGAG 2 cut(s) 330, 378
HaeIII GGCC 2 cut(s) 722, 831
HapII CCGG 2 cut(s) 767, 795
HincII GTYRAC 2 cut(s) 790, 836
HindII GTYRAC 2 cut(s) 790, 836
HindIII AAGCTT 2 cut(s) 356, 590
HinfI GANTC 2 cut(s) 140, 650
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 2 cut(s) 767, 795
HphI GGTGA 4 cut(s) 317, 603, 629, 848
Hpy166II GTNNAC 2 cut(s) 790, 836
Hpy188I TCNGA 3 cut(s) 198, 258, 278
Hpy188III TCNNGA 6 cut(s) 101, 395, 488, 629, 647, 743
Hpy8I GTNNAC 2 cut(s) 790, 836
HpyAV CCTTC 2 cut(s) 23, 206
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 2 cut(s) 413, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 4 cut(s) 133, 257, 275, 287
HpySE526I ACGT 1 cut(s) 780
Ksp22I TGATCA 2 cut(s) 91, 631
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
LmnI GCTCC 2 cut(s) 230, 706
Lsp1109I GCAGC 2 cut(s) 62, 816
LweI GCATC 2 cut(s) 106, 312
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 290
MalI GATC 7 cut(s) 14, 57, 93, 255, 399, 633, 771
MboI GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
MboII GAAGA 4 cut(s) 263, 308, 449, 758
MflI RGATCY 2 cut(s) 12, 253
MhlI GDGCHC 4 cut(s) 391, 440, 507, 609
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 3 cut(s) 234, 421, 689
MluNI TGGCCA 1 cut(s) 722
MlyI GAGTC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 722
Mph1103I ATGCAT 1 cut(s) 415
MscI TGGCCA 1 cut(s) 722
MseI TTAA 2 cut(s) 237, 789
MslI CAYNNNNRTG 4 cut(s) 372, 408, 669, 812
Msp20I TGGCCA 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 767, 795
MspR9I CCNGG 2 cut(s) 309, 796
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 796
NdeII GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
NlaIV GGNNCC 3 cut(s) 388, 606, 765
NsiI ATGCAT 1 cut(s) 415
PagI TCATGA 2 cut(s) 487, 628
PfeI GAWTC 1 cut(s) 650
PkrI GCNGC 3 cut(s) 52, 806, 823
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 347, 843
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 388, 606, 765
PsuI RGATCY 2 cut(s) 12, 253
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 4 cut(s) 372, 408, 669, 812
SaqAI TTAA 2 cut(s) 237, 789
SatI GCNGC 3 cut(s) 51, 805, 822
Sau3AI GATC 7 cut(s) 12, 55, 91, 253, 397, 631, 769
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 309, 796
SduI GDGCHC 4 cut(s) 391, 440, 507, 609
SfaNI GCATC 2 cut(s) 106, 312
SmiMI CAYNNNNRTG 4 cut(s) 372, 408, 669, 812
Sse9I AATT 3 cut(s) 234, 421, 689
SsiI CCGC 3 cut(s) 678, 819, 822
SspI AATATT 2 cut(s) 445, 497
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 307, 794
StyI CCWWGG 3 cut(s) 149, 427, 723
TaiI ACGT 1 cut(s) 783
TaqI TCGA 1 cut(s) 742
TasI AATT 3 cut(s) 234, 421, 689
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 2 cut(s) 237, 789
Tru9I TTAA 2 cut(s) 237, 789
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 50, 804
TspDTI ATGAA 1 cut(s) 533
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.