Prupe.1G256900_v2.0.a1
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012163
Physical Location & Seq
Reverse (-)
26698750 .. 26700940
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G256900.1

Sequence Viewer

Length: 1110 bp
ATGGAAGAACATCTGAACCCCTTAGCTGTGACTCATCTGCTTCAACACACCCTGAGAAGCTTGTGCATTCATGAAAACTCTCAGTGGATTTATGCCGTCTTCTGGAGGATCCTGCCTAGAAACTACCCACCACCCAAATGGGAAGGTCATGGAGCTTATGACAGGTCAAGAGGGAACAGAAGGAACTGGATATTGGTTTGGGAAGATGGTTTCTGCAACTTTGGTGCCTCCTCAACAGCTCATGAGATCAACTCCAGTTCTGATTGTCCTGCAGGCCCTTCATCATCAATGTATGGCAACTGTGAATTTCAACAATACAATGGCCTGCAACCAGAGCTTTTCTTCAAGATGTCCCATGAAATCTACAACTACGGAGAAGGGTTGATAGGGAAAGTGGCTGCAGATCATAGTCATAAGTGGATACACAAAGAACCAAATGATCAAGAAATCAACTTCTTATCAGCCTGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCCCTTATAGCAGTTAGAGAAGGTGTTGTTCAGTTAGGAGCTACTCACAAGGTGGTTGAAGATTTGAGCTATGTAGTTCTGCTAAGAAAGAAGTTCAGCTACATTGAAAGCATCCCAGGGGTGCTTCTGCCACACCCATCATCTCCACCCTTCCCCTACAAGGTTGATCATCATCATCATCATGGCTATGCATATGGTCCCACCCCAGATCATCATCATGCATGGCATTTCCAAGCGGGCACTCCAACTCATGAATTCATGTATGATCACCACCACCAATATCTCAACAACCAAGCAGTTCCATTGAAAAACATAACACCCTCCATGAGCAGCCTTGAAGCCCTCCTCTCAAAGCTTCCTTCAGTGGTGCCCTCTGCACCTGCAAATCATGATCAGCTGCAGCAGCCGCAAGAACATGATCTTCAAGGGTCCCAGTTTATGTTATCCCATGGACCGCTCGATTTCATGGCGATCACGGAGCAGAAGTTGGTGGCCAAGGGGGAGACTGATGATCAAGGATTGGTTTCTAACATTGCTAGCAACCTCTCTCCCTCTTTCTCTCGTATTACACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

370

Amino Acids

41.81

Weight (kDa)

6.23

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 922
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 224, 901
AccBSI CCGCTC 1 cut(s) 991
AciI CCGC 3 cut(s) 770, 941, 989
AclWI GGATC 2 cut(s) 103, 116
AcoI YGGCCR 1 cut(s) 1026
AcsI RAATTY 2 cut(s) 305, 788
AcuI CTGAAG 1 cut(s) 879
AdeI CACNNNGTG 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 102, 694
AgsI TTSAA 8 cut(s) 44, 311, 346, 593, 641, 841, 872, 959
AjnI CCWGG 2 cut(s) 464, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
Alw26I GTCTC 1 cut(s) 1031
AlwI GGATC 2 cut(s) 103, 116
AoxI GGCC 3 cut(s) 274, 322, 1026
ApeKI GCWGC 5 cut(s) 398, 864, 931, 934, 937
ApoI RAATTY 2 cut(s) 305, 788
AspA2I CCTAGG 1 cut(s) 491
AspS9I GGNCC 4 cut(s) 275, 731, 963, 986
AsuHPI GGTGA 1 cut(s) 794
AsuNHI GCTAGC 1 cut(s) 1070
AvaII GGWCC 3 cut(s) 731, 963, 986
AvrII CCTAGG 1 cut(s) 491
BaeGI GKGCMC 2 cut(s) 776, 906
BalI TGGCCA 1 cut(s) 1028
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 2 cut(s) 224, 901
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 385, 876, 918, 946, 949
BccI CCATC 2 cut(s) 200, 679
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 466, 651
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 5 cut(s) 439, 700, 799, 925, 1045
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 3 cut(s) 117, 492, 1071
BfmI CTRYAG 3 cut(s) 270, 399, 932
BfuAI ACCTGC 1 cut(s) 922
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 6 cut(s) 399, 865, 932, 935, 938, 941
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 6 cut(s) 400, 866, 933, 936, 939, 942
Bme1390I CCNGG 2 cut(s) 466, 651
Bme18I GGWCC 3 cut(s) 731, 963, 986
BmgT120I GGNCC 4 cut(s) 275, 731, 963, 986
BmiI GGNNCC 6 cut(s) 110, 226, 733, 903, 964, 965
BmrFI CCNGG 2 cut(s) 466, 651
BmrI ACTGGG 2 cut(s) 502, 961
BmsI GCATC 1 cut(s) 654
BmtI GCTAGC 1 cut(s) 1074
BmuI ACTGGG 2 cut(s) 502, 961
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 2 cut(s) 124, 238
Bpu10I CCTNAGC 1 cut(s) 22
BsaBI GATNNNNATC 2 cut(s) 705, 747
BsaJI CCNNGG 5 cut(s) 491, 649, 650, 982, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 694
Bse1I ACTGG 5 cut(s) 191, 255, 508, 514, 967
Bse3DI GCAATG 1 cut(s) 1065
Bse8I GATNNNNATC 2 cut(s) 705, 747
BseBI CCWGG 2 cut(s) 466, 651
BseDI CCNNGG 5 cut(s) 491, 649, 650, 982, 1029
BseGI GGATG 1 cut(s) 645
BseJI GATNNNNATC 2 cut(s) 705, 747
BseLI CCNNNNNNNGG 2 cut(s) 102, 694
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 3 cut(s) 44, 95, 489
BseNI ACTGG 5 cut(s) 191, 255, 508, 514, 967
BseRI GAGGAG 2 cut(s) 220, 869
BseSI GKGCMC 2 cut(s) 776, 906
BseXI GCAGC 5 cut(s) 385, 876, 918, 946, 949
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 3 cut(s) 276, 324, 1028
BshNI GGYRCC 2 cut(s) 224, 901
BslFI GGGAC 3 cut(s) 337, 717, 949
BslI CCNNNNNNNGG 2 cut(s) 102, 694
BsmAI GTCTC 1 cut(s) 1031
BsmFI GGGAC 3 cut(s) 337, 717, 949
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 3 cut(s) 276, 324, 1028
Bsp1286I GDGCHC 2 cut(s) 776, 906
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 3 cut(s) 770, 941, 989
BspANI GGCC 3 cut(s) 276, 324, 1028
BspCNI CTCAG 3 cut(s) 45, 94, 488
BspHI TCATGA 4 cut(s) 70, 241, 784, 922
BspLI GGNNCC 6 cut(s) 110, 226, 733, 903, 964, 965
BspMAI CTGCAG 3 cut(s) 274, 403, 936
BspMI ACCTGC 1 cut(s) 922
BspOI GCTAGC 1 cut(s) 1074
BspPI GGATC 2 cut(s) 103, 116
BspT107I GGYRCC 2 cut(s) 224, 901
BsrBI CCGCTC 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 1065
BsrI ACTGG 5 cut(s) 191, 255, 508, 514, 967
BssECI CCNNGG 5 cut(s) 491, 649, 650, 982, 1029
BssT1I CCWWGG 3 cut(s) 491, 982, 1029
Bst2UI CCWGG 2 cut(s) 466, 651
Bst4CI ACNGT 2 cut(s) 302, 1107
BstC8I GCNNGC 4 cut(s) 274, 326, 772, 1072
BstDEI CTNAG 5 cut(s) 22, 53, 81, 475, 617
BstDSI CCRYGG 1 cut(s) 982
BstF5I GGATG 1 cut(s) 645
BstMAI GTCTC 1 cut(s) 1031
BstMWI GCNNNNNNNGC 4 cut(s) 334, 542, 937, 940
BstNI CCWGG 2 cut(s) 466, 651
BstSCI CCNGG 2 cut(s) 464, 649
BstSFI CTRYAG 3 cut(s) 270, 399, 932
BstSLI GKGCMC 2 cut(s) 776, 906
BstV1I GCAGC 5 cut(s) 385, 876, 918, 946, 949
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 1 cut(s) 108
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 276, 324, 1028
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 89, 903, 1103
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 4 cut(s) 274, 326, 772, 1072
CciI TCATGA 4 cut(s) 70, 241, 784, 922
Cfr13I GGNCC 4 cut(s) 275, 731, 963, 986
DdeI CTNAG 5 cut(s) 22, 53, 81, 475, 617
DraIII CACNNNGTG 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 1026
Eco130I CCWWGG 3 cut(s) 491, 982, 1029
Eco47I GGWCC 3 cut(s) 731, 963, 986
Eco57I CTGAAG 1 cut(s) 879
EcoO109I RGGNCCY 2 cut(s) 275, 963
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 464, 649
EcoT14I CCWWGG 3 cut(s) 491, 982, 1029
EcoT22I ATGCAT 2 cut(s) 727, 757
ErhI CCWWGG 3 cut(s) 491, 982, 1029
FaqI GGGAC 3 cut(s) 337, 717, 949
FauI CCCGC 1 cut(s) 763
FauNDI CATATG 1 cut(s) 727
FbaI TGATCA 5 cut(s) 439, 700, 799, 925, 1045
Fnu4HI GCNGC 6 cut(s) 399, 865, 932, 935, 938, 941
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 6 cut(s) 399, 865, 932, 935, 938, 941
FspBI CTAG 3 cut(s) 117, 492, 1071
GluI GCNGC 6 cut(s) 399, 865, 932, 935, 938, 941
GsuI CTGGAG 2 cut(s) 124, 238
HaeIII GGCC 3 cut(s) 276, 324, 1028
HindIII AAGCTT 2 cut(s) 58, 887
HinfI GANTC 2 cut(s) 31, 482
HphI GGTGA 1 cut(s) 794
Hpy188I TCNGA 2 cut(s) 15, 262
Hpy188III TCNNGA 8 cut(s) 71, 103, 168, 242, 346, 443, 785, 923
HpyAV CCTTC 7 cut(s) 137, 174, 288, 371, 548, 694, 903
HpyCH4III ACNGT 2 cut(s) 302, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 334, 542, 937, 940
HpyF3I CTNAG 5 cut(s) 22, 53, 81, 475, 617
KflI GGGWCCC 1 cut(s) 963
Ksp22I TGATCA 5 cut(s) 439, 700, 799, 925, 1045
LmnI GCTCC 3 cut(s) 152, 572, 1012
Lsp1109I GCAGC 5 cut(s) 385, 876, 918, 946, 949
LweI GCATC 1 cut(s) 654
MaeI CTAG 3 cut(s) 117, 492, 1071
MaeIII GTNAC 1 cut(s) 28
MbiI CCGCTC 1 cut(s) 991
MboII GAAGA 6 cut(s) 17, 91, 215, 334, 605, 947
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 776, 906
MlsI TGGCCA 1 cut(s) 1028
MluCI AATT 2 cut(s) 305, 788
MluNI TGGCCA 1 cut(s) 1028
MlyI GAGTC 2 cut(s) 25, 476
MmeI TCCRAC 1 cut(s) 803
Mox20I TGGCCA 1 cut(s) 1028
Mph1103I ATGCAT 2 cut(s) 727, 757
MscI TGGCCA 1 cut(s) 1028
MslI CAYNNNNRTG 4 cut(s) 136, 714, 720, 750
Msp20I TGGCCA 1 cut(s) 1028
MspA1I CMGCKG 2 cut(s) 479, 931
MspR9I CCNGG 2 cut(s) 466, 651
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 2 cut(s) 466, 651
MwoI GCNNNNNNNGC 4 cut(s) 334, 542, 937, 940
NcoI CCATGG 1 cut(s) 982
NdeI CATATG 1 cut(s) 727
NheI GCTAGC 1 cut(s) 1070
NlaIV GGNNCC 6 cut(s) 110, 226, 733, 903, 964, 965
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 2 cut(s) 727, 757
PagI TCATGA 4 cut(s) 70, 241, 784, 922
PaqCI CACCTGC 1 cut(s) 922
PasI CCCWGGG 1 cut(s) 650
PctI GAATGC 1 cut(s) 66
PkrI GCNGC 6 cut(s) 400, 866, 933, 936, 939, 942
PleI GAGTC 2 cut(s) 25, 476
PpsI GAGTC 2 cut(s) 25, 476
PpuMI RGGWCCY 1 cut(s) 963
Psp5II RGGWCCY 1 cut(s) 963
Psp6I CCWGG 2 cut(s) 464, 649
PspGI CCWGG 2 cut(s) 464, 649
PspN4I GGNNCC 6 cut(s) 110, 226, 733, 903, 964, 965
PspPI GGNCC 4 cut(s) 275, 731, 963, 986
PspPPI RGGWCCY 1 cut(s) 963
PstI CTGCAG 3 cut(s) 274, 403, 936
PsuI RGATCY 1 cut(s) 108
PvuII CAGCTG 2 cut(s) 479, 931
RseI CAYNNNNRTG 4 cut(s) 136, 714, 720, 750
SatI GCNGC 6 cut(s) 399, 865, 932, 935, 938, 941
Sau96I GGNCC 4 cut(s) 275, 731, 963, 986
SbfI CCTGCAGG 1 cut(s) 274
SchI GAGTC 2 cut(s) 25, 476
ScrFI CCNGG 2 cut(s) 466, 651
SdaI CCTGCAGG 1 cut(s) 274
SduI GDGCHC 2 cut(s) 776, 906
SfaNI GCATC 1 cut(s) 654
SfcI CTRYAG 3 cut(s) 270, 399, 932
SinI GGWCC 3 cut(s) 731, 963, 986
SmiMI CAYNNNNRTG 4 cut(s) 136, 714, 720, 750
Sse8387I CCTGCAGG 1 cut(s) 274
Sse9I AATT 2 cut(s) 305, 788
SsiI CCGC 3 cut(s) 770, 941, 989
SspMI CTAG 3 cut(s) 117, 492, 1071
StyD4I CCNGG 2 cut(s) 464, 649
StyI CCWWGG 3 cut(s) 491, 982, 1029
TaaI ACNGT 2 cut(s) 302, 1107
TaqI TCGA 1 cut(s) 993
TasI AATT 2 cut(s) 305, 788
TauI GCSGC 1 cut(s) 943
TscAI CASTG 3 cut(s) 89, 903, 1110
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 5 cut(s) 398, 864, 931, 934, 937
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 7 cut(s) 59, 87, 270, 372, 781, 801, 988
TspGWI ACGGA 2 cut(s) 387, 1025
TspRI CASTG 3 cut(s) 89, 903, 1110
VpaK11BI GGWCC 3 cut(s) 731, 963, 986
XapI RAATTY 2 cut(s) 305, 788
XcmI CCANNNNNNNNNTGG 2 cut(s) 135, 515
XmaJI CCTAGG 1 cut(s) 491
XspI CTAG 3 cut(s) 117, 492, 1071
Zsp2I ATGCAT 2 cut(s) 727, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.