FvH4_4g34860
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012163
Physical Location & Seq
Reverse (-)
32403275 .. 32405610
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34860.t1

Sequence Viewer

Length: 1239 bp
ATGGAAGAACATATGAACCCTTTGGCAGTGACTCACCTGCTTCAACACACACTGAGAAGCTTGTGCACTCAAGAAAATTCACAGTGGATTTATGCCGTTTTTTGGAGAATCCTCCCAAGAAACTACCCACCACCCAAATGGGAAGGTCATGGAGCTTATGACAGGTCGAGAGGGAACAGAAGGAACTGGATATTGGTTTGGGAAGATGGTTTCTGTAACTTTGGTGCCTCAGCTGCCTCACCAGCTCATGATCAGATCAACTCATCCAATGCTGAGTGTCCAGGTGGCCCTTCTTCAGTTTATGGTGGTGATCAATTTCAACATCACCAGTATTACCATGGCCTGCAACCTGAGCTTTTCTTCAAGATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATAGGGAAAGTGGCAGCAGATCATAGTCATAAGTGGATATACAAAGAACCAAATGATCAGCGTCAAGAAATCAACTTCTTATCAGCATGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCTCTGATAGCAGTGAGAGAGGGTGTAGTTCAGTTGGGAGCAATTAACAAGGTGGTTGAAGATCTGAGCTATGTTGTTTTGCTCAGAAAGAAGCTGAGCTACATTGAGAGCATCCCTGGAGTTCTTCTGCCTCACCCATCATCTCCATCATTCTCCAGCTTCAAGCTTGACCCTCATGGCTATGGTAATATTGGTGCTCCTCCTCCAGATCATCATAGTCATGCATGGCACGATTTCCAAGGCATGAGTACTAATGCTACAAATCTTCTTGTCCCACCACATCCAAGTACTACTCATGACCAATATTATGAGCACCATTTCAACATGAACCATCATCAAGTGCCAATGCTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTTCTCTCCAAGCTTCCCTCGGTGGTGCCCTCACTACCTAATACTACTCATGATCATAACCAGTTTCCGGAATCGTCTCATCATCATCATCATCATCAAGGAGGAGGAGCTATGCAATTTATGGCGCGTACGGATCAGCAGAAGGTGGTTGCCAAGGAGGAGACTGATGTTGAAGAAGAAGAGGAATATGGGGAACCGGATCATCAGAAGGTTTGTGGTAACGTGGGGGAGAGCAGCACTTCTATGTCCGCCGCCTACGGCCGTCAACAAGCCCGGCATTTCCATCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

413

Amino Acids

46.72

Weight (kDa)

6.23

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 14 - 215 5e-33 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 45
Acc36I ACCTGC 1 cut(s) 45
AccB1I GGYRCC 2 cut(s) 224, 970
AccII CGCG 1 cut(s) 1072
AccIII TCCGGA 1 cut(s) 1012
AciI CCGC 2 cut(s) 1194, 1197
AclWI GGATC 2 cut(s) 1086, 1152
AcoI YGGCCR 1 cut(s) 1204
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 3 cut(s) 808, 847, 1075
AfiI CCNNNNNNNGG 2 cut(s) 102, 1012
AgsI TTSAA 8 cut(s) 44, 320, 364, 617, 721, 880, 941, 1118
AjnI CCWGG 2 cut(s) 280, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AloI GAACNNNNNNTCC 2 cut(s) 518, 550
Alw21I GWGCWC 3 cut(s) 68, 757, 873
Alw26I GTCTC 2 cut(s) 1026, 1100
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 2 cut(s) 1086, 1152
Aor13HI TCCGGA 1 cut(s) 1012
AoxI GGCC 3 cut(s) 286, 340, 1204
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 233, 416, 1179
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 945
AspA2I CCTAGG 1 cut(s) 515
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 6 cut(s) 26, 231, 317, 320, 683, 1223
AvrII CCTAGG 1 cut(s) 515
BaeGI GKGCMC 2 cut(s) 68, 975
BanI GGYRCC 2 cut(s) 224, 970
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
Bbv12I GWGCWC 3 cut(s) 68, 757, 873
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 220, 428, 1191
BccI CCATC 5 cut(s) 200, 703, 712, 897, 1236
BceAI ACGGC 3 cut(s) 80, 1191, 1219
BciT130I CCWGG 2 cut(s) 282, 675
BclI TGATCA 4 cut(s) 250, 310, 457, 997
BcnI CCSGG 1 cut(s) 1219
BcoDI GTCTC 2 cut(s) 1026, 1100
BfaI CTAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 45
BglII AGATCT 2 cut(s) 378, 619
BisI GCNGC 4 cut(s) 234, 417, 1180, 1197
BlnI CCTAGG 1 cut(s) 515
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 4 cut(s) 235, 418, 1181, 1198
BmcAI AGTACT 2 cut(s) 808, 847
Bme1390I CCNGG 3 cut(s) 282, 675, 1219
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 226, 972, 1140
BmrFI CCNGG 3 cut(s) 282, 675, 1219
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 1 cut(s) 678
BmuI ACTGGG 1 cut(s) 526
BpmI CTGGAG 3 cut(s) 696, 697, 747
Bpu10I CCTNAGC 2 cut(s) 229, 351
Bpu1102I GCTNAGC 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 1219
BsaJI CCNNGG 6 cut(s) 337, 515, 673, 796, 963, 1098
BsaWI WCCGGW 2 cut(s) 1012, 1141
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1012
Bse1I ACTGG 5 cut(s) 191, 328, 532, 538, 1006
BseAI TCCGGA 1 cut(s) 1012
BseBI CCWGG 2 cut(s) 282, 675
BseDI CCNNGG 6 cut(s) 337, 515, 673, 796, 963, 1098
BseGI GGATG 3 cut(s) 263, 669, 838
BseLI CCNNNNNNNGG 2 cut(s) 102, 1012
BseMII CTCAG 8 cut(s) 44, 243, 264, 342, 513, 614, 644, 655
BseNI ACTGG 5 cut(s) 191, 328, 532, 538, 1006
BseRI GAGGAG 5 cut(s) 747, 750, 1062, 1065, 1118
BseSI GKGCMC 2 cut(s) 68, 975
BseX3I CGGCCG 1 cut(s) 1204
BseXI GCAGC 3 cut(s) 220, 428, 1191
Bsh1236I CGCG 1 cut(s) 1072
Bsh1285I CGRYCG 1 cut(s) 1207
BshFI GGCC 3 cut(s) 288, 342, 1206
BshNI GGYRCC 2 cut(s) 224, 970
BsiEI CGRYCG 1 cut(s) 1207
BsiHKAI GWGCWC 3 cut(s) 68, 757, 873
BsiSI CCGG 3 cut(s) 1013, 1142, 1219
BsiWI CGTACG 1 cut(s) 1073
BslFI GGGAC 2 cut(s) 355, 815
BslI CCNNNNNNNGG 2 cut(s) 102, 1012
BsmAI GTCTC 2 cut(s) 1026, 1100
BsmBI CGTCTC 1 cut(s) 1026
BsmFI GGGAC 2 cut(s) 355, 815
BsnI GGCC 3 cut(s) 288, 342, 1206
Bsp1286I GDGCHC 4 cut(s) 68, 757, 873, 975
Bsp13I TCCGGA 1 cut(s) 1012
Bsp1720I GCTNAGC 1 cut(s) 653
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 2 cut(s) 1194, 1197
BspANI GGCC 3 cut(s) 288, 342, 1206
BspCNI CTCAG 8 cut(s) 45, 242, 265, 343, 512, 615, 645, 654
BspEI TCCGGA 1 cut(s) 1012
BspFNI CGCG 1 cut(s) 1072
BspHI TCATGA 3 cut(s) 247, 853, 994
BspLI GGNNCC 3 cut(s) 226, 972, 1140
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 2 cut(s) 1086, 1152
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 2 cut(s) 224, 970
BsrI ACTGG 5 cut(s) 191, 328, 532, 538, 1006
BssECI CCNNGG 6 cut(s) 337, 515, 673, 796, 963, 1098
BssT1I CCWWGG 4 cut(s) 337, 515, 796, 1098
Bst2UI CCWGG 2 cut(s) 282, 675
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 2 cut(s) 951, 1119
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 8 cut(s) 53, 229, 273, 351, 499, 623, 641, 653
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 3 cut(s) 263, 669, 838
BstFNI CGCG 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 1072
BstMAI GTCTC 2 cut(s) 1026, 1100
BstMCI CGRYCG 1 cut(s) 1207
BstMWI GCNNNNNNNGC 4 cut(s) 233, 242, 352, 566
BstNI CCWGG 2 cut(s) 282, 675
BstSCI CCNGG 3 cut(s) 280, 673, 1217
BstSLI GKGCMC 2 cut(s) 68, 975
BstUI CGCG 1 cut(s) 1072
BstV1I GCAGC 3 cut(s) 220, 428, 1191
BstX2I RGATCY 2 cut(s) 378, 619
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 2 cut(s) 378, 619
BstZI CGGCCG 1 cut(s) 1204
BsuRI GGCC 3 cut(s) 288, 342, 1206
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 3 cut(s) 263, 669, 838
BtsI GCAGTG 2 cut(s) 33, 576
BtsIMutI CAGTG 5 cut(s) 33, 50, 89, 576, 1234
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 344
CciI TCATGA 3 cut(s) 247, 853, 994
CfoI GCGC 1 cut(s) 1072
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 807, 846, 1074
CviQI GTAC 3 cut(s) 807, 846, 1074
DdeI CTNAG 8 cut(s) 53, 229, 273, 351, 499, 623, 641, 653
EaeI YGGCCR 1 cut(s) 1204
EagI CGGCCG 1 cut(s) 1204
Eam1104I CTCTTC 2 cut(s) 951, 1119
EarI CTCTTC 2 cut(s) 951, 1119
EciI GGCGGA 1 cut(s) 1183
EclXI CGGCCG 1 cut(s) 1204
Eco130I CCWWGG 4 cut(s) 337, 515, 796, 1098
Eco52I CGGCCG 1 cut(s) 1204
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 280, 673
EcoT14I CCWWGG 4 cut(s) 337, 515, 796, 1098
EcoT22I ATGCAT 1 cut(s) 784
ErhI CCWWGG 4 cut(s) 337, 515, 796, 1098
Esp3I CGTCTC 1 cut(s) 1026
FaqI GGGAC 2 cut(s) 355, 815
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 4 cut(s) 250, 310, 457, 997
Fnu4HI GCNGC 4 cut(s) 234, 417, 1180, 1197
FokI GGATG 3 cut(s) 250, 656, 825
Fsp4HI GCNGC 4 cut(s) 234, 417, 1180, 1197
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 1071
GluI GCNGC 4 cut(s) 234, 417, 1180, 1197
GsuI CTGGAG 3 cut(s) 696, 697, 747
HaeIII GGCC 3 cut(s) 288, 342, 1206
HapII CCGG 3 cut(s) 1013, 1142, 1219
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 1072
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HincII GTYRAC 1 cut(s) 1211
HindII GTYRAC 1 cut(s) 1211
HindIII AAGCTT 3 cut(s) 58, 722, 956
HinfI GANTC 4 cut(s) 31, 108, 506, 1016
HpaII CCGG 3 cut(s) 1013, 1142, 1219
HphI GGTGA 6 cut(s) 26, 231, 317, 320, 683, 1223
Hpy166II GTNNAC 2 cut(s) 66, 1211
Hpy188I TCNGA 5 cut(s) 255, 564, 624, 644, 1152
Hpy188III TCNNGA 9 cut(s) 71, 168, 248, 364, 467, 764, 854, 995, 1013
Hpy8I GTNNAC 2 cut(s) 66, 1211
HpyAV CCTTC 6 cut(s) 137, 174, 300, 389, 1081, 1147
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 1167
HpyCH4V TGCA 4 cut(s) 66, 346, 782, 1060
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 242, 352, 566
HpyF3I CTNAG 8 cut(s) 53, 229, 273, 351, 499, 623, 641, 653
HpySE526I ACGT 1 cut(s) 1167
HspAI GCGC 1 cut(s) 1070
Kpn2I TCCGGA 1 cut(s) 1012
Ksp22I TGATCA 4 cut(s) 250, 310, 457, 997
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 4 cut(s) 152, 596, 760, 1052
Lsp1109I GCAGC 3 cut(s) 220, 428, 1191
LweI GCATC 1 cut(s) 678
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 1167
MaeIII GTNAC 3 cut(s) 28, 215, 1163
MflI RGATCY 2 cut(s) 378, 619
MhlI GDGCHC 4 cut(s) 68, 757, 873, 975
MluCI AATT 4 cut(s) 76, 314, 600, 1061
MlyI GAGTC 2 cut(s) 25, 500
Mph1103I ATGCAT 1 cut(s) 784
MroI TCCGGA 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 945
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 4 cut(s) 136, 738, 777, 1187
MspA1I CMGCKG 2 cut(s) 233, 503
MspI CCGG 3 cut(s) 1013, 1142, 1219
MspR9I CCNGG 3 cut(s) 282, 675, 1219
MvaI CCWGG 2 cut(s) 282, 675
MvnI CGCG 1 cut(s) 1072
MwoI GCNNNNNNNGC 4 cut(s) 233, 242, 352, 566
NciI CCSGG 1 cut(s) 1219
NcoI CCATGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 12
NlaIV GGNNCC 3 cut(s) 226, 972, 1140
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 784
PagI TCATGA 3 cut(s) 247, 853, 994
PaqCI CACCTGC 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 2 cut(s) 108, 1016
Pfl23II CGTACG 1 cut(s) 1073
PkrI GCNGC 4 cut(s) 235, 418, 1181, 1198
PleI GAGTC 2 cut(s) 25, 500
PpsI GAGTC 2 cut(s) 25, 500
Psp6I CCWGG 2 cut(s) 280, 673
PspGI CCWGG 2 cut(s) 280, 673
PspLI CGTACG 1 cut(s) 1073
PspN4I GGNNCC 3 cut(s) 226, 972, 1140
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 2 cut(s) 378, 619
PvuII CAGCTG 2 cut(s) 233, 503
RsaI GTAC 3 cut(s) 808, 847, 1075
RsaNI GTAC 3 cut(s) 807, 846, 1074
RseI CAYNNNNRTG 4 cut(s) 136, 738, 777, 1187
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 4 cut(s) 234, 417, 1180, 1197
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 2 cut(s) 808, 847
SchI GAGTC 2 cut(s) 25, 500
ScrFI CCNGG 3 cut(s) 282, 675, 1219
SduI GDGCHC 4 cut(s) 68, 757, 873, 975
SfaNI GCATC 1 cut(s) 678
SmiMI CAYNNNNRTG 4 cut(s) 136, 738, 777, 1187
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 4 cut(s) 76, 314, 600, 1061
SsiI CCGC 2 cut(s) 1194, 1197
SspI AATATT 2 cut(s) 748, 863
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 280, 673, 1217
StyI CCWWGG 4 cut(s) 337, 515, 796, 1098
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 1170
TaqI TCGA 1 cut(s) 167
TasI AATT 4 cut(s) 76, 314, 600, 1061
TatI WGTACW 2 cut(s) 806, 845
TauI GCSGC 1 cut(s) 1199
TfiI GAWTC 2 cut(s) 108, 1016
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 4 cut(s) 33, 57, 89, 576
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 233, 416, 1179
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 29, 899
TspGWI ACGGA 1 cut(s) 1091
TspRI CASTG 4 cut(s) 33, 57, 89, 576
VneI GTGCAC 1 cut(s) 64
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 3 cut(s) 135, 335, 539
XmaJI CCTAGG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 2 cut(s) 808, 847
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.