Rh4AG411900
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012163
Physical Location & Seq
Reverse (-)
71079786 .. 71082541
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG411900.1

Sequence Viewer

Length: 858 bp
ATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATAGGGAAAGTGGCAGCAGATCATAGTCATAAGTGGATATACAAAGAACCAAATGATCAGCATCAAGAAATCAACTTTTTATCAGCATGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCTCTGATAGCAGTGAGAGAAGGTGTAGTTCAGTTAGGAGCAATTAACAAGGTGGTTGAAGATCTGAGCTATGTTGTTTTGCTCAGAAAGAAGCTGAGCTACATTGAGAGCATCCCTGGAGTTCTTCTGCCTCACCCATCATCTCTATCATTCCCCAGCTTCAAGCCTGACCCTCATGGCTATGGTAATATGGGTGCCCCTCCAGATCATCATAGTCATGCATGGCACAATTTCCAAGGCATGGGCACTAATGCTACAAATCTTCATGTCCCACCACATCCAAGTGCTACTCATGACCAATATTATGAGCACCATTTCAACATGAACCATCATCAAGTGCCAATGTTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCGGTGGTGCCCTCAACACCTAATACTACTCATGATCATCACCAGTTTCCAGAATCATCTCATCATCATCATGGAGGTGGAACTATGCAATTTATGGCGACTACGGAGCAGATGGTAGTGGCCAAAGAGGAGACTGATGTTCAAGAAGAGGAGGAATACATGGCACCGGATCACAAGAACGTTTGTGTTAACACCGGGGAGAGCAGCACTTCTATGTCCGCCGCCTACGGCCGTCAACAACCCCAGCATTTCCATCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

285

Amino Acids

32.03

Weight (kDa)

6.14

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 3 - 93 3.2e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 386, 601, 757
AccB7I CCANNNNNTGG 1 cut(s) 433
AciI CCGC 2 cut(s) 813, 816
AclI AACGTT 1 cut(s) 774
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 2 cut(s) 714, 823
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 6 cut(s) 251, 355, 511, 541, 572, 737
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 8 cut(s) 137, 194, 261, 286, 291, 351, 575, 589
AluI AGCT 8 cut(s) 137, 194, 261, 286, 291, 351, 575, 589
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 771
AoxI GGCC 2 cut(s) 714, 823
ApeKI GCWGC 2 cut(s) 50, 798
AspA2I CCTAGG 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 3 cut(s) 317, 626, 842
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 3 cut(s) 391, 440, 606
BalI TGGCCA 1 cut(s) 716
BanI GGYRCC 3 cut(s) 386, 601, 757
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 62, 810
BccI CCATC 4 cut(s) 337, 528, 700, 855
BceAI ACGGC 2 cut(s) 810, 838
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 2 cut(s) 91, 628
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 1 cut(s) 150
BglII AGATCT 2 cut(s) 12, 253
BisI GCNGC 3 cut(s) 51, 799, 816
BlnI CCTAGG 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 3 cut(s) 52, 800, 817
Bme1390I CCNGG 2 cut(s) 309, 790
BmiI GGNNCC 3 cut(s) 388, 603, 759
BmrFI CCNGG 2 cut(s) 309, 790
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 106, 312
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 330, 378
Bpu1102I GCTNAGC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 790
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 5 cut(s) 149, 307, 427, 594, 789
BsaWI WCCGGW 1 cut(s) 760
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 3 cut(s) 166, 172, 637
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 5 cut(s) 149, 307, 427, 594, 789
BseGI GGATG 2 cut(s) 303, 469
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 4 cut(s) 147, 248, 278, 289
BseNI ACTGG 3 cut(s) 166, 172, 637
BseRI GAGGAG 3 cut(s) 569, 737, 758
BseSI GKGCMC 3 cut(s) 391, 440, 606
BseX3I CGGCCG 1 cut(s) 823
BseXI GCAGC 2 cut(s) 62, 810
BseYI CCCAGC 2 cut(s) 347, 837
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 2 cut(s) 716, 825
BshNI GGYRCC 3 cut(s) 386, 601, 757
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 761, 789
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 2 cut(s) 716, 825
Bsp1286I GDGCHC 4 cut(s) 391, 440, 504, 606
Bsp143I GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 2 cut(s) 813, 816
BspANI GGCC 2 cut(s) 716, 825
BspCNI CTCAG 4 cut(s) 146, 249, 279, 288
BspHI TCATGA 2 cut(s) 484, 625
BspLI GGNNCC 3 cut(s) 388, 603, 759
BspPI GGATC 1 cut(s) 771
BspT107I GGYRCC 3 cut(s) 386, 601, 757
BsrI ACTGG 3 cut(s) 166, 172, 637
BssECI CCNNGG 5 cut(s) 149, 307, 427, 594, 789
BssMI GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
BssT1I CCWWGG 2 cut(s) 149, 427
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 735
BstDEI CTNAG 4 cut(s) 133, 257, 275, 287
BstF5I GGATG 2 cut(s) 303, 469
BstKTI GATC 7 cut(s) 15, 58, 94, 256, 400, 631, 766
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 307, 788
BstSLI GKGCMC 3 cut(s) 391, 440, 606
BstV1I GCAGC 2 cut(s) 62, 810
BstX2I RGATCY 2 cut(s) 12, 253
BstYI RGATCY 2 cut(s) 12, 253
BstZI CGGCCG 1 cut(s) 823
BsuRI GGCC 2 cut(s) 716, 825
BtsCI GGATG 2 cut(s) 303, 469
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 210, 853
CciI TCATGA 2 cut(s) 484, 625
DdeI CTNAG 4 cut(s) 133, 257, 275, 287
DpnI GATC 7 cut(s) 14, 57, 93, 255, 399, 630, 765
DpnII GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
EaeI YGGCCR 2 cut(s) 714, 823
EagI CGGCCG 1 cut(s) 823
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 1 cut(s) 802
EclXI CGGCCG 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 149, 427
Eco52I CGGCCG 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 149, 427
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 149, 427
FaqI GGGAC 1 cut(s) 446
FbaI TGATCA 2 cut(s) 91, 628
Fnu4HI GCNGC 3 cut(s) 51, 799, 816
FokI GGATG 2 cut(s) 290, 456
Fsp4HI GCNGC 3 cut(s) 51, 799, 816
FspBI CTAG 1 cut(s) 150
GluI GCNGC 3 cut(s) 51, 799, 816
GsaI CCCAGC 2 cut(s) 351, 841
GsuI CTGGAG 2 cut(s) 330, 378
HaeIII GGCC 2 cut(s) 716, 825
HapII CCGG 2 cut(s) 761, 789
HincII GTYRAC 2 cut(s) 784, 830
HindII GTYRAC 2 cut(s) 784, 830
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 2 cut(s) 140, 647
HpaI GTTAAC 1 cut(s) 784
HpaII CCGG 2 cut(s) 761, 789
HphI GGTGA 3 cut(s) 317, 626, 842
Hpy166II GTNNAC 2 cut(s) 784, 830
Hpy188I TCNGA 3 cut(s) 198, 258, 278
Hpy188III TCNNGA 6 cut(s) 101, 395, 485, 626, 644, 737
Hpy8I GTNNAC 2 cut(s) 784, 830
HpyAV CCTTC 2 cut(s) 23, 206
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 2 cut(s) 413, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 4 cut(s) 133, 257, 275, 287
HpySE526I ACGT 1 cut(s) 774
Ksp22I TGATCA 2 cut(s) 91, 628
KspAI GTTAAC 1 cut(s) 784
Kzo9I GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
LmnI GCTCC 2 cut(s) 230, 700
Lsp1109I GCAGC 2 cut(s) 62, 810
LweI GCATC 2 cut(s) 106, 312
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 774
MalI GATC 7 cut(s) 14, 57, 93, 255, 399, 630, 765
MboI GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
MboII GAAGA 4 cut(s) 263, 308, 446, 752
MflI RGATCY 2 cut(s) 12, 253
MhlI GDGCHC 4 cut(s) 391, 440, 504, 606
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 3 cut(s) 234, 421, 683
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 716
Mph1103I ATGCAT 1 cut(s) 415
MscI TGGCCA 1 cut(s) 716
MseI TTAA 2 cut(s) 237, 783
MslI CAYNNNNRTG 6 cut(s) 372, 408, 474, 663, 669, 806
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 761, 789
MspR9I CCNGG 2 cut(s) 309, 790
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 790
NdeII GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
NlaIV GGNNCC 3 cut(s) 388, 603, 759
NsiI ATGCAT 1 cut(s) 415
PagI TCATGA 2 cut(s) 484, 625
PfeI GAWTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 3 cut(s) 52, 800, 817
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 347, 837
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 388, 603, 759
PsuI RGATCY 2 cut(s) 12, 253
PvuII CAGCTG 1 cut(s) 137
RseI CAYNNNNRTG 6 cut(s) 372, 408, 474, 663, 669, 806
SaqAI TTAA 2 cut(s) 237, 783
SatI GCNGC 3 cut(s) 51, 799, 816
Sau3AI GATC 7 cut(s) 12, 55, 91, 253, 397, 628, 763
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 309, 790
SduI GDGCHC 4 cut(s) 391, 440, 504, 606
SfaNI GCATC 2 cut(s) 106, 312
SmiMI CAYNNNNRTG 6 cut(s) 372, 408, 474, 663, 669, 806
Sse9I AATT 3 cut(s) 234, 421, 683
SsiI CCGC 2 cut(s) 813, 816
SspI AATATT 1 cut(s) 494
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 307, 788
StyI CCWWGG 2 cut(s) 149, 427
TaiI ACGT 1 cut(s) 777
TasI AATT 3 cut(s) 234, 421, 683
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 2 cut(s) 237, 783
Tru9I TTAA 2 cut(s) 237, 783
TscAI CASTG 1 cut(s) 210
TseI GCWGC 2 cut(s) 50, 798
TspDTI ATGAA 2 cut(s) 446, 530
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.