RchiOBHm_Chr4g0444251
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012163
Physical Location & Seq
Reverse (-)
65064250 .. 65066563
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41195

Sequence Viewer

Length: 1227 bp
ATGGAAGAACATATTAACCCTTTGGCAGTGACTCATCTGCTTCAACACACACTGAGAAGCTTGTGCAGTCAAGAAAATTCACAGTGGATTTATGCTGTCTTTTGGAGGATCCTCCCAAGAAACTACCCACCACCCAAGTGGGAAGGTCATGGAGCTTATGACAGGTCAAGAGGGAACAGAAGGAACTGGATATTGGTTTGGGAAGATGGTTTCTGCAACTTTGGTGCCTCAGCCTCACCAGCTCATGATCAGATCAACTCATCCAATGGTGAGTGTCCAGGTGGCCCTTCAGTTTATGGCGGTGATCAATTTCAACATCACCAGTACTACCATGGTCTGCAACCTGAGCTTTTCTTCAAGATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATAGGGAAAGTGGCAGCAGATCATAGTCATAAGTGGATATACAAAGAACCAAATGATCAGCATCAAGAAATCAACTTTTTATCAGCATGGCACAACTCAGCTGACTCGCACCCTAGGACATGGGAAGCCCAGTTCCAGTCTGGCATAAAGACCATAGCTCTGATAGCAGTGAGAGAAGGTGTAGTTCAGTTAGGAGCAATTAACAAGGTGGTTGAAGATCTGAGCTATGTTGTTTTGCTCAGAAAGAAGCTGAGCTACATTGAGAGCATCCCTGGAGTTCTTCTGCCTCACCCATCATCTCTATCATTCCCCAGCTTCAAGCCTGACCCTCATGGCTATGGTAATATGGGTGCCCCTCCAGATCATCATAGTCATGCATGGCACAATTTCCAAGGCATGGGCACTAATGCTACAAATCTTCTTGTCCCACCACATCCAAGTACTACTCATGACCAATATTATGAGCACCATTTCAACATGAACCATCATCAAGTGCCAATGTTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCGGTGGTGCCCTCAACACCTAATACTACTCATGATCATCACCAGTTTCCAGAATCATCTCATCATCATCATCATCATCATGGAGGTGGAACTATGCAATTTATGGCGACTACGGAGCAGATGGTAGTGGCCAAGGAGGAGACTGATGTTCAAGAAGAGGAGGAATACATGGCACCGGATCACAAGAACGTTTGTGTTAACGCCGGGGAGAGCAGCACTTCTATGTCCGCCGCCTACGGCAGTCAACAACCCCAGCATTTCCATCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

408

Amino Acids

46.22

Weight (kDa)

6.19

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 14 - 213 6.3e-33 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 224, 746, 961, 1126
AccB7I CCANNNNNTGG 1 cut(s) 793
AciI CCGC 3 cut(s) 300, 1182, 1185
AclI AACGTT 1 cut(s) 1143
AclWI GGATC 3 cut(s) 103, 116, 1140
AcoI YGGCCR 1 cut(s) 1083
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 326, 838
AfiI CCNNNNNNNGG 1 cut(s) 793
AgsI TTSAA 9 cut(s) 44, 314, 358, 611, 715, 871, 901, 932, 1106
AjnI CCWGG 2 cut(s) 277, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 136
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 3 cut(s) 103, 116, 1140
AoxI GGCC 2 cut(s) 283, 1083
ApeKI GCWGC 2 cut(s) 410, 1167
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 1159
AsuHPI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1211
AvrII CCTAGG 1 cut(s) 509
BaeGI GKGCMC 3 cut(s) 751, 800, 966
BalI TGGCCA 1 cut(s) 1085
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 4 cut(s) 224, 746, 961, 1126
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
Bbv12I GWGCWC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 422, 1179
BccI CCATC 5 cut(s) 200, 697, 888, 1069, 1224
BceAI ACGGC 1 cut(s) 1207
BciT130I CCWGG 2 cut(s) 279, 669
BclI TGATCA 4 cut(s) 247, 304, 451, 988
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 1 cut(s) 1088
BfaI CTAG 1 cut(s) 510
BglII AGATCT 2 cut(s) 372, 613
BisI GCNGC 3 cut(s) 411, 1168, 1185
BlnI CCTAGG 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 3 cut(s) 412, 1169, 1186
BmcAI AGTACT 2 cut(s) 326, 838
Bme1390I CCNGG 3 cut(s) 279, 669, 1159
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
BmrFI CCNGG 3 cut(s) 279, 669, 1159
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 466, 672
BmuI ACTGGG 1 cut(s) 520
BpmI CTGGAG 2 cut(s) 690, 738
Bpu10I CCTNAGC 2 cut(s) 229, 345
Bpu1102I GCTNAGC 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 1159
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BsaWI WCCGGW 1 cut(s) 1129
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 5 cut(s) 191, 322, 526, 532, 997
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 279, 669
BseDI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BseGI GGATG 3 cut(s) 260, 663, 829
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMII CTCAG 7 cut(s) 44, 243, 336, 507, 608, 638, 649
BseNI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BseRI GAGGAG 3 cut(s) 929, 1106, 1127
BseSI GKGCMC 3 cut(s) 751, 800, 966
BseXI GCAGC 2 cut(s) 422, 1179
BseYI CCCAGC 2 cut(s) 707, 1206
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 285, 1085
BshNI GGYRCC 4 cut(s) 224, 746, 961, 1126
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 2 cut(s) 1130, 1158
BslFI GGGAC 2 cut(s) 349, 806
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 1 cut(s) 1088
BsmFI GGGAC 2 cut(s) 349, 806
BsnI GGCC 2 cut(s) 285, 1085
Bsp1286I GDGCHC 4 cut(s) 751, 800, 864, 966
Bsp1720I GCTNAGC 1 cut(s) 647
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 3 cut(s) 300, 1182, 1185
BspANI GGCC 2 cut(s) 285, 1085
BspCNI CTCAG 7 cut(s) 45, 242, 337, 506, 609, 639, 648
BspHI TCATGA 3 cut(s) 244, 844, 985
BspLI GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
BspPI GGATC 3 cut(s) 103, 116, 1140
BspT107I GGYRCC 4 cut(s) 224, 746, 961, 1126
BsrI ACTGG 5 cut(s) 191, 322, 526, 532, 997
BssECI CCNNGG 7 cut(s) 331, 509, 667, 787, 954, 1086, 1158
BssT1I CCWWGG 4 cut(s) 331, 509, 787, 1086
Bst2UI CCWGG 2 cut(s) 279, 669
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 1104
BstDEI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 260, 663, 829
BstMAI GTCTC 1 cut(s) 1088
BstMWI GCNNNNNNNGC 3 cut(s) 239, 346, 560
BstNI CCWGG 2 cut(s) 279, 669
BstSCI CCNGG 3 cut(s) 277, 667, 1157
BstSLI GKGCMC 3 cut(s) 751, 800, 966
BstV1I GCAGC 2 cut(s) 422, 1179
BstX2I RGATCY 3 cut(s) 108, 372, 613
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 3 cut(s) 108, 372, 613
BsuRI GGCC 2 cut(s) 285, 1085
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 260, 663, 829
BtsI GCAGTG 2 cut(s) 33, 570
BtsIMutI CAGTG 5 cut(s) 33, 50, 89, 570, 1222
CciI TCATGA 3 cut(s) 244, 844, 985
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 325, 837
CviQI GTAC 2 cut(s) 325, 837
DdeI CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
EaeI YGGCCR 1 cut(s) 1083
Eam1104I CTCTTC 1 cut(s) 1104
EarI CTCTTC 1 cut(s) 1104
EciI GGCGGA 1 cut(s) 1171
Eco130I CCWWGG 4 cut(s) 331, 509, 787, 1086
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 277, 667
EcoT14I CCWWGG 4 cut(s) 331, 509, 787, 1086
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 4 cut(s) 331, 509, 787, 1086
FaqI GGGAC 2 cut(s) 349, 806
FbaI TGATCA 4 cut(s) 247, 304, 451, 988
Fnu4HI GCNGC 3 cut(s) 411, 1168, 1185
FokI GGATG 3 cut(s) 247, 650, 816
Fsp4HI GCNGC 3 cut(s) 411, 1168, 1185
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 411, 1168, 1185
GsaI CCCAGC 2 cut(s) 711, 1210
GsuI CTGGAG 2 cut(s) 690, 738
HaeIII GGCC 2 cut(s) 285, 1085
HapII CCGG 2 cut(s) 1130, 1158
HincII GTYRAC 2 cut(s) 1153, 1199
HindII GTYRAC 2 cut(s) 1153, 1199
HindIII AAGCTT 2 cut(s) 58, 947
HinfI GANTC 3 cut(s) 31, 500, 1007
HpaI GTTAAC 1 cut(s) 1153
HpaII CCGG 2 cut(s) 1130, 1158
HphI GGTGA 7 cut(s) 228, 281, 311, 314, 677, 986, 1211
Hpy166II GTNNAC 2 cut(s) 1153, 1199
Hpy188I TCNGA 4 cut(s) 252, 558, 618, 638
Hpy8I GTNNAC 2 cut(s) 1153, 1199
HpyAV CCTTC 5 cut(s) 137, 174, 297, 383, 566
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 5 cut(s) 66, 216, 340, 773, 1051
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 346, 560
HpyF3I CTNAG 7 cut(s) 53, 229, 345, 493, 617, 635, 647
HpySE526I ACGT 1 cut(s) 1143
Ksp22I TGATCA 4 cut(s) 247, 304, 451, 988
KspAI GTTAAC 1 cut(s) 1153
LmnI GCTCC 3 cut(s) 152, 590, 1069
Lsp1109I GCAGC 2 cut(s) 422, 1179
LweI GCATC 2 cut(s) 466, 672
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 7 cut(s) 17, 215, 346, 623, 668, 806, 1121
MflI RGATCY 3 cut(s) 108, 372, 613
MhlI GDGCHC 4 cut(s) 751, 800, 864, 966
MlsI TGGCCA 1 cut(s) 1085
MluCI AATT 5 cut(s) 76, 308, 594, 781, 1052
MluNI TGGCCA 1 cut(s) 1085
MlyI GAGTC 2 cut(s) 25, 494
Mox20I TGGCCA 1 cut(s) 1085
Mph1103I ATGCAT 1 cut(s) 775
MscI TGGCCA 1 cut(s) 1085
MseI TTAA 3 cut(s) 15, 597, 1152
MslI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
Msp20I TGGCCA 1 cut(s) 1085
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 1130, 1158
MspR9I CCNGG 3 cut(s) 279, 669, 1159
MvaI CCWGG 2 cut(s) 279, 669
MwoI GCNNNNNNNGC 3 cut(s) 239, 346, 560
NciI CCSGG 1 cut(s) 1159
NcoI CCATGG 1 cut(s) 331
NlaIV GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 775
OliI CACNNNNGTG 1 cut(s) 136
PagI TCATGA 3 cut(s) 244, 844, 985
PfeI GAWTC 1 cut(s) 1007
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 3 cut(s) 412, 1169, 1186
PleI GAGTC 2 cut(s) 25, 494
PpsI GAGTC 2 cut(s) 25, 494
Psp1406I AACGTT 1 cut(s) 1143
Psp6I CCWGG 2 cut(s) 277, 667
PspFI CCCAGC 2 cut(s) 707, 1206
PspGI CCWGG 2 cut(s) 277, 667
PspN4I GGNNCC 5 cut(s) 110, 226, 748, 963, 1128
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 3 cut(s) 108, 372, 613
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 326, 838
RsaNI GTAC 2 cut(s) 325, 837
RseI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
SaqAI TTAA 3 cut(s) 15, 597, 1152
SatI GCNGC 3 cut(s) 411, 1168, 1185
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 2 cut(s) 326, 838
SchI GAGTC 2 cut(s) 25, 494
ScrFI CCNGG 3 cut(s) 279, 669, 1159
SduI GDGCHC 4 cut(s) 751, 800, 864, 966
SfaNI GCATC 2 cut(s) 466, 672
SmiMI CAYNNNNRTG 6 cut(s) 136, 732, 768, 1032, 1038, 1175
Sse9I AATT 5 cut(s) 76, 308, 594, 781, 1052
SsiI CCGC 3 cut(s) 300, 1182, 1185
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 277, 667, 1157
StyI CCWWGG 4 cut(s) 331, 509, 787, 1086
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 1146
TasI AATT 5 cut(s) 76, 308, 594, 781, 1052
TatI WGTACW 2 cut(s) 324, 836
TauI GCSGC 1 cut(s) 1187
TfiI GAWTC 1 cut(s) 1007
Tru1I TTAA 3 cut(s) 15, 597, 1152
Tru9I TTAA 3 cut(s) 15, 597, 1152
TscAI CASTG 4 cut(s) 33, 57, 89, 570
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 410, 1167
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 890
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 4 cut(s) 33, 57, 89, 570
Van91I CCANNNNNTGG 1 cut(s) 793
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 3 cut(s) 135, 329, 533
XmaJI CCTAGG 1 cut(s) 509
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 2 cut(s) 326, 838
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.