Rorug04G0350900
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012163
Physical Location & Seq
Reverse (-)
52257793 .. 52264492
6700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0350900.1

Sequence Viewer

Length: 966 bp
ATGGAGGAAATGTACGGATTGCAATCAGCGGTGGACTACGGGGATAAGTCGACGGACTACGCCGACAAGGCCCTTATGACGCCGGAGAACCTGATCCTACCGATGGATTACCAGAGCCTGCTCTCCTCCGGAGCTTTCCGCGACCATAGGGTCCCGATGATGTTCGGATCCGACGCCGGCGACTTGTACTCGGCCATATCCTCCGTGCCGGAGTTTCGGCGCGGAGAGGAAGATGTTTTTGGAGCCATCAAAGCCAAAATTGCTTCCCATCCAAGCTACCCTAGACTCATTGAGGCCTACATCGATTGCCAGAAGGTAGGAGCGCCTCCGGAAATAGCGAGCTTCTTGGAGGAAATCCGCCGAGAAAATGACCTTTATAAACGAGAAAGAGACGCTGCTATGTCCACGTGTTTAGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAACCTACTGCGATATGCTGGTCAAGTACAAATCAGATCTAGCAAGGCCTTTTGATGAAGCCACCACGTTCTTGAACAAGATTGAAACGCAACTCAGCAATCTCTGCATTCGAACTCTCTCCGATGAAGGTGCTGTGTCATCAGAGGAGGAGTTCAGCGGAGGCGAATTAGAGGTACAAGAAGCTCAAGCAAGGGGAGAAGATCGAGATCTCAAAAATAGGCTTTTCCGTAAGTTTGGCAGTCATATTGGCACCTTGAAGCTGGAATTCTCCAAGAAGAAGAAGAAGGGAAAGCTTCCGAAGGAAGCAAGACAAGCGTTACTTCATTGGTGGAATGTTCACTATAAATGGCCATACCCGACGGAGGCTGATAAGATTGCACTGGCGGAATCAACGGGGCTCGATCAGAGGCAAATCAACAACTGGTTCATCAATCAGCGGAAACGTCATTGGAGACCATCTGAAAACATGCAATTTGCCGTCATGGATAACCTTTCTGGACCATTCTTTGCCGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

321

Amino Acids

36.76

Weight (kDa)

5.1

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 82 - 124 1.9e-21 KNOX1 domain
KNOX2 PF03791 137 - 184 1.4e-26 KNOX2 domain
ELK PF03789 218 - 239 5.4e-06 ELK domain
Homeobox_KN PF05920 258 - 297 1.9e-18 Homeobox KN domain
Homeodomain PF00046 265 - 298 6.5e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 50
AccII CGCG 2 cut(s) 141, 222
AccIII TCCGGA 2 cut(s) 128, 328
AciI CCGC 7 cut(s) 29, 139, 222, 358, 603, 830, 883
AclWI GGATC 4 cut(s) 88, 162, 175, 416
AcoI YGGCCR 2 cut(s) 192, 794
AcsI RAATTY 1 cut(s) 710
AcvI CACGTG 1 cut(s) 408
AcyI GRCGYC 2 cut(s) 80, 174
AfaI GTAC 4 cut(s) 14, 188, 473, 621
AfiI CCNNNNNNNGG 2 cut(s) 103, 808
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 3 cut(s) 520, 530, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 7 cut(s) 134, 276, 342, 430, 629, 706, 739
AluI AGCT 7 cut(s) 134, 276, 342, 430, 629, 706, 739
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 384, 892
AlwI GGATC 4 cut(s) 88, 162, 175, 416
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 2 cut(s) 128, 328
AoxI GGCC 5 cut(s) 69, 192, 294, 491, 794
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 710
AspLEI GCGC 2 cut(s) 222, 325
AspS9I GGNCC 3 cut(s) 70, 151, 944
AsuII TTCGAA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 151, 944
BalI TGGCCA 1 cut(s) 796
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 2 cut(s) 432, 846
BbrPI CACGTG 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 382
BccI CCATC 4 cut(s) 97, 254, 276, 910
BceAI ACGGC 1 cut(s) 908
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BcoDI GTCTC 2 cut(s) 384, 892
BfaI CTAG 2 cut(s) 282, 485
BfoI RGCGCY 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 481, 652
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme18I GGWCC 2 cut(s) 151, 944
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 70, 151, 944
BmiI GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
Bpu14I TTCGAA 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 2 cut(s) 22, 651
BsaHI GRCGYC 2 cut(s) 80, 174
BsaI GGTCTC 1 cut(s) 892
BsaWI WCCGGW 2 cut(s) 128, 328
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 808
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 831, 872
Bse8I GATNNNNATC 2 cut(s) 22, 651
BseAI TCCGGA 2 cut(s) 128, 328
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 2 cut(s) 22, 651
BseLI CCNNNNNNNGG 2 cut(s) 103, 808
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 2 cut(s) 831, 872
BseRI GAGGAG 3 cut(s) 115, 605, 608
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 2 cut(s) 141, 222
BshFI GGCC 5 cut(s) 71, 194, 296, 493, 796
BshNI GGYRCC 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 5 cut(s) 83, 129, 177, 209, 329
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 103, 808
BsmAI GTCTC 2 cut(s) 384, 892
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 71, 194, 296, 493, 796
Bso31I GGTCTC 1 cut(s) 892
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 432, 846
Bsp13I TCCGGA 2 cut(s) 128, 328
Bsp143I GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
BspACI CCGC 7 cut(s) 29, 139, 222, 358, 603, 830, 883
BspANI GGCC 5 cut(s) 71, 194, 296, 493, 796
BspCNI CTCAG 1 cut(s) 552
BspDI ATCGAT 1 cut(s) 303
BspEI TCCGGA 2 cut(s) 128, 328
BspFNI CGCG 2 cut(s) 141, 222
BspLI GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
BspPI GGATC 4 cut(s) 88, 162, 175, 416
BspT104I TTCGAA 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 2 cut(s) 831, 872
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
BssNI GRCGYC 2 cut(s) 80, 174
BstACI GRCGYC 2 cut(s) 80, 174
BstAPI GCANNNNNTGC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 3 cut(s) 119, 178, 340
BstDEI CTNAG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 141, 222
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 2 cut(s) 222, 325
BstKTI GATC 7 cut(s) 96, 170, 424, 484, 649, 655, 850
BstMAI GTCTC 2 cut(s) 384, 892
BstMBI GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
BstMWI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
BstNSI RCATGY 1 cut(s) 916
BstUI CGCG 2 cut(s) 141, 222
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 167, 481, 652
BstYI RGATCY 3 cut(s) 167, 481, 652
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 5 cut(s) 71, 194, 296, 493, 796
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 3 cut(s) 119, 178, 340
CaiI CAGNNNCTG 1 cut(s) 118
CfoI GCGC 2 cut(s) 222, 325
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 70, 151, 944
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 3 cut(s) 88, 182, 401
Csp6I GTAC 4 cut(s) 13, 187, 472, 620
CviAII CATG 3 cut(s) 442, 913, 928
CviQI GTAC 4 cut(s) 13, 187, 472, 620
DdeI CTNAG 1 cut(s) 539
DpnI GATC 7 cut(s) 95, 169, 423, 483, 648, 654, 849
DpnII GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 192, 794
EciI GGCGGA 2 cut(s) 347, 845
Ecl136II GAGCTC 1 cut(s) 430
Eco147I AGGCCT 2 cut(s) 296, 493
Eco24I GRGCYC 2 cut(s) 432, 846
Eco31I GGTCTC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 151, 944
Eco53kI GAGCTC 1 cut(s) 430
Eco72I CACGTG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 2 cut(s) 70, 151
EcoRI GAATTC 1 cut(s) 710
EcoT38I GRGCYC 2 cut(s) 432, 846
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 3 cut(s) 445, 916, 931
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 441, 912, 927
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 2 cut(s) 432, 846
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 282, 485
GlaI GCGC 2 cut(s) 221, 324
GluI GCNGC 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 5 cut(s) 71, 194, 296, 493, 796
HapII CCGG 5 cut(s) 83, 129, 177, 209, 329
HgaI GACGC 3 cut(s) 88, 182, 401
HhaI GCGC 2 cut(s) 222, 325
Hin1I GRCGYC 2 cut(s) 80, 174
Hin1II CATG 3 cut(s) 445, 916, 931
Hin6I GCGC 2 cut(s) 220, 323
HinP1I GCGC 2 cut(s) 220, 323
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 2 cut(s) 285, 833
HpaII CCGG 5 cut(s) 83, 129, 177, 209, 329
Hpy166II GTNNAC 4 cut(s) 34, 51, 405, 784
Hpy188I TCNGA 8 cut(s) 167, 172, 481, 568, 589, 744, 852, 907
Hpy188III TCNNGA 7 cut(s) 129, 154, 329, 425, 517, 650, 942
Hpy8I GTNNAC 4 cut(s) 34, 51, 405, 784
Hpy99I CGWCG 4 cut(s) 55, 176, 808, 962
HpyAV CCTTC 4 cut(s) 307, 566, 724, 739
HpyCH4IV ACGT 3 cut(s) 407, 512, 889
HpyCH4V TGCA 4 cut(s) 22, 552, 824, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 3 cut(s) 407, 512, 889
Hsp92I GRCGYC 2 cut(s) 80, 174
Hsp92II CATG 3 cut(s) 445, 916, 931
HspAI GCGC 2 cut(s) 220, 323
KflI GGGWCCC 1 cut(s) 151
Kpn2I TCCGGA 2 cut(s) 128, 328
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
LmnI GCTCC 4 cut(s) 131, 242, 320, 416
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 2 cut(s) 282, 485
MaeII ACGT 3 cut(s) 407, 512, 889
MaeIII GTNAC 1 cut(s) 762
MalI GATC 7 cut(s) 95, 169, 423, 483, 648, 654, 849
MboI GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
MboII GAAGA 5 cut(s) 242, 656, 733, 736, 739
MflI RGATCY 3 cut(s) 167, 481, 652
MhlI GDGCHC 2 cut(s) 432, 846
MlsI TGGCCA 1 cut(s) 796
MluCI AATT 4 cut(s) 258, 611, 710, 917
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 796
MreI CGCCGGCG 1 cut(s) 176
MroI TCCGGA 2 cut(s) 128, 328
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 796
Msp20I TGGCCA 1 cut(s) 796
MspA1I CMGCKG 3 cut(s) 29, 603, 883
MspI CCGG 5 cut(s) 83, 129, 177, 209, 329
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 2 cut(s) 141, 222
MwoI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 3 cut(s) 445, 916, 931
NlaIV GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
NmeAIII GCCGAG 2 cut(s) 170, 386
NspI RCATGY 1 cut(s) 916
NspV TTCGAA 1 cut(s) 556
PceI AGGCCT 2 cut(s) 296, 493
PctI GAATGC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 833
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 408
PmlI CACGTG 1 cut(s) 408
PpsI GAGTC 1 cut(s) 279
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 151
PspCI CACGTG 1 cut(s) 408
PspN4I GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
PspPI GGNCC 3 cut(s) 70, 151, 944
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 3 cut(s) 167, 481, 652
RsaI GTAC 4 cut(s) 14, 188, 473, 621
RsaNI GTAC 4 cut(s) 13, 187, 472, 620
SacI GAGCTC 1 cut(s) 432
SalI GTCGAC 1 cut(s) 49
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 7 cut(s) 93, 167, 421, 481, 646, 652, 847
Sau96I GGNCC 3 cut(s) 70, 151, 944
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 2 cut(s) 432, 846
SfuI TTCGAA 1 cut(s) 556
SgrAI CRCCGGYG 1 cut(s) 176
SinI GGWCC 2 cut(s) 151, 944
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 4 cut(s) 258, 611, 710, 917
SseBI AGGCCT 2 cut(s) 296, 493
SsiI CCGC 7 cut(s) 29, 139, 222, 358, 603, 830, 883
SspMI CTAG 2 cut(s) 282, 485
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 2 cut(s) 296, 493
TaiI ACGT 3 cut(s) 410, 515, 892
TaqI TCGA 6 cut(s) 50, 303, 432, 556, 649, 846
TasI AATT 4 cut(s) 258, 611, 710, 917
TatI WGTACW 2 cut(s) 186, 471
TfiI GAWTC 1 cut(s) 833
TscAI CASTG 1 cut(s) 831
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 5 cut(s) 430, 516, 585, 758, 862
TspGWI ACGGA 5 cut(s) 30, 68, 193, 662, 821
TspRI CASTG 1 cut(s) 831
VpaK11BI GGWCC 2 cut(s) 151, 944
XapI RAATTY 1 cut(s) 710
XceI RCATGY 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 2 cut(s) 282, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.