Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

22337253 .. 22339736

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATAAAGAGACGATTTTACAAGCTTGAGCATGGTGATAAAGACAGTGGATCCGATTCATCGTGCTTCTCTTCTGACTCTGATCCTGAGACGGAAGAATCAGAACAATCTGAAGAAGAAGACTCTGTTGCAGAAGTTTCCGAGGACGGTGATGATTCAGGAGATGATGAATCCCCAGCTGCTGGCGAAGACGCTGATGTTGATGATGGTGATGATAACTCTGATGCTGATGACTATGGTGGGACATTGGAGAAGATGTCAATGAATCGTTTTTTAGAAGAACCACCCGAAGAAGAGGAAGAGAACTATATTCTCGGTTGTATGATACAATCCAAATCGGTTTATAAATGCAGATATTGTCCAACCGTTGTTTGCTTGAATGAGAACACAATGCAAGCACATGTTTCATCAAAGAAGCATGCTCGTATGGAGAAATTAGTGAAAGAAGGAAAGATTAGAACTGATGACGAAGAAGTTGACGATCTAGAGACAGCATCTCAGGAGAAGGAGAAAAAAGGAAACAGAAGATCACAAAGACAGGGAAAGAGATCTCAAAAACAGGAAAAGGATTCATTGACCAAAAATGGAGAAAACGAAGAAGTTGAAGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGAAACAGAAGAGCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGATTCATCGACCAAACATGGAGAAAACGAAGAGGTTGACAATTCAGGGACGCCATCTCAGGGGAAGCAGATAAAAGAAAACAGTAGAGCACGAAGACAGCGTAAGAGATTAGAAAAACAGGGAAAGGGTTCATTAACCAAACATGGAGAAAACGAAGAAGTTGACAATCCAGAGACACCATCACAGGAGAAGCAGATAAAAGGAAACAGTAGCTCACGAAGACAGCTTAAGAGATCAGAAAAACAGGAAAAGATTCCATCGACTAAGGAAGGAGAAAACGAAGATGCATCACAAAAATCTAGAAAGAAAAGGCGTCAAACTAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

340

Amino Acids

38.78

Weight (kDa)

5.09

Isoelectric Point (pI)

81.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	182
AclWI	GGATC	4 cut(s)	45, 58, 77, 602
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	3 cut(s)	617, 743, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	182, 752
AflII	CTTAAG	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	379, 605
AluBI	AGCT	6 cut(s)	25, 179, 656, 667, 906, 919
AluI	AGCT	6 cut(s)	25, 179, 656, 667, 906, 919
Alw21I	GWGCWC	2 cut(s)	658, 784
Alw26I	GTCTC	5 cut(s)	4, 83, 482, 608, 860
AlwI	GGATC	4 cut(s)	45, 58, 77, 602
AlwNI	CAGNNNCTG	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	820, 945
AsuHPI	GGTGA	3 cut(s)	47, 161, 221
BamHI	GGATCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	658
BbsI	GAAGAC	4 cut(s)	126, 195, 793, 919
Bbv12I	GWGCWC	2 cut(s)	658, 784
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	5 cut(s)	200, 628, 754, 880, 958
BcoDI	GTCTC	5 cut(s)	4, 83, 482, 608, 860
BfaI	CTAG	2 cut(s)	485, 993
BfrI	CTTAAG	1 cut(s)	920
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	4 cut(s)	214, 503, 967, 989
BpiI	GAAGAC	4 cut(s)	126, 195, 793, 919
Bpu10I	CCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	47
BsaHI	GRCGYC	3 cut(s)	617, 743, 1006
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 752
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	182, 752
BseMII	CTCAG	4 cut(s)	78, 512, 638, 764
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	658, 784
BslFI	GGGAC	2 cut(s)	256, 754
BslI	CCNNNNNNNGG	2 cut(s)	182, 752
BsmAI	GTCTC	5 cut(s)	4, 83, 482, 608, 860
BsmBI	CGTCTC	3 cut(s)	4, 83, 608
BsmFI	GGGAC	2 cut(s)	256, 754
Bsp1286I	GDGCHC	2 cut(s)	658, 784
Bsp143I	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
BspCNI	CTCAG	4 cut(s)	79, 511, 637, 763
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	4 cut(s)	45, 58, 77, 602
BspQI	GCTCTTC	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	920
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
BssNI	GRCGYC	3 cut(s)	617, 743, 1006
Bst4CI	ACNGT	5 cut(s)	47, 149, 367, 776, 902
Bst6I	CTCTTC	5 cut(s)	76, 288, 294, 646, 717
BstACI	GRCGYC	3 cut(s)	617, 743, 1006
BstAFI	CTTAAG	1 cut(s)	920
BstC8I	GCNNGC	3 cut(s)	184, 396, 420
BstDEI	CTNAG	7 cut(s)	87, 498, 624, 668, 750, 957, 1014
BstKTI	GATC	8 cut(s)	53, 85, 484, 530, 551, 610, 677, 929
BstMAI	GTCTC	5 cut(s)	4, 83, 482, 608, 860
BstMBI	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
BstNSI	RCATGY	2 cut(s)	404, 422
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	4 cut(s)	126, 195, 793, 919
BstX2I	RGATCY	3 cut(s)	50, 548, 607
BstYI	RGATCY	3 cut(s)	50, 548, 607
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	184, 396, 420
CaiI	CAGNNNCTG	1 cut(s)	182
CseI	GACGC	4 cut(s)	200, 625, 751, 995
CviAII	CATG	5 cut(s)	32, 401, 419, 710, 836
CviJI	RGCY	6 cut(s)	25, 179, 656, 667, 906, 919
CviKI_1	RGCY	6 cut(s)	25, 179, 656, 667, 906, 919
DdeI	CTNAG	7 cut(s)	87, 498, 624, 668, 750, 957, 1014
DpnI	GATC	8 cut(s)	52, 84, 483, 529, 550, 609, 676, 928
DpnII	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
Eam1104I	CTCTTC	5 cut(s)	76, 288, 294, 646, 717
EarI	CTCTTC	5 cut(s)	76, 288, 294, 646, 717
Ecl136II	GAGCTC	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	1 cut(s)	658
Esp3I	CGTCTC	3 cut(s)	4, 83, 608
FaeI	CATG	5 cut(s)	35, 404, 422, 713, 839
FaqI	GGGAC	2 cut(s)	256, 754
FatI	CATG	5 cut(s)	31, 400, 418, 709, 835
Fnu4HI	GCNGC	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	485, 993
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	179
HgaI	GACGC	4 cut(s)	200, 625, 751, 995
Hin1I	GRCGYC	3 cut(s)	617, 743, 1006
Hin1II	CATG	5 cut(s)	35, 404, 422, 713, 839
HincII	GTYRAC	3 cut(s)	478, 730, 856
HindII	GTYRAC	3 cut(s)	478, 730, 856
HindIII	AAGCTT	1 cut(s)	23
HphI	GGTGA	3 cut(s)	47, 161, 221
Hpy166II	GTNNAC	3 cut(s)	478, 730, 856
Hpy188I	TCNGA	9 cut(s)	55, 76, 82, 103, 112, 142, 223, 660, 931
Hpy188III	TCNNGA	9 cut(s)	86, 159, 485, 500, 611, 626, 863, 909, 993
Hpy8I	GTNNAC	3 cut(s)	478, 730, 856
HpyAV	CCTTC	3 cut(s)	440, 499, 956
HpyCH4III	ACNGT	5 cut(s)	47, 149, 367, 776, 902
HpyCH4V	TGCA	4 cut(s)	131, 351, 394, 980
HpyF3I	CTNAG	7 cut(s)	87, 498, 624, 668, 750, 957, 1014
Hsp92I	GRCGYC	3 cut(s)	617, 743, 1006
Hsp92II	CATG	5 cut(s)	35, 404, 422, 713, 839
Kzo9I	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
LguI	GCTCTTC	1 cut(s)	646
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	4 cut(s)	214, 503, 967, 989
MaeI	CTAG	2 cut(s)	485, 993
MalI	GATC	8 cut(s)	52, 84, 483, 529, 550, 609, 676, 928
MboI	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
MflI	RGATCY	3 cut(s)	50, 548, 607
MhlI	GDGCHC	2 cut(s)	658, 784
MluCI	AATT	2 cut(s)	434, 733
MlyI	GAGTC	2 cut(s)	71, 116
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	136, 289, 718
Mph1103I	ATGCAT	1 cut(s)	982
MroXI	GAANNNNTTC	2 cut(s)	820, 945
MseI	TTAA	2 cut(s)	827, 921
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	920
NdeII	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
NlaIII	CATG	5 cut(s)	35, 404, 422, 713, 839
NlaIV	GGNNCC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	2 cut(s)	404, 422
PaeI	GCATGC	1 cut(s)	422
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PdmI	GAANNNNTTC	2 cut(s)	820, 945
PfeI	GAWTC	8 cut(s)	56, 98, 155, 170, 265, 569, 695, 946
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	2 cut(s)	71, 116
PpsI	GAGTC	2 cut(s)	71, 116
PscI	ACATGT	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	50, 548, 607
PvuII	CAGCTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	646
SaqAI	TTAA	2 cut(s)	827, 921
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	8 cut(s)	50, 82, 481, 527, 548, 607, 674, 926
SchI	GAGTC	2 cut(s)	71, 116
SduI	GDGCHC	2 cut(s)	658, 784
SetI	ASST	7 cut(s)	27, 181, 658, 669, 729, 908, 921
SfaNI	GCATC	4 cut(s)	214, 503, 967, 989
SmlI	CTYRAG	2 cut(s)	26, 920
SmoI	CTYRAG	2 cut(s)	26, 920
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	2 cut(s)	434, 733
SspMI	CTAG	2 cut(s)	485, 993
SstI	GAGCTC	1 cut(s)	658
TaaI	ACNGT	5 cut(s)	47, 149, 367, 776, 902
TaqI	TCGA	2 cut(s)	701, 953
TasI	AATT	2 cut(s)	434, 733
TfiI	GAWTC	8 cut(s)	56, 98, 155, 170, 265, 569, 695, 946
Tru1I	TTAA	2 cut(s)	827, 921
Tru9I	TTAA	2 cut(s)	827, 921
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	7 cut(s)	48, 183, 278, 396, 561, 687, 813
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	182
Vha464I	CTTAAG	1 cut(s)	920
XbaI	TCTAGA	2 cut(s)	484, 992
XceI	RCATGY	2 cut(s)	404, 422
XmnI	GAANNNNTTC	2 cut(s)	820, 945
XspI	CTAG	2 cut(s)	485, 993
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.