Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

26114431 .. 26119121

Gene Structure 4691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCGAATCAATCTTCATCTTCTTCTTCGGATTCTGAAATTGAAGCAGCAGCAGAAGCAGAAGCCACTGAAGGCTCCGAATACGATGACGACGATGCAGTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGATATAAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCAGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGACGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGGTGAGTTGTTATTGCATTTTTATCTCTCTTTCTGGAATCAAATCATTATTAGTTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

4.52

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	138, 482
AcyI	GRCGYC	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	92, 152, 317, 403, 436
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	207, 322
AluI	AGCT	2 cut(s)	207, 322
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	95, 98
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AsuHPI	GGTGA	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	107, 110
BccI	CCATC	2 cut(s)	19, 248
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	11, 96, 99
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	3 cut(s)	12, 97, 100
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	133, 145
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu1102I	GCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	169, 172
BseXI	GCAGC	2 cut(s)	107, 110
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	337, 357
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	208, 323, 531
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 204, 414, 452
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	107, 110
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	3 cut(s)	114, 333, 353
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	2 cut(s)	32, 232
CviJI	RGCY	6 cut(s)	113, 123, 207, 322, 446, 455
CviKI_1	RGCY	6 cut(s)	113, 123, 207, 322, 446, 455
DdeI	CTNAG	3 cut(s)	208, 323, 531
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	138, 482
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	2 cut(s)	35, 235
FaiI	YATR	5 cut(s)	33, 192, 233, 378, 415
FatI	CATG	2 cut(s)	31, 231
Fnu4HI	GCNGC	3 cut(s)	11, 96, 99
FokI	GGATG	1 cut(s)	513
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	11, 96, 99
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	3 cut(s)	11, 96, 99
HaeIII	GGCC	1 cut(s)	446
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	35, 235
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	15, 55, 80, 350, 507
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	5 cut(s)	79, 85, 127, 310, 462
Hpy188III	TCNNGA	3 cut(s)	186, 317, 504
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	337, 357
HpyCH4V	TGCA	3 cut(s)	146, 408, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 204, 414, 452
HpyF3I	CTNAG	3 cut(s)	208, 323, 531
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	35, 235
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	8 cut(s)	171, 222, 258, 272, 299, 384, 394, 489
Lsp1109I	GCAGC	2 cut(s)	107, 110
LweI	GCATC	2 cut(s)	133, 145
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	420
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	6 cut(s)	54, 60, 63, 66, 164, 452
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	87, 311, 396, 423
MmeI	TCCRAC	2 cut(s)	198, 354
MnlI	CCTC	6 cut(s)	61, 190, 193, 193, 436, 444
MseI	TTAA	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	104, 204, 414, 452
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	35, 235
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	446
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	15, 55, 80, 350, 507
PkrI	GCNGC	3 cut(s)	12, 97, 100
PscI	ACATGT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	124
PsrI	GAACNNNNNNTAC	2 cut(s)	289, 321
PsuI	RGATCY	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	11, 96, 99
Sau3AI	GATC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	6 cut(s)	169, 209, 241, 291, 324, 474
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	133, 145
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	4 cut(s)	87, 311, 396, 423
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	337, 357
TaqI	TCGA	1 cut(s)	53
TasI	AATT	4 cut(s)	87, 311, 396, 423
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	5 cut(s)	15, 55, 80, 350, 507
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	3 cut(s)	121, 340, 360
TseI	GCWGC	2 cut(s)	95, 98
TspDTI	ATGAA	5 cut(s)	54, 231, 276, 453, 515
TspRI	CASTG	3 cut(s)	121, 340, 360
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	235
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.