Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004413.1

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

113948 .. 116542

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004413.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgtgggtaggtcaattacgtcagaaaacatcgcgccgcgtcgtccttactgtttctctctccctctcgtcgctctttgtttgtttgtttgtgttaaacttgggacaaggcaaaatgataaagcggcgattctacaagatggaacatggcgacagagatgacgcctcgaatcaatcttcatcttcttcttcggattctgaaattgaagcagaagcagaagcagaagcagaagccactgagggctccgaatacgatgacgacgatgcagttgaagatgctgaacaaccttgttccaactcctcctctggatatcaaagcgaggatagctcagcaaatgaaacccttgttgacatgtcagattgtccggtagatgatggaaatgaaagagaaagtcttaaagatgaccaggtgtttggtaaaagtggttcagaatttcaagagctaagttccaacactgttgctgacaaggaatcactgtcagtagatctcccagagtatgttgtgaaacgcaaatcaattttcaagtgcaggatatgccctagaattgtttgtttgaatgaagaggccttgagggctcatctgaagtccaagagacatgctcggtctgagaaattattgaatgaaggtaggttgaagactgtgctgaacagtgatgggaaacttgatgaagaagaaacccctgctttatatgctcgaatccttgcttcttcacaggctttgccaagaaagaaaagtaaacaagaggataaaagcaggccaagaaagaagagaatgagatatgataataagaaatccaaaggaagttcaggcaagaaaaggcgccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

275

Amino Acids

30.89

Weight (kDa)

6.4

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	819
AccII	CGCG	2 cut(s)	34, 39
AciI	CCGC	2 cut(s)	37, 124
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	2 cut(s)	162, 820
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	7 cut(s)	206, 272, 437, 523, 556, 619, 634
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	327, 442
AluI	AGCT	2 cut(s)	327, 442
Alw26I	GTCTC	1 cut(s)	586
AoxI	GGCC	2 cut(s)	564, 755
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	2 cut(s)	36, 822
BanI	GGYRCC	1 cut(s)	819
BanII	GRGCYC	2 cut(s)	245, 577
BbsI	GAAGAC	1 cut(s)	641
BccI	CCATC	3 cut(s)	133, 368, 647
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	2 cut(s)	37, 125
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	38, 126
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	244, 821
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	253, 265
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	4 cut(s)	311, 343, 583, 615
Bpu1102I	GCTNAGC	1 cut(s)	328
BpuEI	CTTGAG	1 cut(s)	589
BsaHI	GRCGYC	2 cut(s)	162, 820
BsaWI	WCCGGW	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	407
BseMII	CTCAG	3 cut(s)	228, 342, 597
BseRI	GAGGAG	2 cut(s)	289, 292
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	2 cut(s)	34, 39
BshFI	GGCC	2 cut(s)	566, 757
BshNI	GGYRCC	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	566, 757
Bsp1286I	GDGCHC	2 cut(s)	245, 577
Bsp143I	GATC	1 cut(s)	484
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	37, 124
BspANI	GGCC	2 cut(s)	566, 757
BspCNI	CTCAG	3 cut(s)	229, 341, 598
BspFNI	CGCG	2 cut(s)	34, 39
BspLI	GGNNCC	2 cut(s)	244, 821
BspT107I	GGYRCC	1 cut(s)	819
BssMI	GATC	1 cut(s)	484
BssNI	GRCGYC	2 cut(s)	162, 820
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	5 cut(s)	52, 457, 477, 640, 650
Bst6I	CTCTTC	2 cut(s)	555, 761
BstACI	GRCGYC	2 cut(s)	162, 820
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	4 cut(s)	237, 328, 443, 606
BstFNI	CGCG	2 cut(s)	34, 39
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	2 cut(s)	36, 822
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 534, 572, 689
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	2 cut(s)	355, 599
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	34, 39
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	566, 757
BtgZI	GCGATG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	234, 453, 473, 655
Cac8I	GCNNGC	1 cut(s)	755
CfoI	GCGC	2 cut(s)	36, 822
CseI	GACGC	2 cut(s)	28, 170
CsiI	ACCWGGT	1 cut(s)	405
CviAII	CATG	3 cut(s)	146, 352, 596
CviJI	RGCY	8 cut(s)	233, 243, 327, 442, 566, 575, 716, 757
CviKI_1	RGCY	8 cut(s)	233, 243, 327, 442, 566, 575, 716, 757
DdeI	CTNAG	4 cut(s)	237, 328, 443, 606
DinI	GGCGCC	1 cut(s)	821
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	555, 761
EarI	CTCTTC	2 cut(s)	555, 761
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	2 cut(s)	245, 577
Eco32I	GATATC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	245, 577
EgeI	GGCGCC	1 cut(s)	821
EheI	GGCGCC	1 cut(s)	821
FaeI	CATG	3 cut(s)	149, 355, 599
FaiI	YATR	8 cut(s)	147, 353, 498, 535, 597, 688, 690, 780
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	145, 351, 595
Fnu4HI	GCNGC	2 cut(s)	37, 125
FriOI	GRGCYC	2 cut(s)	245, 577
Fsp4HI	GCNGC	2 cut(s)	37, 125
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	2 cut(s)	35, 821
GluI	GCNGC	2 cut(s)	37, 125
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	2 cut(s)	566, 757
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	2 cut(s)	28, 170
HhaI	GCGC	2 cut(s)	36, 822
Hin1I	GRCGYC	2 cut(s)	162, 820
Hin1II	CATG	3 cut(s)	149, 355, 599
Hin6I	GCGC	2 cut(s)	34, 820
HinP1I	GCGC	2 cut(s)	34, 820
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	5 cut(s)	129, 169, 194, 470, 696
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	349, 737
Hpy188I	TCNGA	8 cut(s)	24, 193, 199, 247, 358, 430, 582, 607
Hpy188III	TCNNGA	2 cut(s)	306, 437
Hpy8I	GTNNAC	2 cut(s)	349, 737
Hpy99I	CGWCG	3 cut(s)	44, 73, 263
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	5 cut(s)	52, 457, 477, 640, 650
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	266, 528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 534, 572, 689
HpyF3I	CTNAG	4 cut(s)	237, 328, 443, 606
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	2 cut(s)	162, 820
Hsp92II	CATG	3 cut(s)	149, 355, 599
HspAI	GCGC	2 cut(s)	34, 820
KasI	GGCGCC	1 cut(s)	819
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	1 cut(s)	248
LweI	GCATC	2 cut(s)	253, 265
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	19
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	245, 577
MluCI	AATT	6 cut(s)	14, 201, 431, 516, 543, 611
Mly113I	GGCGCC	1 cut(s)	820
MmeI	TCCRAC	2 cut(s)	318, 474
MnlI	CCTC	9 cut(s)	74, 175, 232, 310, 313, 313, 556, 564, 736
MseI	TTAA	2 cut(s)	95, 396
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	2 cut(s)	34, 39
MwoI	GCNNNNNNNGC	4 cut(s)	324, 534, 572, 689
NarI	GGCGCC	1 cut(s)	820
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	3 cut(s)	149, 355, 599
NlaIV	GGNNCC	2 cut(s)	244, 821
NspI	RCATGY	2 cut(s)	355, 599
PceI	AGGCCT	1 cut(s)	566
PciI	ACATGT	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	5 cut(s)	129, 169, 194, 470, 696
PkrI	GCNGC	2 cut(s)	38, 126
PluTI	GGCGCC	1 cut(s)	823
PscI	ACATGT	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	244, 821
PsrI	GAACNNNNNNTAC	2 cut(s)	409, 441
PsuI	RGATCY	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	95, 396
SatI	GCNGC	2 cut(s)	37, 125
Sau3AI	GATC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	245, 577
SetI	ASST	8 cut(s)	13, 22, 289, 329, 411, 444, 628, 632
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	253, 265
SfoI	GGCGCC	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	6 cut(s)	14, 201, 431, 516, 543, 611
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	2 cut(s)	37, 124
SspDI	GGCGCC	1 cut(s)	819
SspMI	CTAG	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	5 cut(s)	52, 457, 477, 640, 650
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	167, 694
TaqII	GACCGA	1 cut(s)	591
TasI	AATT	6 cut(s)	14, 201, 431, 516, 543, 611
TauI	GCSGC	2 cut(s)	39, 127
TfiI	GAWTC	5 cut(s)	129, 169, 194, 470, 696
Tru1I	TTAA	2 cut(s)	95, 396
Tru9I	TTAA	2 cut(s)	95, 396
TscAI	CASTG	4 cut(s)	241, 460, 480, 655
TspDTI	ATGAA	6 cut(s)	168, 351, 396, 573, 636, 681
TspRI	CASTG	4 cut(s)	241, 460, 480, 655
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	2 cut(s)	355, 599
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.