Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

16895831 .. 16898869

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCGAATCAATCTTCATCTTCTTCGGATTCTGAAATAGAAGCAGAAGCAGAAGCAGAAGCCACTGAAGGCTCCGAATACGATGACGACGATGCAGTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGATATAAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCAGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGACGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGGTGAGTTGTTATTGCATGTTTATCTCTCTTTCTGGAATCAAATCATTATTAGTTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

176

Amino Acids

19.43

Weight (kDa)

4.49

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	2 cut(s)	135, 479
AcyI	GRCGYC	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	4 cut(s)	149, 314, 400, 433
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	2 cut(s)	204, 319
AluI	AGCT	2 cut(s)	204, 319
AoxI	GGCC	1 cut(s)	441
ApoI	RAATTY	1 cut(s)	308
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AsuHPI	GGTGA	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	454
BccI	CCATC	2 cut(s)	19, 245
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	449
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	130, 142
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	166, 169
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	334, 354
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	205, 320, 528
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 411, 449
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	232, 487
BstSCI	CCNGG	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	111, 330, 350
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	282
CviAII	CATG	3 cut(s)	32, 229, 484
CviJI	RGCY	6 cut(s)	110, 120, 204, 319, 443, 452
CviKI_1	RGCY	6 cut(s)	110, 120, 204, 319, 443, 452
DdeI	CTNAG	3 cut(s)	205, 320, 528
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	135, 479
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	35, 232, 487
FaiI	YATR	6 cut(s)	33, 189, 230, 375, 412, 485
FatI	CATG	3 cut(s)	31, 228, 483
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	443
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	35, 232, 487
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	15, 55, 77, 347, 504
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	5 cut(s)	76, 82, 124, 307, 459
Hpy188III	TCNNGA	3 cut(s)	183, 314, 501
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	334, 354
HpyCH4V	TGCA	3 cut(s)	143, 405, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 411, 449
HpyF3I	CTNAG	3 cut(s)	205, 320, 528
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	35, 232, 487
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	168, 219, 255, 269, 296, 381, 391, 486
LweI	GCATC	2 cut(s)	130, 142
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	1 cut(s)	417
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	54, 60, 63, 161, 449
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	3 cut(s)	308, 393, 420
MmeI	TCCRAC	2 cut(s)	195, 351
MnlI	CCTC	6 cut(s)	61, 187, 190, 190, 433, 441
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	201, 411, 449
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	35, 232, 487
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	2 cut(s)	232, 487
PceI	AGGCCT	1 cut(s)	443
PciI	ACATGT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	5 cut(s)	15, 55, 77, 347, 504
PkrI	GCNGC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PsuI	RGATCY	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	6 cut(s)	166, 206, 238, 288, 321, 471
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	130, 142
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	3 cut(s)	308, 393, 420
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	334, 354
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	308, 393, 420
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	5 cut(s)	15, 55, 77, 347, 504
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	118, 337, 357
TspDTI	ATGAA	5 cut(s)	54, 228, 273, 450, 512
TspRI	CASTG	3 cut(s)	118, 337, 357
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	232, 487
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.