Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

5972313 .. 5975131

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGTATTAATACAGAAGAAAATAGATGGAGCCGCCCTGGAAGAGGCAAAATGATAAAGCGGCGATTCTATAGGATGGAACACGGCGACAGAGATGGCGCCTCCAATCAATCCTCCTCTTCTTCTTCCGATTCTGAAATACAAGTCCACTCAGAAGCAGAAGCAGAAGACGTCTCCTCTGGATATAAAACCGAGGATAGCTCCGCCAATGAAACCCTTGTTGACACCTCAGCCTCAGGTTTCCCAATAGATGATGGAAATGAAGGAGATAGTCCTAAACACGACCTGGTGTTTGGTAGAAGTGATTCTGAATTTCAAGAGCAAGGTTCCAACATTTCTGCTGACAAGGAATCACCGTCTGCAGATCTCCCAGAATATGTTGTGAAACGCAAATCTACTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGTGCTCATCTGAAGTCCAAGAGACATGCTCGGTCTGAGAAATTATTGAATGAAGGTCGGCTGAAAGCTGTGCTGAACAGTGATGGGAAACTTGATGAAGAAGACACCCCTGCTTTATATGCTCGAATCCTTGCTTCTCCACAGGCTTTTCCAAGAAAAAGAAGTAAACAAGAGGATAAAAGAAGGCCAAGAAAGAAGAGAATGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

220

Amino Acids

24.63

Weight (kDa)

8.36

Isoelectric Point (pI)

73.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	3 cut(s)	34, 61, 204
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	2 cut(s)	99, 171
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	317, 403, 436, 499
AjnI	CCWGG	2 cut(s)	37, 285
AluBI	AGCT	2 cut(s)	201, 518
AluI	AGCT	2 cut(s)	201, 518
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	178, 466
AoxI	GGCC	2 cut(s)	444, 635
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AseI	ATTAAT	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	345
AxyI	CCTNAGG	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	98
BbsI	GAAGAC	2 cut(s)	174, 558
Bbv12I	GWGCWC	1 cut(s)	457
BbvCI	CCTCAGC	1 cut(s)	229
BccI	CCATC	5 cut(s)	21, 70, 89, 248, 527
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	39, 287
BcoDI	GTCTC	2 cut(s)	178, 466
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	70, 360
BfoI	RGCGCY	1 cut(s)	102
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	2 cut(s)	34, 62
BlsI	GCNGC	2 cut(s)	35, 63
Bme1390I	CCNGG	2 cut(s)	39, 287
BmiI	GGNNCC	3 cut(s)	32, 100, 328
BmrFI	CCNGG	2 cut(s)	39, 287
BpiI	GAAGAC	2 cut(s)	174, 558
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 463, 495
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	469
BsaHI	GRCGYC	2 cut(s)	99, 171
BsaJI	CCNNGG	2 cut(s)	37, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	39, 287
BseDI	CCNNGG	2 cut(s)	37, 192
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	4 cut(s)	165, 243, 249, 477
BseRI	GAGGAG	2 cut(s)	106, 166
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	446, 637
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	178, 466
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	446, 637
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	34, 61, 204
BspANI	GGCC	2 cut(s)	446, 637
BspCNI	CTCAG	4 cut(s)	164, 242, 248, 478
BspLI	GGNNCC	3 cut(s)	32, 100, 328
BspMAI	CTGCAG	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	37, 192
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	2 cut(s)	99, 171
Bst2UI	CCWGG	2 cut(s)	39, 287
Bst4CI	ACNGT	2 cut(s)	357, 530
Bst6I	CTCTTC	4 cut(s)	37, 124, 435, 641
BstACI	GRCGYC	2 cut(s)	99, 171
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	151, 229, 235, 486
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	178, 466
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	414, 452, 569
BstNI	CCWGG	2 cut(s)	39, 287
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	37, 285
BstSFI	CTRYAG	2 cut(s)	70, 360
BstV2I	GAAGAC	2 cut(s)	174, 558
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu36I	CCTNAGG	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	446, 637
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	1 cut(s)	476
CviJI	RGCY	8 cut(s)	33, 201, 233, 446, 511, 518, 596, 637
CviKI_1	RGCY	8 cut(s)	33, 201, 233, 446, 511, 518, 596, 637
DdeI	CTNAG	4 cut(s)	151, 229, 235, 486
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	4 cut(s)	37, 124, 435, 641
EarI	CTCTTC	4 cut(s)	37, 124, 435, 641
EciI	GGCGGA	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	37, 285
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	479
FaiI	YATR	7 cut(s)	72, 186, 378, 415, 477, 568, 570
FatI	CATG	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	34, 62
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	34, 62
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	34, 62
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	446, 637
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	99, 171
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	66, 131, 305, 350, 576
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	148, 223, 617
Hpy188I	TCNGA	6 cut(s)	130, 136, 154, 310, 462, 487
Hpy188III	TCNNGA	2 cut(s)	180, 317
Hpy8I	GTNNAC	3 cut(s)	148, 223, 617
HpyAV	CCTTC	3 cut(s)	257, 497, 627
HpyCH4III	ACNGT	2 cut(s)	357, 530
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	362, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	414, 452, 569
HpyF3I	CTNAG	4 cut(s)	151, 229, 235, 486
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	99, 171
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	1 cut(s)	99
KasI	GGCGCC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	30, 206
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	3 cut(s)	311, 423, 491
Mly113I	GGCGCC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	304
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	39, 287
MvaI	CCWGG	2 cut(s)	39, 287
MwoI	GCNNNNNNNGC	3 cut(s)	414, 452, 569
NarI	GGCGCC	1 cut(s)	99
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	479
NlaIV	GGNNCC	3 cut(s)	32, 100, 328
NspI	RCATGY	1 cut(s)	479
PceI	AGGCCT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	5 cut(s)	66, 131, 305, 350, 576
PkrI	GCNGC	2 cut(s)	35, 63
PluTI	GGCGCC	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	37, 285
PspGI	CCWGG	2 cut(s)	37, 285
PspN4I	GGNNCC	3 cut(s)	32, 100, 328
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	34, 62
Sau3AI	GATC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	39, 287
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	8 cut(s)	174, 203, 230, 241, 288, 328, 508, 520
SexAI	ACCWGGT	1 cut(s)	285
SfcI	CTRYAG	2 cut(s)	70, 360
SfoI	GGCGCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	311, 423, 491
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	3 cut(s)	34, 61, 204
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	37, 285
TaaI	ACNGT	2 cut(s)	357, 530
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	574
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	311, 423, 491
TauI	GCSGC	2 cut(s)	36, 64
TfiI	GAWTC	5 cut(s)	66, 131, 305, 350, 576
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	225, 276, 453, 516, 561
TspRI	CASTG	1 cut(s)	535
VspI	ATTAAT	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.