Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

43956078 .. 43959326

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGCACTTCATCTGTTCCCTGGAGTATTAAGCTTTTGATCAGAGGCAAAATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCGAATCAATCTTCATCTTCTTCTTCGGATTCTGAAATTGAAGCAGAAGCAGAAGCAGAAGCCACTGAAGGCTCCGAATACGATGACGACGATGCAGTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGTTATAAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCAGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGACGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGAGACATGCTCGGTCTGAGAAATTATTGAATGAAGGTAGGTTGAAGACTGTGCTGAACAGTGATGGGAAACTTGATGAAGAAGAAACCCCTGCTTTATATGCTCGAATCCTTGCTTCTTCACAGGCTTTGCCAAGAAAGAAAAGTAAACAAGAGGATAAAAGCAGGCCAAGAAAGAAGAGAATGAGATATGATAATAAGAAATCCAAAGGAAGTTCAGGCAAGAAAAGGCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

252

Amino Acids

28.24

Weight (kDa)

6.86

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	750
AciI	CCGC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	189, 533
AcyI	GRCGYC	2 cut(s)	99, 751
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	7 cut(s)	143, 203, 368, 454, 487, 550, 565
AjnI	CCWGG	2 cut(s)	20, 336
AluBI	AGCT	3 cut(s)	34, 258, 373
AluI	AGCT	3 cut(s)	34, 258, 373
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	2 cut(s)	495, 686
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	572
BccI	CCATC	3 cut(s)	70, 299, 578
BciT130I	CCWGG	2 cut(s)	22, 338
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	22, 338
BmiI	GGNNCC	2 cut(s)	175, 752
BmrFI	CCNGG	2 cut(s)	22, 338
BmsI	GCATC	2 cut(s)	184, 196
BpiI	GAAGAC	1 cut(s)	572
BplI	GAGNNNNNCTC	4 cut(s)	242, 274, 514, 546
BpmI	CTGGAG	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	520
BsaHI	GRCGYC	2 cut(s)	99, 751
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	22, 338
BseDI	CCNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	273, 528
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	220, 223
BseSI	GKGCMC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	497, 688
BshNI	GGYRCC	1 cut(s)	750
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	497, 688
Bsp1286I	GDGCHC	2 cut(s)	8, 508
Bsp143I	GATC	2 cut(s)	39, 415
Bsp1720I	GCTNAGC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	497, 688
BspCNI	CTCAG	2 cut(s)	272, 529
BspLI	GGNNCC	2 cut(s)	175, 752
BspT107I	GGYRCC	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	39, 415
BssNI	GRCGYC	2 cut(s)	99, 751
Bst2UI	CCWGG	2 cut(s)	22, 338
Bst4CI	ACNGT	4 cut(s)	388, 408, 571, 581
Bst6I	CTCTTC	2 cut(s)	486, 692
BstACI	GRCGYC	2 cut(s)	99, 751
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	3 cut(s)	259, 374, 537
BstH2I	RGCGCY	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	2 cut(s)	42, 418
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	2 cut(s)	39, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 465, 503, 620
BstNI	CCWGG	2 cut(s)	22, 338
BstNSI	RCATGY	2 cut(s)	286, 530
BstSCI	CCNGG	2 cut(s)	20, 336
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	497, 688
BtsIMutI	CAGTG	4 cut(s)	165, 384, 404, 586
Cac8I	GCNNGC	1 cut(s)	686
CfoI	GCGC	1 cut(s)	753
CseI	GACGC	1 cut(s)	107
CsiI	ACCWGGT	1 cut(s)	336
CviAII	CATG	3 cut(s)	83, 283, 527
CviJI	RGCY	9 cut(s)	34, 164, 174, 258, 373, 497, 506, 647, 688
CviKI_1	RGCY	9 cut(s)	34, 164, 174, 258, 373, 497, 506, 647, 688
DdeI	CTNAG	3 cut(s)	259, 374, 537
DinI	GGCGCC	1 cut(s)	752
DpnI	GATC	2 cut(s)	41, 417
DpnII	GATC	2 cut(s)	39, 415
Eam1104I	CTCTTC	2 cut(s)	486, 692
EarI	CTCTTC	2 cut(s)	486, 692
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	189, 533
EcoRII	CCWGG	2 cut(s)	20, 336
EcoT38I	GRGCYC	1 cut(s)	508
EgeI	GGCGCC	1 cut(s)	752
EheI	GGCGCC	1 cut(s)	752
FaeI	CATG	3 cut(s)	86, 286, 530
FaiI	YATR	9 cut(s)	84, 243, 284, 429, 466, 528, 619, 621, 711
FatI	CATG	3 cut(s)	82, 282, 526
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	754
HaeIII	GGCC	2 cut(s)	497, 688
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	753
Hin1I	GRCGYC	2 cut(s)	99, 751
Hin1II	CATG	3 cut(s)	86, 286, 530
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	5 cut(s)	66, 106, 131, 401, 627
Hpy166II	GTNNAC	2 cut(s)	280, 668
Hpy188I	TCNGA	7 cut(s)	44, 130, 136, 178, 361, 513, 538
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	2 cut(s)	280, 668
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	164, 548
HpyCH4III	ACNGT	4 cut(s)	388, 408, 571, 581
HpyCH4V	TGCA	2 cut(s)	197, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 465, 503, 620
HpyF3I	CTNAG	3 cut(s)	259, 374, 537
Hsp92I	GRCGYC	2 cut(s)	99, 751
Hsp92II	CATG	3 cut(s)	86, 286, 530
HspAI	GCGC	1 cut(s)	751
KasI	GGCGCC	1 cut(s)	750
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 415
LmnI	GCTCC	1 cut(s)	179
LweI	GCATC	2 cut(s)	184, 196
MabI	ACCWGGT	1 cut(s)	336
MaeI	CTAG	1 cut(s)	471
MalI	GATC	2 cut(s)	41, 417
MboI	GATC	2 cut(s)	39, 415
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	8, 508
MluCI	AATT	5 cut(s)	138, 362, 447, 474, 542
Mly113I	GGCGCC	1 cut(s)	751
MmeI	TCCRAC	2 cut(s)	249, 405
MnlI	CCTC	8 cut(s)	38, 112, 241, 244, 244, 487, 495, 667
MseI	TTAA	2 cut(s)	30, 327
MspR9I	CCNGG	2 cut(s)	22, 338
MvaI	CCWGG	2 cut(s)	22, 338
MwoI	GCNNNNNNNGC	4 cut(s)	255, 465, 503, 620
NarI	GGCGCC	1 cut(s)	751
NdeII	GATC	2 cut(s)	39, 415
NlaIII	CATG	3 cut(s)	86, 286, 530
NlaIV	GGNNCC	2 cut(s)	175, 752
NspI	RCATGY	2 cut(s)	286, 530
PceI	AGGCCT	1 cut(s)	497
PciI	ACATGT	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	66, 106, 131, 401, 627
PkrI	GCNGC	1 cut(s)	63
PluTI	GGCGCC	1 cut(s)	754
PscI	ACATGT	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	20, 336
PspGI	CCWGG	2 cut(s)	20, 336
PspN4I	GGNNCC	2 cut(s)	175, 752
PsrI	GAACNNNNNNTAC	2 cut(s)	340, 372
PsuI	RGATCY	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	30, 327
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	39, 415
ScrFI	CCNGG	2 cut(s)	22, 338
SduI	GDGCHC	2 cut(s)	8, 508
SetI	ASST	8 cut(s)	36, 220, 260, 292, 342, 375, 559, 563
SexAI	ACCWGGT	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	184, 196
SfoI	GGCGCC	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	5 cut(s)	138, 362, 447, 474, 542
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	61
SspDI	GGCGCC	1 cut(s)	750
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	20, 336
TaaI	ACNGT	4 cut(s)	388, 408, 571, 581
TaqI	TCGA	2 cut(s)	104, 625
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	138, 362, 447, 474, 542
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	5 cut(s)	66, 106, 131, 401, 627
Tru1I	TTAA	2 cut(s)	30, 327
Tru9I	TTAA	2 cut(s)	30, 327
TscAI	CASTG	4 cut(s)	172, 391, 411, 586
TspDTI	ATGAA	6 cut(s)	105, 282, 327, 504, 567, 612
TspRI	CASTG	4 cut(s)	172, 391, 411, 586
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	286, 530
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.