Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

23980439 .. 23983084

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGTAGGTCAATTACGTCAGAAAACATCGCGCCGCGTCCTCCTTACTGTTTCCTCTCTCCCTCTCGCTCTTTGTTTGTTTGTTTGTTTGTGTTAAACTTGGGAGAAGGCAGGATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGACGACGCCTCGAATCAATCTTCATCTTCTTCGGATTCTGAAATAGAAGCAGAAGCAGAAGCCACTGAAGGATCCGAATACGATGACGACGATGCAGTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGATATGAAAGCGAGGATAGCCCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCAGTAGATGATAGAAATGAAAGAGAAAGTCTTAAAGACGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGAGACATGCTCGGTCTGAGAAATTATTGAATGAAGGTAGGTTGAAGACTGTGCTGAACAGTGATGGGAAACTTGATGAAGAAGAAACCCCTGCTTTATATGCTCGAATCCTTGCTTCTTCACAGGCTTTGCCAAGAAAGAAAAGTAAACAAGAGGATAAAAGCTGGCCAAGAAAGAAGAGAATGAGATATGATAATAAGAAATCCAAAGGAAGTTCAGGCAAGAAAAGGCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

270

Amino Acids

30.5

Weight (kDa)

6.09

Isoelectric Point (pI)

68.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	804
AccII	CGCG	2 cut(s)	32, 37
AciI	CCGC	2 cut(s)	35, 124
AclWI	GGATC	2 cut(s)	222, 235
AcoI	YGGCCR	1 cut(s)	740
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	2 cut(s)	243, 587
AcyI	GRCGYC	2 cut(s)	162, 805
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	6 cut(s)	257, 422, 508, 541, 604, 619
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	427, 738
AluI	AGCT	2 cut(s)	427, 738
Alw26I	GTCTC	2 cut(s)	150, 571
AlwI	GGATC	2 cut(s)	222, 235
AoxI	GGCC	2 cut(s)	549, 740
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspLEI	GCGC	2 cut(s)	34, 807
BalI	TGGCCA	1 cut(s)	742
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	626
BccI	CCATC	2 cut(s)	133, 632
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	150, 571
BfaI	CTAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	808
BglI	GCCNNNNNGGC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	35, 125
BlsI	GCNGC	2 cut(s)	36, 126
Bme1390I	CCNGG	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	229, 806
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	238, 250
BpiI	GAAGAC	1 cut(s)	626
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpuEI	CTTGAG	1 cut(s)	574
BsaHI	GRCGYC	2 cut(s)	162, 805
Bse1I	ACTGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	2 cut(s)	274, 277
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	532
Bsh1236I	CGCG	2 cut(s)	32, 37
BshFI	GGCC	2 cut(s)	551, 742
BshNI	GGYRCC	1 cut(s)	804
BsmAI	GTCTC	2 cut(s)	150, 571
BsmBI	CGTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	551, 742
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	2 cut(s)	227, 469
BspACI	CCGC	2 cut(s)	35, 124
BspANI	GGCC	2 cut(s)	551, 742
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	32, 37
BspLI	GGNNCC	2 cut(s)	229, 806
BspPI	GGATC	2 cut(s)	222, 235
BspT107I	GGYRCC	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	227, 469
BssNI	GRCGYC	2 cut(s)	162, 805
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	5 cut(s)	50, 442, 462, 625, 635
Bst6I	CTCTTC	2 cut(s)	540, 746
BstACI	GRCGYC	2 cut(s)	162, 805
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	2 cut(s)	428, 591
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	32, 37
BstH2I	RGCGCY	1 cut(s)	808
BstHHI	GCGC	2 cut(s)	34, 807
BstKTI	GATC	2 cut(s)	230, 472
BstMAI	GTCTC	2 cut(s)	150, 571
BstMBI	GATC	2 cut(s)	227, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	309, 519, 557, 674
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	340, 584
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	32, 37
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	2 cut(s)	227, 469
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	2 cut(s)	227, 469
BsuRI	GGCC	2 cut(s)	551, 742
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	4 cut(s)	219, 438, 458, 640
Cac8I	GCNNGC	1 cut(s)	740
CfoI	GCGC	2 cut(s)	34, 807
CseI	GACGC	2 cut(s)	26, 170
CsiI	ACCWGGT	1 cut(s)	390
CviAII	CATG	3 cut(s)	146, 337, 581
CviJI	RGCY	8 cut(s)	218, 312, 427, 551, 560, 701, 738, 742
CviKI_1	RGCY	8 cut(s)	218, 312, 427, 551, 560, 701, 738, 742
DdeI	CTNAG	2 cut(s)	428, 591
DinI	GGCGCC	1 cut(s)	806
DpnI	GATC	2 cut(s)	229, 471
DpnII	GATC	2 cut(s)	227, 469
EaeI	YGGCCR	1 cut(s)	740
Eam1104I	CTCTTC	2 cut(s)	540, 746
EarI	CTCTTC	2 cut(s)	540, 746
Eco147I	AGGCCT	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	243, 587
EcoRII	CCWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	562
EgeI	GGCGCC	1 cut(s)	806
EheI	GGCGCC	1 cut(s)	806
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	149, 340, 584
FaiI	YATR	9 cut(s)	147, 297, 338, 483, 520, 582, 673, 675, 765
FatI	CATG	3 cut(s)	145, 336, 580
Fnu4HI	GCNGC	2 cut(s)	35, 125
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	35, 125
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	2 cut(s)	33, 806
GluI	GCNGC	2 cut(s)	35, 125
GsaI	CCCAGC	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	808
HaeIII	GGCC	2 cut(s)	551, 742
HgaI	GACGC	2 cut(s)	26, 170
HhaI	GCGC	2 cut(s)	34, 807
Hin1I	GRCGYC	2 cut(s)	162, 805
Hin1II	CATG	3 cut(s)	149, 340, 584
Hin6I	GCGC	2 cut(s)	32, 805
HinP1I	GCGC	2 cut(s)	32, 805
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	5 cut(s)	129, 169, 191, 455, 681
Hpy166II	GTNNAC	2 cut(s)	334, 722
Hpy188I	TCNGA	7 cut(s)	22, 190, 196, 232, 415, 567, 592
Hpy188III	TCNNGA	2 cut(s)	291, 422
Hpy8I	GTNNAC	2 cut(s)	334, 722
Hpy99I	CGWCG	2 cut(s)	164, 248
HpyAV	CCTTC	3 cut(s)	101, 218, 602
HpyCH4III	ACNGT	5 cut(s)	50, 442, 462, 625, 635
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	251, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	309, 519, 557, 674
HpyF3I	CTNAG	2 cut(s)	428, 591
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	2 cut(s)	162, 805
Hsp92II	CATG	3 cut(s)	149, 340, 584
HspAI	GCGC	2 cut(s)	32, 805
KasI	GGCGCC	1 cut(s)	804
Kzo9I	GATC	2 cut(s)	227, 469
LweI	GCATC	2 cut(s)	238, 250
MabI	ACCWGGT	1 cut(s)	390
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	1 cut(s)	17
MalI	GATC	2 cut(s)	229, 471
MboI	GATC	2 cut(s)	227, 469
MflI	RGATCY	2 cut(s)	227, 469
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	742
MluCI	AATT	5 cut(s)	12, 416, 501, 528, 596
MluNI	TGGCCA	1 cut(s)	742
Mly113I	GGCGCC	1 cut(s)	805
MmeI	TCCRAC	2 cut(s)	303, 459
Mox20I	TGGCCA	1 cut(s)	742
MscI	TGGCCA	1 cut(s)	742
MseI	TTAA	2 cut(s)	95, 381
Msp20I	TGGCCA	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	2 cut(s)	32, 37
MwoI	GCNNNNNNNGC	4 cut(s)	309, 519, 557, 674
NarI	GGCGCC	1 cut(s)	805
NdeII	GATC	2 cut(s)	227, 469
NlaIII	CATG	3 cut(s)	149, 340, 584
NlaIV	GGNNCC	2 cut(s)	229, 806
NspI	RCATGY	2 cut(s)	340, 584
PceI	AGGCCT	1 cut(s)	551
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	5 cut(s)	129, 169, 191, 455, 681
PkrI	GCNGC	2 cut(s)	36, 126
PluTI	GGCGCC	1 cut(s)	808
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	229, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	394, 426
PsuI	RGATCY	2 cut(s)	227, 469
SaqAI	TTAA	2 cut(s)	95, 381
SatI	GCNGC	2 cut(s)	35, 125
Sau3AI	GATC	2 cut(s)	227, 469
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	9 cut(s)	11, 20, 274, 346, 396, 429, 613, 617, 740
SexAI	ACCWGGT	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	238, 250
SfoI	GGCGCC	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	5 cut(s)	12, 416, 501, 528, 596
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	2 cut(s)	35, 124
SspDI	GGCGCC	1 cut(s)	804
SspMI	CTAG	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	50, 442, 462, 625, 635
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	167, 679
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	5 cut(s)	12, 416, 501, 528, 596
TauI	GCSGC	2 cut(s)	37, 127
TfiI	GAWTC	5 cut(s)	129, 169, 191, 455, 681
Tru1I	TTAA	2 cut(s)	95, 381
Tru9I	TTAA	2 cut(s)	95, 381
TscAI	CASTG	4 cut(s)	226, 445, 465, 640
TspDTI	ATGAA	7 cut(s)	168, 312, 336, 381, 558, 621, 666
TspRI	CASTG	4 cut(s)	226, 445, 465, 640
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	2 cut(s)	340, 584
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.