Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00149

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

56412 .. 58740

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCGAATCAATCTTCTTCTTCTTCTTCGGATTCTGAAATTGAAGCAGAAGCAGAAGCAGAAGCCACTGAGGGCTCCGAATACGATGAAGACGATGCAGTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGATATCAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCGGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGATGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGAGACATGCTCGGTCTGAGAAATTATTGAATGAAGGTAGGTTGAAGACTGTGCTGAACAGTGATGGGAAACTTGATGAAGAAGAAACCCCTGCTTTATATGCTCGAATCCTTGCTTCTTCACAGGCTTTGCCAAGAAAGAAAAGTAAACAAGAGGATAAAAGCAGGCCAAGAAAGAAGAGAATGAGATATGATAATAAGAAATCCAAAGGAAGTTCAGGCAAGAAAAGGCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

235

Amino Acids

26.4

Weight (kDa)

5.67

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	699
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	2 cut(s)	48, 700
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	7 cut(s)	92, 152, 317, 403, 436, 499, 514
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	207, 322
AluI	AGCT	2 cut(s)	207, 322
Alw26I	GTCTC	1 cut(s)	466
AoxI	GGCC	2 cut(s)	444, 635
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	699
BanII	GRGCYC	2 cut(s)	125, 457
BbsI	GAAGAC	2 cut(s)	144, 521
BccI	CCATC	3 cut(s)	19, 248, 527
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	452
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	124, 701
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	133, 145
BpiI	GAAGAC	2 cut(s)	144, 521
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 463, 495
Bpu1102I	GCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	469
BsaHI	GRCGYC	2 cut(s)	48, 700
BsaWI	WCCGGW	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	287
BseMII	CTCAG	3 cut(s)	108, 222, 477
BseRI	GAGGAG	2 cut(s)	169, 172
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	446, 637
BshNI	GGYRCC	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	446, 637
Bsp1286I	GDGCHC	2 cut(s)	125, 457
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	446, 637
BspCNI	CTCAG	3 cut(s)	109, 221, 478
BspLI	GGNNCC	2 cut(s)	124, 701
BspT107I	GGYRCC	1 cut(s)	699
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	2 cut(s)	48, 700
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	4 cut(s)	337, 357, 520, 530
Bst6I	CTCTTC	2 cut(s)	435, 641
BstACI	GRCGYC	2 cut(s)	48, 700
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	4 cut(s)	117, 208, 323, 486
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 414, 452, 569
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	235, 479
BstSCI	CCNGG	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	144, 521
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	446, 637
BtsIMutI	CAGTG	4 cut(s)	114, 333, 353, 535
Cac8I	GCNNGC	1 cut(s)	635
CfoI	GCGC	1 cut(s)	702
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	3 cut(s)	32, 232, 476
CviJI	RGCY	8 cut(s)	113, 123, 207, 322, 446, 455, 596, 637
CviKI_1	RGCY	8 cut(s)	113, 123, 207, 322, 446, 455, 596, 637
DdeI	CTNAG	4 cut(s)	117, 208, 323, 486
DinI	GGCGCC	1 cut(s)	701
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	435, 641
EarI	CTCTTC	2 cut(s)	435, 641
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	2 cut(s)	125, 457
Eco32I	GATATC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	125, 457
EgeI	GGCGCC	1 cut(s)	701
EheI	GGCGCC	1 cut(s)	701
FaeI	CATG	3 cut(s)	35, 235, 479
FaiI	YATR	8 cut(s)	33, 233, 378, 415, 477, 568, 570, 660
FatI	CATG	3 cut(s)	31, 231, 475
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	2 cut(s)	125, 457
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	446, 637
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	702
Hin1I	GRCGYC	2 cut(s)	48, 700
Hin1II	CATG	3 cut(s)	35, 235, 479
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	15, 55, 80, 350, 576
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	229, 617
Hpy188I	TCNGA	6 cut(s)	79, 85, 127, 310, 462, 487
Hpy188III	TCNNGA	2 cut(s)	186, 317
Hpy8I	GTNNAC	2 cut(s)	229, 617
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	4 cut(s)	337, 357, 520, 530
HpyCH4V	TGCA	2 cut(s)	146, 408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 414, 452, 569
HpyF3I	CTNAG	4 cut(s)	117, 208, 323, 486
Hsp92I	GRCGYC	2 cut(s)	48, 700
Hsp92II	CATG	3 cut(s)	35, 235, 479
HspAI	GCGC	1 cut(s)	700
KasI	GGCGCC	1 cut(s)	699
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	128
LweI	GCATC	2 cut(s)	133, 145
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	420
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	125, 457
MluCI	AATT	5 cut(s)	87, 311, 396, 423, 491
Mly113I	GGCGCC	1 cut(s)	700
MmeI	TCCRAC	2 cut(s)	198, 354
MnlI	CCTC	8 cut(s)	61, 112, 190, 193, 193, 436, 444, 616
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	204, 414, 452, 569
NarI	GGCGCC	1 cut(s)	700
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	35, 235, 479
NlaIV	GGNNCC	2 cut(s)	124, 701
NspI	RCATGY	2 cut(s)	235, 479
PceI	AGGCCT	1 cut(s)	446
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	15, 55, 80, 350, 576
PkrI	GCNGC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	703
PscI	ACATGT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	124, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	289, 321
PsuI	RGATCY	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	125, 457
SetI	ASST	7 cut(s)	169, 209, 241, 291, 324, 508, 512
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	133, 145
SfoI	GGCGCC	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	5 cut(s)	87, 311, 396, 423, 491
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	1 cut(s)	10
SspDI	GGCGCC	1 cut(s)	699
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	337, 357, 520, 530
TaqI	TCGA	2 cut(s)	53, 574
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	5 cut(s)	87, 311, 396, 423, 491
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	5 cut(s)	15, 55, 80, 350, 576
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	4 cut(s)	121, 340, 360, 535
TspDTI	ATGAA	6 cut(s)	150, 231, 276, 453, 516, 561
TspRI	CASTG	4 cut(s)	121, 340, 360, 535
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	2 cut(s)	235, 479
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.