Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

42233829 .. 42236151

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCGAATCAATCTTCATCTTCTTCTTCGGATTCTGAAATAGAAGCAGAAGCAGAAGCAGAAGCCACTGAAGGCTCCGAATACGATGACGACGATGCAGTTGAAGATGCTGAACAACCTTTTTCGAACTCCTCCTCCTCTGGATATAAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCGGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGACGACCAGGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGCAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGAGACATGCTCGTTCTGAGAAATTATTGAATGAAGGTAGGTTGAAGACTGTGCTGAACAGTGATGGGAAACTTGATCAAGAAGAAACCCCTGCTTTATATGCTCGAATGCTTGCTTCTCCACAGGCTTTGCCAAGAAAGAAAAGTAAACAAGAGGATAAAAGCAGGCCAAGAAAGAAGAGAATGAGATATGATAATAAGAAATCCAAAGGAAGTTCAGGCAAGAAAAGGCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

237

Amino Acids

26.54

Weight (kDa)

6.08

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	702
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	138, 485
AcyI	GRCGYC	2 cut(s)	48, 703
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	6 cut(s)	152, 320, 406, 439, 502, 517
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	2 cut(s)	210, 325
AluI	AGCT	2 cut(s)	210, 325
Alw26I	GTCTC	1 cut(s)	469
AoxI	GGCC	2 cut(s)	447, 638
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspLEI	GCGC	1 cut(s)	705
AsuII	TTCGAA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	524
BccI	CCATC	3 cut(s)	19, 251, 530
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	124, 704
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	133, 145
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 466, 498
Bpu1102I	GCTNAGC	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	472
BsaHI	GRCGYC	2 cut(s)	48, 703
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
BseBI	CCWGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	225, 480
BseRI	GAGGAG	3 cut(s)	169, 172, 175
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	449, 640
BshNI	GGYRCC	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	2 cut(s)	449, 640
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	367, 547
Bsp1720I	GCTNAGC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	449, 640
BspCNI	CTCAG	2 cut(s)	224, 481
BspLI	GGNNCC	2 cut(s)	124, 704
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	702
BssMI	GATC	2 cut(s)	367, 547
BssNI	GRCGYC	2 cut(s)	48, 703
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	340, 360, 523, 533
Bst6I	CTCTTC	2 cut(s)	438, 644
BstACI	GRCGYC	2 cut(s)	48, 703
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	585, 638
BstDEI	CTNAG	3 cut(s)	211, 326, 489
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	2 cut(s)	370, 550
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	367, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 417, 455, 572
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	2 cut(s)	238, 482
BstSCI	CCNGG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	449, 640
BtsIMutI	CAGTG	4 cut(s)	114, 336, 356, 538
Cac8I	GCNNGC	2 cut(s)	585, 638
CfoI	GCGC	1 cut(s)	705
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	3 cut(s)	32, 235, 479
CviJI	RGCY	8 cut(s)	113, 123, 210, 325, 449, 458, 599, 640
CviKI_1	RGCY	8 cut(s)	113, 123, 210, 325, 449, 458, 599, 640
DdeI	CTNAG	3 cut(s)	211, 326, 489
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	2 cut(s)	369, 549
DpnII	GATC	2 cut(s)	367, 547
Eam1104I	CTCTTC	2 cut(s)	438, 644
EarI	CTCTTC	2 cut(s)	438, 644
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	138, 485
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	460
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
FaeI	CATG	3 cut(s)	35, 238, 482
FaiI	YATR	9 cut(s)	33, 195, 236, 381, 418, 480, 571, 573, 663
FatI	CATG	3 cut(s)	31, 234, 478
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	2 cut(s)	449, 640
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	2 cut(s)	48, 703
Hin1II	CATG	3 cut(s)	35, 238, 482
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	4 cut(s)	15, 55, 80, 353
HpaII	CCGG	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	232, 620
Hpy188I	TCNGA	6 cut(s)	79, 85, 127, 313, 465, 490
Hpy188III	TCNNGA	3 cut(s)	189, 320, 551
Hpy8I	GTNNAC	2 cut(s)	232, 620
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	113, 500
HpyCH4III	ACNGT	4 cut(s)	340, 360, 523, 533
HpyCH4V	TGCA	2 cut(s)	146, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 417, 455, 572
HpyF3I	CTNAG	3 cut(s)	211, 326, 489
Hsp92I	GRCGYC	2 cut(s)	48, 703
Hsp92II	CATG	3 cut(s)	35, 238, 482
HspAI	GCGC	1 cut(s)	703
KasI	GGCGCC	1 cut(s)	702
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	367, 547
LmnI	GCTCC	1 cut(s)	128
LweI	GCATC	2 cut(s)	133, 145
MabI	ACCWGGT	1 cut(s)	288
MaeI	CTAG	1 cut(s)	423
MalI	GATC	2 cut(s)	369, 549
MboI	GATC	2 cut(s)	367, 547
MboII	GAAGA	9 cut(s)	54, 60, 63, 66, 164, 455, 529, 566, 661
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	314, 399, 426, 494
Mly113I	GGCGCC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	61, 190, 193, 196, 196, 439, 447, 619
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	207, 417, 455, 572
NarI	GGCGCC	1 cut(s)	703
NdeII	GATC	2 cut(s)	367, 547
NlaIII	CATG	3 cut(s)	35, 238, 482
NlaIV	GGNNCC	2 cut(s)	124, 704
NspI	RCATGY	2 cut(s)	238, 482
NspV	TTCGAA	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	449
PciI	ACATGT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	15, 55, 80, 353
PkrI	GCNGC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	706
PscI	ACATGT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	124, 704
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	367, 547
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	7 cut(s)	169, 212, 244, 294, 327, 511, 515
SexAI	ACCWGGT	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	133, 145
SfoI	GGCGCC	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	314, 399, 426, 494
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	1 cut(s)	10
SspDI	GGCGCC	1 cut(s)	702
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	4 cut(s)	340, 360, 523, 533
TaqI	TCGA	3 cut(s)	53, 173, 577
TasI	AATT	4 cut(s)	314, 399, 426, 494
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	15, 55, 80, 353
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	4 cut(s)	121, 343, 363, 538
TspDTI	ATGAA	5 cut(s)	54, 234, 279, 456, 519
TspRI	CASTG	4 cut(s)	121, 343, 363, 538
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	238, 482
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.