Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

33020210 .. 33023056

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1258200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATAAAGCGGCGATTCTACAAGCTAGAACATGGCGACAGAGATGGCCCCTCCAATTCATCTTCATCCTCGTCGGATTCTGAAATGGAACCACAAGCCACAGACGACTCGGATGAAGAAGAAGAAGAAGAATATGATGCAGTCCAAGAACTCAAGGACGATGCTCAGTCCTGCTCTACCTCTTCTGGATATCAAAGTGAGGATAGCTCAGCGACTGAAGTTCCTGTTGATTCGTCAGGTCTACCAATAACTGAAGATGATGATGCTTCAACCGGACATGAAAGACCGGCTCTTATGGTCGATCAGTTGCTTATTAAAAGTGGTTCAAAATTACCAGAGGAAGAATCTAAAATCATGCCAGACGAGGAGTCAATACCAGTAGATTTACCAGACTGTATCGTGAAATGCAAATCAGCTTTTAAATGCAGGTTATGCCCTAGAATTGTCTGTTTGAATGAGGAGAGTTTAAGGGCTCATCTGAAATCCAAGAGACATGCTCGGTCTGAGAAACTATTGGACGAAGGTAGGCTGAAGACCATACTGAACGCTGATGGGAAAATTGATGAAGAAGAGACCCCTGCTTTATATGCTAAAATTCTAGCTAATTCACAGGGTATGCCGAGAAAGAAAAGTAAAAGACAAGACAAGAATGGGTCGAAAAAGAAGGACGAGATATGGTGGGAAGCAATCCAAAGGGAACCCGTCCAAGAGAAGGCGTGGATAAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

244

Amino Acids

27.32

Weight (kDa)

4.82

Isoelectric Point (pI)

70.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	241
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	594
AcuI	CTGAAG	3 cut(s)	237, 273, 551
AfiI	CCNNNNNNNGG	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	270, 327, 454
AhdI	GACNNNNNGTC	1 cut(s)	367
AluBI	AGCT	4 cut(s)	25, 207, 416, 602
AluI	AGCT	4 cut(s)	25, 207, 416, 602
Alw26I	GTCTC	2 cut(s)	484, 566
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	539
BccI	CCATC	2 cut(s)	38, 545
BcoDI	GTCTC	2 cut(s)	484, 566
BfaI	CTAG	3 cut(s)	26, 438, 599
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	12
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	49, 90, 699
BmsI	GCATC	3 cut(s)	127, 151, 253
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 481, 513
Bpu1102I	GCTNAGC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	65, 118
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMII	CTCAG	3 cut(s)	179, 222, 495
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	380, 473
BshFI	GGCC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	273, 287
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	2 cut(s)	484, 566
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	301
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	178, 221, 496
BspLI	GGNNCC	3 cut(s)	49, 90, 699
BspMI	ACCTGC	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	187, 564
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	165, 208, 504
BstF5I	GGATG	2 cut(s)	65, 118
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	484, 566
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 587
BstNSI	RCATGY	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	65, 118
BveI	ACCTGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	4 cut(s)	32, 278, 355, 494
CviJI	RGCY	9 cut(s)	25, 48, 98, 207, 290, 416, 473, 529, 602
CviKI_1	RGCY	9 cut(s)	25, 48, 98, 207, 290, 416, 473, 529, 602
DdeI	CTNAG	3 cut(s)	165, 208, 504
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraI	TTTAAA	1 cut(s)	421
DriI	GACNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	187, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	367
EarI	CTCTTC	2 cut(s)	187, 564
Eco24I	GRGCYC	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	191
Eco57I	CTGAAG	3 cut(s)	237, 273, 551
EcoRV	GATATC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	4 cut(s)	35, 281, 358, 497
FatI	CATG	4 cut(s)	31, 277, 354, 493
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	52, 125
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	3 cut(s)	26, 438, 599
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	273, 287
Hin1II	CATG	4 cut(s)	35, 281, 358, 497
HinfI	GANTC	6 cut(s)	15, 77, 107, 230, 344, 368
HpaII	CCGG	2 cut(s)	273, 287
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	5 cut(s)	76, 82, 112, 480, 505
Hpy188III	TCNNGA	2 cut(s)	186, 400
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	515, 658, 706
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4V	TGCA	3 cut(s)	140, 408, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 587
HpyF3I	CTNAG	3 cut(s)	165, 208, 504
Hsp92II	CATG	4 cut(s)	35, 281, 358, 497
Kzo9I	GATC	1 cut(s)	301
LweI	GCATC	3 cut(s)	127, 151, 253
MaeI	CTAG	3 cut(s)	26, 438, 599
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	6 cut(s)	55, 329, 441, 558, 594, 604
MlyI	GAGTC	2 cut(s)	101, 377
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	61, 79, 190, 193, 331, 358, 451
MseI	TTAA	3 cut(s)	315, 420, 467
MspI	CCGG	2 cut(s)	273, 287
MwoI	GCNNNNNNNGC	2 cut(s)	432, 587
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	35, 281, 358, 497
NlaIV	GGNNCC	3 cut(s)	49, 90, 699
NmeAIII	GCCGAG	1 cut(s)	645
NspI	RCATGY	1 cut(s)	497
PfeI	GAWTC	4 cut(s)	15, 77, 230, 344
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	101, 376
PpsI	GAGTC	2 cut(s)	101, 376
PspN4I	GGNNCC	3 cut(s)	49, 90, 699
PspPI	GGNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	315, 420, 467
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	101, 377
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	8 cut(s)	27, 182, 209, 241, 418, 431, 526, 604
SfaNI	GCATC	3 cut(s)	127, 151, 253
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	6 cut(s)	55, 329, 441, 558, 594, 604
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	26, 438, 599
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	2 cut(s)	300, 656
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	6 cut(s)	55, 329, 441, 558, 594, 604
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	15, 77, 230, 344
Tru1I	TTAA	3 cut(s)	315, 420, 467
Tru9I	TTAA	3 cut(s)	315, 420, 467
TspDTI	ATGAA	5 cut(s)	48, 54, 129, 294, 579
XapI	RAATTY	1 cut(s)	594
XceI	RCATGY	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	3 cut(s)	26, 438, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.