Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

16404629 .. 16408196

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G150100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATAAAGCGGCGATTCTACAAGCTAGAACATGGCGACAGAGATGGTCCCTCGAATTCATCTTCATCCTCCTCGGATTCTGAAATAGAACCAGAAGCCATAGAGGACTCAGATGATGATGATGATGTGGTTGAAGAACTCGAGGAGGATGCTCAGGCTTGCTCTACCTCCTCTGGATATCAAAGTGAGGATAGCTCAGCAAATGAAGTTCCTGATGACTCGTTAGATCTGCCAATCTATGAAGATGATGCTAAAACCGGAAATGAAAGACAAGTTCCTTTGGCCAATCAGTTGTTTGGTAAAAGTGGTTCGGAAATACTAGAGGAACAATCTAACATCGTGGCCAACGAGGAATCTTTACCAGTTGATTTCCCAGACTGCGTTGTCAAATGCAAATCAGCTTTTAAATGCAGGATATGCCCTAGAGTTGTCTGTTTGAATGAGGAGACTTTAAGGGCTCATTTGAAATCCAAGAGACATGCTCGGTCTGAGAAATTATTGGACGAAGGTAGGTTGAAGACCATGCTGAACACTGATGGGAAAATTGAAGAAGAGGAGACCCCTGCTTTATATGCTAGAATTTTAGCTAATTCGCAGGGTATGCCGAGAAAGAAAAGTAAAAGAGAAGAGAAGAAGGTGTCAAGAAAGAAGAGAATGAGATATGGTGCTAAGAAATCCAAAGAGAACCCAGCCAAGAGAAGTCGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

237

Amino Acids

26.6

Weight (kDa)

5.31

Isoelectric Point (pI)

76.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AciI	CCGC	1 cut(s)	10
AcoI	YGGCCR	2 cut(s)	282, 342
AcsI	RAATTY	2 cut(s)	55, 579
AgsI	TTSAA	5 cut(s)	134, 439, 466, 517, 548
AluBI	AGCT	4 cut(s)	25, 195, 401, 587
AluI	AGCT	4 cut(s)	25, 195, 401, 587
Alw26I	GTCTC	3 cut(s)	440, 469, 551
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	282, 342
ApoI	RAATTY	2 cut(s)	55, 579
AspS9I	GGNCC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	2 cut(s)	284, 344
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	524
BccI	CCATC	2 cut(s)	38, 530
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcoDI	GTCTC	3 cut(s)	440, 469, 551
BfaI	CTAG	4 cut(s)	26, 320, 423, 576
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	139, 238
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	4 cut(s)	179, 211, 466, 498
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	65, 154
BseMII	CTCAG	4 cut(s)	123, 167, 210, 480
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	5 cut(s)	61, 158, 160, 458, 569
BseYI	CCCAGC	1 cut(s)	688
BshFI	GGCC	2 cut(s)	284, 344
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	3 cut(s)	440, 469, 551
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	284, 344
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	284, 344
BspCNI	CTCAG	4 cut(s)	122, 166, 209, 481
BspLI	GGNNCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	226
Bst6I	CTCTTC	3 cut(s)	546, 621, 644
BstAPI	GCANNNNNTGC	2 cut(s)	417, 601
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	109, 153, 196, 489, 669
BstF5I	GGATG	2 cut(s)	65, 154
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	3 cut(s)	440, 469, 551
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 572, 601
BstNSI	RCATGY	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	284, 344
BtsCI	GGATG	2 cut(s)	65, 154
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	3 cut(s)	32, 479, 523
DdeI	CTNAG	5 cut(s)	109, 153, 196, 489, 669
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DraI	TTTAAA	1 cut(s)	406
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	282, 342
Eam1104I	CTCTTC	3 cut(s)	546, 621, 644
EarI	CTCTTC	3 cut(s)	546, 621, 644
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	551
Eco32I	GATATC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	460
FaeI	CATG	3 cut(s)	35, 482, 526
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	31, 478, 522
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	52, 161
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	4 cut(s)	26, 320, 423, 576
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	692
HaeIII	GGCC	2 cut(s)	284, 344
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	3 cut(s)	35, 482, 526
HinfI	GANTC	5 cut(s)	15, 77, 107, 218, 353
HpaII	CCGG	1 cut(s)	258
Hpy188I	TCNGA	5 cut(s)	76, 82, 112, 313, 490
Hpy188III	TCNNGA	3 cut(s)	174, 212, 642
HpyAV	CCTTC	2 cut(s)	500, 628
HpyCH4V	TGCA	2 cut(s)	393, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 572, 601
HpyF3I	CTNAG	5 cut(s)	109, 153, 196, 489, 669
Hsp92II	CATG	3 cut(s)	35, 482, 526
Kzo9I	GATC	1 cut(s)	226
LweI	GCATC	2 cut(s)	139, 238
MaeI	CTAG	4 cut(s)	26, 320, 423, 576
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	9 cut(s)	54, 146, 254, 529, 560, 563, 638, 643, 661
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	2 cut(s)	284, 344
MluCI	AATT	5 cut(s)	55, 494, 543, 579, 589
MluNI	TGGCCA	2 cut(s)	284, 344
MlyI	GAGTC	2 cut(s)	101, 212
Mox20I	TGGCCA	2 cut(s)	284, 344
MscI	TGGCCA	2 cut(s)	284, 344
MseI	TTAA	2 cut(s)	405, 452
Msp20I	TGGCCA	2 cut(s)	284, 344
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	417, 572, 601
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	35, 482, 526
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	630
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	15, 77, 353
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	101, 212
PpsI	GAGTC	2 cut(s)	101, 212
PspFI	CCCAGC	1 cut(s)	688
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	140
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	405, 452
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	101, 212
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	8 cut(s)	27, 170, 197, 403, 511, 515, 589, 639
SfaNI	GCATC	2 cut(s)	139, 238
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	55, 494, 543, 579, 589
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	4 cut(s)	26, 320, 423, 576
TaqI	TCGA	2 cut(s)	53, 141
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	5 cut(s)	55, 494, 543, 579, 589
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	15, 77, 353
Tru1I	TTAA	2 cut(s)	405, 452
Tru9I	TTAA	2 cut(s)	405, 452
TscAI	CASTG	1 cut(s)	538
TspDTI	ATGAA	5 cut(s)	48, 54, 219, 255, 279
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	55, 579
XceI	RCATGY	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	4 cut(s)	26, 320, 423, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.