Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Forward (+)

44019278 .. 44021570

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029715

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGATAAAGCGGCGATTCTACAAGATGGAACATGGCGACAGAGATGACGCCTCAAATCAATCTTCATCTTCTTCAGATTCTGAAATAGAAGCAGAAGCAGAAGCCACTGAAGGCTCCGAATACGATGACGACGATGCATTTGAAGATGCTGAACAACCTTGTTCCAACTCCTCCTCTGGATATCAAAGCGAGGATAGCTCAGCAAATGAAACCCTTGTTGACATGTCAGGTTGTCCAGTAGATGATGGAAATGAAAGAGAAAGTCTTAAAGACGACCAAGTGTTTGGTAAAAGTGGTTCAGAATTTCAAGAGCTAAGTTCCAACACTGTTGCTGACAAGGAATCACTGTCAGTAGATCTCCCAGAGTATGTTGTGAAACGTAAATCAATTTTCAAGTGCAGGATATGCCCTAGAATTGTTTGTTTGAATGAAGAGGCCTTGAGGGCTCATCTGAAGTCCAAGAGACATGCTCGGTCTGAGAAATTATTGAATGAAGGTAGGTTGAAGACTGTGCTGAACAGTGATGGGAAACTTGATGAAGAAGAAACCCCTGCTTTATATGCTCGAATCCTTGCTTCTTCACAGGCTTTGCTAAGAAAGAAAAGTAAACAAGAGGATAAAAGCAGGCCAAGAAAGAAGAGAATGAGATATGATAATAAGAAATCCAAAGGAAGTTCAGGCAAGAAAAGGCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

233

Amino Acids

26.16

Weight (kDa)

5.84

Isoelectric Point (pI)

66.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	690
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	3 cut(s)	57, 129, 473
AcyI	GRCGYC	2 cut(s)	48, 691
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	6 cut(s)	143, 308, 394, 427, 490, 505
AluBI	AGCT	2 cut(s)	198, 313
AluI	AGCT	2 cut(s)	198, 313
Alw26I	GTCTC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	435, 626
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	4 cut(s)	122, 154, 266, 298
AspLEI	GCGC	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	512
BccI	CCATC	3 cut(s)	19, 239, 518
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	694
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	115, 692
BmsI	GCATC	2 cut(s)	124, 136
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	4 cut(s)	182, 214, 454, 486
Bpu1102I	GCTNAGC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	460
BsaHI	GRCGYC	2 cut(s)	48, 691
Bse1I	ACTGG	1 cut(s)	236
BseMII	CTCAG	2 cut(s)	213, 468
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	2 cut(s)	160, 163
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	437, 628
BshNI	GGYRCC	1 cut(s)	690
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	437, 628
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	355
Bsp1720I	GCTNAGC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	437, 628
BspCNI	CTCAG	2 cut(s)	212, 469
BspLI	GGNNCC	2 cut(s)	115, 692
BspT107I	GGYRCC	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	2 cut(s)	48, 691
Bst4CI	ACNGT	4 cut(s)	328, 348, 511, 521
Bst6I	CTCTTC	2 cut(s)	426, 632
BstACI	GRCGYC	2 cut(s)	48, 691
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	626
BstDEI	CTNAG	4 cut(s)	199, 314, 477, 593
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 405, 443, 560
BstNSI	RCATGY	2 cut(s)	226, 470
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	437, 628
BtsIMutI	CAGTG	4 cut(s)	105, 324, 344, 526
Cac8I	GCNNGC	1 cut(s)	626
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	693
CseI	GACGC	1 cut(s)	56
CviAII	CATG	3 cut(s)	32, 223, 467
CviJI	RGCY	8 cut(s)	104, 114, 198, 313, 437, 446, 587, 628
CviKI_1	RGCY	8 cut(s)	104, 114, 198, 313, 437, 446, 587, 628
DdeI	CTNAG	4 cut(s)	199, 314, 477, 593
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	426, 632
EarI	CTCTTC	2 cut(s)	426, 632
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	182
Eco57I	CTGAAG	3 cut(s)	57, 129, 473
EcoRV	GATATC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
FaeI	CATG	3 cut(s)	35, 226, 470
FaiI	YATR	8 cut(s)	33, 224, 369, 406, 468, 559, 561, 651
FatI	CATG	3 cut(s)	31, 222, 466
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	437, 628
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	2 cut(s)	48, 691
Hin1II	CATG	3 cut(s)	35, 226, 470
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	15, 77, 341, 567
Hpy166II	GTNNAC	2 cut(s)	220, 608
Hpy188I	TCNGA	6 cut(s)	76, 82, 118, 301, 453, 478
Hpy188III	TCNNGA	2 cut(s)	177, 308
Hpy8I	GTNNAC	2 cut(s)	220, 608
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	104, 488
HpyCH4III	ACNGT	4 cut(s)	328, 348, 511, 521
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	137, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 405, 443, 560
HpyF3I	CTNAG	4 cut(s)	199, 314, 477, 593
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	2 cut(s)	48, 691
Hsp92II	CATG	3 cut(s)	35, 226, 470
HspAI	GCGC	1 cut(s)	691
KasI	GGCGCC	1 cut(s)	690
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	162, 213, 249, 375, 385, 564, 569, 610, 663
LweI	GCATC	2 cut(s)	124, 136
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	379
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	4 cut(s)	302, 387, 414, 482
Mly113I	GGCGCC	1 cut(s)	691
MmeI	TCCRAC	2 cut(s)	189, 345
MnlI	CCTC	7 cut(s)	61, 181, 184, 184, 427, 435, 607
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	195, 405, 443, 560
NarI	GGCGCC	1 cut(s)	691
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	35, 226, 470
NlaIV	GGNNCC	2 cut(s)	115, 692
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	2 cut(s)	226, 470
PceI	AGGCCT	1 cut(s)	437
PciI	ACATGT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	15, 77, 341, 567
PkrI	GCNGC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	115, 692
PsrI	GAACNNNNNNTAC	2 cut(s)	280, 312
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	7 cut(s)	160, 200, 232, 315, 382, 499, 503
SfaNI	GCATC	2 cut(s)	124, 136
SfoI	GGCGCC	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	302, 387, 414, 482
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	1 cut(s)	10
SspDI	GGCGCC	1 cut(s)	690
SspMI	CTAG	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	328, 348, 511, 521
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	565
TaqII	GACCGA	1 cut(s)	462
TasI	AATT	4 cut(s)	302, 387, 414, 482
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	15, 77, 341, 567
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	4 cut(s)	112, 331, 351, 526
TspDTI	ATGAA	6 cut(s)	54, 222, 267, 444, 507, 552
TspRI	CASTG	4 cut(s)	112, 331, 351, 526
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	226, 470
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.