Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006812

Physical Location & Seq

Genomic Coordinates Reverse (-)

10126997 .. 10127436

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1054400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTAAAGCGGCGATTCTACAAGCTAGAACACGGCGACAGAGATGGCCCCTCGAATTTGTCTTCATCCTCGTCGGATTCTGAAATAGAACCACACGCCACATACGACTCCGATGAGGAAGAAGAAGAATATGATGCAGTCGAACAACTCAAGGACGATGCTCAATCTTGCTCTACCTCCTCTGGATATCAGAGTGAGGATAGCTCAGCGAATGAAGTTCCTGTTGACTCCTCAGGTAAGGCTATAAGAATTTTTATCGGTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

90

Amino Acids

9.89

Weight (kDa)

4.2

Isoelectric Point (pI)

95.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640 AT1G60640
fragaria_vesca	FvH4_7g05720 FvH4_7g05720
malus_domestica	MD00G1054400.v1.1 MD09G1258200.v1.1
prunus_persica	Prupe.3G150100_v2.0.a1
pyrus_communis	pycom09g17310 pycom17g25520
rosa_chinensis	RchiOBHm_Chr1g0332591
rosa_laevigata	RLG00000029653 RLG00000029715
rosa_multiflora	Rmu_sc0004413.1_g000026
rosa_roxburghii	Rroxscaffold_4G00318120
rosa_rugosa	Rorug01G0105600
rosa_samantha	Rh1AG126600 Rh1BG096300 Rh1CG120400 Rh1DG131000
rosa_wichuraiana	Rw0G003950 Rw1G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcsI	RAATTY	3 cut(s)	55, 249, 263
AluBI	AGCT	2 cut(s)	25, 204
AluI	AGCT	2 cut(s)	25, 204
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	3 cut(s)	55, 249, 263
AspS9I	GGNCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	54
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	124, 148
BpiI	GAAGAC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	219, 246
BseRI	GAGGAG	2 cut(s)	169, 220
BshFI	GGCC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	218, 245
BspLI	GGNNCC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	205, 232
BstF5I	GGATG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	47
CviJI	RGCY	4 cut(s)	25, 48, 204, 242
CviKI_1	RGCY	4 cut(s)	25, 48, 204, 242
DdeI	CTNAG	2 cut(s)	205, 232
Eco32I	GATATC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	188
FaiI	YATR	3 cut(s)	103, 132, 245
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	15, 77, 107, 227
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	4 cut(s)	76, 82, 112, 192
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	205, 232
LpnPI	CCDG	3 cut(s)	168, 219, 234
LweI	GCATC	2 cut(s)	124, 148
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	4 cut(s)	54, 131, 134, 137
MluCI	AATT	3 cut(s)	55, 249, 263
MlyI	GAGTC	2 cut(s)	101, 221
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	61, 79, 109, 187, 190, 190, 241
MseI	TTAA	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	15, 77
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	101, 221
PpsI	GAGTC	2 cut(s)	101, 221
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	101, 221
SetI	ASST	4 cut(s)	27, 179, 206, 238
SfaNI	GCATC	2 cut(s)	124, 148
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	55, 249, 263
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	26
TaqI	TCGA	2 cut(s)	53, 141
TasI	AATT	3 cut(s)	55, 249, 263
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	15, 77
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	54, 228
XapI	RAATTY	3 cut(s)	55, 249, 263
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.