Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

18888252 .. 18897372

Gene Structure 9121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0105600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTAACTGTCACCAAGATCCCAAATTATGTAGCTATTAAAATCGCTCTGGAGCTCAAGAAGCTGCTAATAGACAACAGCCTTCTAGATGTTTCCCAGTCTGATTTGGAAGCTAATCTCTTTAAGCTTATGGAACGAAGGGGTTATGGCGAAGAGTACATAAGTCGTTACAAGATGATGACCAGATTTCATCATCAAAGAGTGCCGTTAGTTATTCTTGTCTGTGGAACTGCTTGTGTCGGGAAGTCAACCATTGCTACCCAACTCGCACAAAGGCTAAATTTGCCCAATGTCTTGCAGACAGATATGGTGTACGAATTACTGCGCACATCAACAGATGCACCATTGACATCTACTCCTGTTTGGGCGCGAGACTTCAGCTCCTCTGAGGAGTTAATTACTGAATTTTGCAGGGAATGCAGGATTGTTCGTAAAGGATTGGCTGGTGATTTGAAGAAAGCAATGAAAGATGGAAAGCCAATAATAATAGAGGGAATACATTTGGATCCAAGCATTTATTTAATGGATGATGAAAATAAAACACGAGCTGATGTGCAAGAGAAAACTCCGGAGGCAAACCATCTTGCAGCAAATGATTCAAAAACACAGATGGGAAATGATTCTCTAATATATACCGAGCATGTCAACTCTGAAGAAGGGACACTAAATAACAAAGTCAACAATGTCTCAGATTACCTGGAAGCTATTAACCTTGCTGGAAGTTTGTCTGATAAAAAAGGTGAAAATCTTAGTGGTGAAGAGACAAACAAAAATTCTCTTGTTAAGAAAGAGAAGTCCGGTCCGGAACCAATAATTATACCTATAGTTCTGAAGATGGCTGAATTTGATCATAAGGCTTTGCTAGAGGAGGAGATCTCAACACGAACATTTAGTGATAAATGTCTAGTCCAGGATAAAGATAAACTAATAAGCAACTTAAAGATCATCCAGGACTATCTTTGCTCATTCAATTCTCAGGGATTGACAGTAGTCAATATATCAGCAACAACATTCCCACAAACATTGGATTGGCTGCATGGATATCTTCTTGAGTGTATTGAGCGTGGTATTTCATCTGTGTCCAACGAAAATAGTAGGCGGCCTGCGGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

371

Amino Acids

41.66

Weight (kDa)

5.55

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	72 - 171	2.9e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AccII	CGCG	1 cut(s)	370
AccIII	TCCGGA	2 cut(s)	568, 802
AciI	CCGC	2 cut(s)	1099, 1106
AclWI	GGATC	3 cut(s)	13, 500, 513
AcsI	RAATTY	4 cut(s)	280, 404, 772, 842
AcuI	CTGAAG	3 cut(s)	361, 672, 851
AfaI	GTAC	2 cut(s)	158, 314
AgsI	TTSAA	3 cut(s)	454, 600, 970
AjnI	CCWGG	3 cut(s)	696, 909, 948
AluBI	AGCT	8 cut(s)	35, 55, 64, 113, 127, 381, 548, 704
AluI	AGCT	8 cut(s)	35, 55, 64, 113, 127, 381, 548, 704
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	3 cut(s)	366, 691, 755
AlwI	GGATC	3 cut(s)	13, 500, 513
Aor13HI	TCCGGA	2 cut(s)	568, 802
AoxI	GGCC	1 cut(s)	1100
ApeKI	GCWGC	3 cut(s)	64, 587, 1033
ApoI	RAATTY	4 cut(s)	280, 404, 772, 842
Asp700I	GAANNNNTTC	1 cut(s)	619
AspLEI	GCGC	2 cut(s)	327, 370
AspS9I	GGNCC	1 cut(s)	800
AsuHPI	GGTGA	4 cut(s)	4, 458, 752, 767
AvaII	GGWCC	1 cut(s)	800
BamHI	GGATCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	51, 599, 1020
BccI	CCATC	4 cut(s)	464, 588, 604, 829
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	698, 911, 950
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	366, 691, 755
BfaI	CTAG	3 cut(s)	86, 863, 905
BfmI	CTRYAG	1 cut(s)	822
BglII	AGATCT	1 cut(s)	873
BisI	GCNGC	4 cut(s)	65, 588, 1034, 1100
BlsI	GCNGC	4 cut(s)	66, 589, 1035, 1101
Bme1390I	CCNGG	3 cut(s)	698, 911, 950
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	2 cut(s)	507, 807
BmrFI	CCNGG	3 cut(s)	698, 911, 950
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	989
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	41, 1070
BsaWI	WCCGGW	3 cut(s)	568, 797, 802
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 365, 370, 395
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	252, 468
BseAI	TCCGGA	2 cut(s)	568, 802
BseBI	CCWGG	3 cut(s)	698, 911, 950
BseGI	GGATG	2 cut(s)	532, 945
BseMI	GCAATG	2 cut(s)	252, 468
BseMII	CTCAG	3 cut(s)	378, 702, 989
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	4 cut(s)	373, 404, 881, 884
BseXI	GCAGC	3 cut(s)	51, 599, 1020
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	1102
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	569, 798, 803
BslFI	GGGAC	1 cut(s)	673
BsmAI	GTCTC	3 cut(s)	366, 691, 755
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	1102
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp13I	TCCGGA	2 cut(s)	568, 802
Bsp143I	GATC	5 cut(s)	18, 505, 847, 873, 942
BspACI	CCGC	2 cut(s)	1099, 1106
BspANI	GGCC	1 cut(s)	1102
BspCNI	CTCAG	3 cut(s)	379, 701, 988
BspEI	TCCGGA	2 cut(s)	568, 802
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	507, 807
BspPI	GGATC	3 cut(s)	13, 500, 513
BsrDI	GCAATG	2 cut(s)	252, 468
BsrI	ACTGG	1 cut(s)	97
BssMI	GATC	5 cut(s)	18, 505, 847, 873, 942
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	3 cut(s)	698, 911, 950
Bst4CI	ACNGT	2 cut(s)	10, 988
Bst6I	CTCTTC	2 cut(s)	147, 753
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	1104
BstDEI	CTNAG	4 cut(s)	387, 688, 749, 975
BstF5I	GGATG	2 cut(s)	532, 945
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	327, 370
BstKTI	GATC	5 cut(s)	21, 508, 850, 876, 945
BstMAI	GTCTC	3 cut(s)	366, 691, 755
BstMBI	GATC	5 cut(s)	18, 505, 847, 873, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 283, 417
BstNI	CCWGG	3 cut(s)	698, 911, 950
BstNSI	RCATGY	1 cut(s)	644
BstPAI	GACNNNNGTC	1 cut(s)	989
BstSCI	CCNGG	3 cut(s)	696, 909, 948
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	51, 599, 1020
BstX2I	RGATCY	3 cut(s)	18, 505, 873
BstYI	RGATCY	3 cut(s)	18, 505, 873
BsuRI	GGCC	1 cut(s)	1102
BtsCI	GGATG	2 cut(s)	532, 945
Cac8I	GCNNGC	1 cut(s)	1104
CfoI	GCGC	2 cut(s)	327, 370
Cfr13I	GGNCC	1 cut(s)	800
CpoI	CGGWCCG	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	157, 313
CspCI	CAANNNNNGTGG	2 cut(s)	1005, 1040
CspI	CGGWCCG	1 cut(s)	800
CviAII	CATG	2 cut(s)	641, 1037
CviQI	GTAC	2 cut(s)	157, 313
DdeI	CTNAG	4 cut(s)	387, 688, 749, 975
DpnI	GATC	5 cut(s)	20, 507, 849, 875, 944
DpnII	GATC	5 cut(s)	18, 505, 847, 873, 942
Eam1104I	CTCTTC	2 cut(s)	147, 753
EarI	CTCTTC	2 cut(s)	147, 753
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	1043
Eco47I	GGWCC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	361, 672, 851
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	696, 909, 948
EcoRV	GATATC	1 cut(s)	1043
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	644, 1040
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	2 cut(s)	640, 1036
FbaI	TGATCA	1 cut(s)	847
Fnu4HI	GCNGC	4 cut(s)	65, 588, 1034, 1100
FokI	GGATG	2 cut(s)	539, 932
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	65, 588, 1034, 1100
FspBI	CTAG	3 cut(s)	86, 863, 905
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	2 cut(s)	326, 369
GluI	GCNGC	4 cut(s)	65, 588, 1034, 1100
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	1102
HapII	CCGG	3 cut(s)	569, 798, 803
HhaI	GCGC	2 cut(s)	327, 370
Hin1II	CATG	2 cut(s)	644, 1040
Hin6I	GCGC	2 cut(s)	325, 368
HinP1I	GCGC	2 cut(s)	325, 368
HincII	GTYRAC	4 cut(s)	6, 249, 646, 679
HindII	GTYRAC	4 cut(s)	6, 249, 646, 679
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	596, 620
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	569, 798, 803
HphI	GGTGA	4 cut(s)	4, 458, 752, 767
Hpy166II	GTNNAC	5 cut(s)	6, 249, 313, 646, 679
Hpy188I	TCNGA	6 cut(s)	103, 388, 652, 691, 730, 831
Hpy188III	TCNNGA	7 cut(s)	50, 58, 86, 241, 569, 803, 1049
Hpy8I	GTNNAC	5 cut(s)	6, 249, 313, 646, 679
HpyAV	CCTTC	3 cut(s)	92, 132, 650
HpyCH4III	ACNGT	2 cut(s)	10, 988
HpyCH4V	TGCA	7 cut(s)	298, 341, 411, 420, 556, 587, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 283, 417
HpyF3I	CTNAG	4 cut(s)	387, 688, 749, 975
Hsp92II	CATG	2 cut(s)	644, 1040
HspAI	GCGC	2 cut(s)	325, 368
Kpn2I	TCCGGA	2 cut(s)	568, 802
Ksp22I	TGATCA	1 cut(s)	847
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	18, 505, 847, 873, 942
LmnI	GCTCC	2 cut(s)	52, 386
Lsp1109I	GCAGC	3 cut(s)	51, 599, 1020
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	86, 863, 905
MaeIII	GTNAC	2 cut(s)	10, 167
MalI	GATC	5 cut(s)	20, 507, 849, 875, 944
MboI	GATC	5 cut(s)	18, 505, 847, 873, 942
MboII	GAAGA	6 cut(s)	164, 466, 665, 770, 844, 1037
MflI	RGATCY	3 cut(s)	18, 505, 873
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	9 cut(s)	25, 280, 317, 396, 404, 772, 813, 842, 970
MmeI	TCCRAC	1 cut(s)	1107
MnlI	CCTC	6 cut(s)	382, 394, 484, 565, 859, 862
MroI	TCCGGA	2 cut(s)	568, 802
MroXI	GAANNNNTTC	1 cut(s)	619
MseI	TTAA	8 cut(s)	5, 39, 123, 395, 521, 708, 783, 938
MspI	CCGG	3 cut(s)	569, 798, 803
MspR9I	CCNGG	3 cut(s)	698, 911, 950
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	3 cut(s)	698, 911, 950
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	61, 283, 417
NdeII	GATC	5 cut(s)	18, 505, 847, 873, 942
NlaIII	CATG	2 cut(s)	644, 1040
NlaIV	GGNNCC	2 cut(s)	507, 807
NmuCI	GTSAC	1 cut(s)	10
NsbI	TGCGCA	1 cut(s)	326
NspI	RCATGY	1 cut(s)	644
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	596, 620
PfoI	TCCNGGA	2 cut(s)	909, 948
PkrI	GCNGC	4 cut(s)	66, 589, 1035, 1101
PshAI	GACNNNNGTC	1 cut(s)	989
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	696, 909, 948
PspGI	CCWGG	3 cut(s)	696, 909, 948
PspN4I	GGNNCC	2 cut(s)	507, 807
PspPI	GGNCC	1 cut(s)	800
PsuI	RGATCY	3 cut(s)	18, 505, 873
RsaI	GTAC	2 cut(s)	158, 314
RsaNI	GTAC	2 cut(s)	157, 313
Rsr2I	CGGWCCG	1 cut(s)	800
RsrII	CGGWCCG	1 cut(s)	800
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	8 cut(s)	5, 39, 123, 395, 521, 708, 783, 938
SatI	GCNGC	4 cut(s)	65, 588, 1034, 1100
Sau3AI	GATC	5 cut(s)	18, 505, 847, 873, 942
Sau96I	GGNCC	1 cut(s)	800
ScrFI	CCNGG	3 cut(s)	698, 911, 950
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	1 cut(s)	800
SmlI	CTYRAG	2 cut(s)	56, 1049
SmoI	CTYRAG	2 cut(s)	56, 1049
Sse9I	AATT	9 cut(s)	25, 280, 317, 396, 404, 772, 813, 842, 970
SsiI	CCGC	2 cut(s)	1099, 1106
SspMI	CTAG	3 cut(s)	86, 863, 905
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	696, 909, 948
TaaI	ACNGT	2 cut(s)	10, 988
TasI	AATT	9 cut(s)	25, 280, 317, 396, 404, 772, 813, 842, 970
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	2 cut(s)	596, 620
Tru1I	TTAA	8 cut(s)	5, 39, 123, 395, 521, 708, 783, 938
Tru9I	TTAA	8 cut(s)	5, 39, 123, 395, 521, 708, 783, 938
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	64, 587, 1033
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	179, 479, 546, 1062
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	4 cut(s)	280, 404, 772, 842
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	3 cut(s)	86, 863, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.