Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

5418530 .. 5420533

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAAATCGTAGAGGATGTTAAACAGATGGAAACTTTCCGAAACAAAAGTCGTTTCTCTCTCCTCCCTCCCGCGCGCGTCTTTGACCAGCGGGGTCGCCGCCTTCGATCGCCGCCGTCCGGCCAAACTGGGCCGTCGCACCGGTATCAAAATGAAGCTCTCCCATCCTCCTTCTTGTTTGGGCTGGAGATCGAGTCCATAACGCTGCCAGGAGAGAGAACCTTCACCAAGAAGCCTCGCCTGCACGTTGAACTTCTTTTGCCGGGATCTCACTCCTCCGGCCACCAATCCGAGAACTCTTTACAAGGTTTTGAAGGTCTTCACTTGTGTATCAAAACCGATTCGCATCAGGCATTATCAGATGAGATCAATTGTAATGTTGATGACATAGTGAGCATTGAGTTGAATATCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGGAATAATGAGTTTATCTTTTCAGGAAGACTCGATAATCTTGCCTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

165

Amino Acids

18.22

Weight (kDa)

6.06

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	116 - 163	8.5e-09	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	74, 76, 78
AciI	CCGC	4 cut(s)	72, 91, 100, 113
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	2 cut(s)	121, 280
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	251, 314, 406
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	158, 429
AluI	AGCT	2 cut(s)	158, 429
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	121, 131, 280
ApeKI	GCWGC	2 cut(s)	205, 429
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	76, 78
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BbsI	GAAGAC	2 cut(s)	311, 475
BbvI	GCAGC	2 cut(s)	192, 416
BccI	CCATC	2 cut(s)	22, 172
BceAI	ACGGC	2 cut(s)	100, 118
BcgI	CGANNNNNNTGC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	264
BisI	GCNGC	4 cut(s)	100, 113, 206, 430
BlsI	GCNGC	4 cut(s)	101, 114, 207, 431
Bme1390I	CCNGG	2 cut(s)	210, 264
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	210, 264
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	2 cut(s)	311, 475
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	2 cut(s)	22, 164
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	133
BsePI	GCGCGC	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	53, 265
BseXI	GCAGC	2 cut(s)	192, 416
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	74, 76, 78
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	123, 133, 282
BshTI	ACCGGT	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	120, 142, 263, 279
BslI	CCNNNNNNNGG	1 cut(s)	119
BsnI	GGCC	3 cut(s)	123, 133, 282
Bsp143I	GATC	4 cut(s)	107, 189, 266, 366
BspACI	CCGC	4 cut(s)	72, 91, 100, 113
BspANI	GGCC	3 cut(s)	123, 133, 282
BspFNI	CGCG	3 cut(s)	74, 76, 78
BspPI	GGATC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	433
BssHII	GCGCGC	1 cut(s)	74
BssMI	GATC	4 cut(s)	107, 189, 266, 366
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	76, 242
BstF5I	GGATG	2 cut(s)	22, 164
BstFNI	CGCG	3 cut(s)	74, 76, 78
BstHHI	GCGC	2 cut(s)	76, 78
BstKTI	GATC	4 cut(s)	110, 192, 269, 369
BstMBI	GATC	4 cut(s)	107, 189, 266, 366
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	208, 262
BstUI	CGCG	3 cut(s)	74, 76, 78
BstV1I	GCAGC	2 cut(s)	192, 416
BstV2I	GAAGAC	2 cut(s)	311, 475
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	123, 133, 282
BtsCI	GGATG	2 cut(s)	22, 164
Cac8I	GCNNGC	2 cut(s)	76, 242
CfoI	GCGC	2 cut(s)	76, 78
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	7 cut(s)	123, 133, 158, 184, 235, 282, 429
CviKI_1	RGCY	7 cut(s)	123, 133, 158, 184, 235, 282, 429
DpnI	GATC	4 cut(s)	109, 191, 268, 368
DpnII	GATC	4 cut(s)	107, 189, 266, 366
EaeI	YGGCCR	2 cut(s)	121, 280
Eco130I	CCWWGG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaiI	YATR	2 cut(s)	200, 389
FauI	CCCGC	2 cut(s)	79, 84
Fnu4HI	GCNGC	4 cut(s)	100, 113, 206, 430
FokI	GGATG	2 cut(s)	29, 151
Fsp4HI	GCNGC	4 cut(s)	100, 113, 206, 430
GlaI	GCGC	2 cut(s)	75, 77
GluI	GCNGC	4 cut(s)	100, 113, 206, 430
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	3 cut(s)	123, 133, 282
HapII	CCGG	4 cut(s)	120, 142, 263, 279
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	76, 78
Hin6I	GCGC	2 cut(s)	74, 76
HinP1I	GCGC	2 cut(s)	74, 76
HinfI	GANTC	3 cut(s)	194, 341, 471
HpaII	CCGG	4 cut(s)	120, 142, 263, 279
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	41, 292, 361
Hpy188III	TCNNGA	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	4 cut(s)	113, 181, 232, 308
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	246
HspAI	GCGC	2 cut(s)	74, 76
Kzo9I	GATC	4 cut(s)	107, 189, 266, 366
Lsp1109I	GCAGC	2 cut(s)	192, 416
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	1 cut(s)	246
MalI	GATC	4 cut(s)	109, 191, 268, 368
MauBI	CGCGCGCG	1 cut(s)	74
MboI	GATC	4 cut(s)	107, 189, 266, 366
MboII	GAAGA	2 cut(s)	311, 480
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	203, 465
MnlI	CCTC	7 cut(s)	7, 74, 78, 178, 246, 286, 431
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	21, 493
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	4 cut(s)	120, 142, 263, 279
MspR9I	CCNGG	2 cut(s)	210, 264
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	3 cut(s)	74, 76, 78
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	107, 189, 266, 366
PauI	GCGCGC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	101, 114, 207, 431
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	2 cut(s)	202, 465
PpsI	GAGTC	2 cut(s)	202, 465
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	266
PteI	GCGCGC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	21, 493
SatI	GCNGC	4 cut(s)	100, 113, 206, 430
Sau3AI	GATC	4 cut(s)	107, 189, 266, 366
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	203, 465
ScrFI	CCNGG	2 cut(s)	210, 264
SetI	ASST	7 cut(s)	160, 224, 249, 310, 319, 431, 442
SfaNI	GCATC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	4 cut(s)	72, 91, 100, 113
StyD4I	CCNGG	2 cut(s)	208, 262
StyI	CCWWGG	1 cut(s)	433
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	106, 192, 474
TasI	AATT	1 cut(s)	370
TauI	GCSGC	2 cut(s)	102, 115
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	21, 493
Tru9I	TTAA	2 cut(s)	21, 493
TseI	GCWGC	2 cut(s)	205, 429
TspDTI	ATGAA	2 cut(s)	17, 168
XmnI	GAANNNNTTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.