Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

19904233 .. 19907353

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21670.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAGCGATAACTCGACTGCAGCAAATGCAATTCCTCCACTCTCCTCTCACCCTCAAGCCTTCCGTACTCTTCCCCAAGCCCTACCCCAACCAACTCCGCCGCTCATGCCCCCGCACTTTCTCCACCGCTCCTATCCTCTGCTCCTCCAACTCCCCTCATCTCCCTCAGAGCTCGGTTTCTGCAGCGGGAGCGAATGCCTCAATCGTTGGGGATCTGCTCGATTATCTCAACGAGTCTTGGACTCACTTTCATGCTACCGCTGAAGCGAAAAGACAGCTAATTGCTACTGGTTTTCAATTGCTGAGTGAGAATGATGAGTGGGACCTGAAGCCTGGTGGACGCTACTTCTTTACACGGAATATGTCTTGTTTGGTTGCATTTGCTGTTGGAGAGAAGTATAGTGTTGGTAATGGTTTCCATGTGATTGCTGCACACACAGACAGTCCGTGTCTAAAATTAAAGCCAAGATCTGCATCATCCAAGTCTGGTTATCAAATGATCAATGTGCAGACATATGGAGGTGGTCTCTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTGATATTGAGAGGCAGCACAGGCTCCTTTTTGCATAAGCTTGTCAAAGTGAAGCGACCTCTGTTACGAATACCGACACTGGCCATTCACCTTGACAGCACAGTAAACAAGGATGGATTTAAACCGAATGTAGAGACCCAACTTATTCCTTTACTGGCATCCAAACTAGAAGAAGCATCTCTGGAGACAAAAGAGAAAAGTGCCACAACATCTTCGAAAGCTGATCGATCATCCATTGCTCATGCAGGTTTTATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

278

Amino Acids

30.47

Weight (kDa)

9.69

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	809
AccBSI	CCGCTC	2 cut(s)	105, 131
AciI	CCGC	6 cut(s)	100, 103, 115, 129, 188, 261
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	654
AcuI	CTGAAG	2 cut(s)	285, 350
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	174, 280, 613, 794
AluI	AGCT	4 cut(s)	174, 280, 613, 794
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	4 cut(s)	533, 546, 701, 752
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	5 cut(s)	5, 22, 185, 431, 588
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	3 cut(s)	43, 586, 653
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	5 cut(s)	17, 34, 197, 418, 600
BccI	CCATC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	4 cut(s)	533, 546, 701, 752
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	2 cut(s)	20, 183
BfuAI	ACCTGC	1 cut(s)	809
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	6 cut(s)	6, 23, 103, 186, 432, 589
BlsI	GCNGC	6 cut(s)	7, 24, 104, 187, 433, 590
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	326, 598
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	485, 740, 758
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpmI	CTGGAG	1 cut(s)	776
Bpu14I	TTCGAA	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	475
BsaI	GGTCTC	3 cut(s)	533, 546, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	3 cut(s)	295, 657, 732
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	799
BseGI	GGATG	4 cut(s)	479, 691, 731, 803
BseJI	GATNNNNATC	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	182, 296
BseNI	ACTGG	3 cut(s)	295, 657, 732
BseRI	GAGGAG	2 cut(s)	36, 136
BseXI	GCAGC	5 cut(s)	17, 34, 197, 418, 600
BsgI	GTGCAG	2 cut(s)	417, 530
BshFI	GGCC	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	4 cut(s)	533, 546, 701, 752
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	656
Bso31I	GGTCTC	3 cut(s)	533, 546, 701
Bsp119I	TTCGAA	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	214, 470, 501, 796, 800
BspACI	CCGC	6 cut(s)	100, 103, 115, 129, 188, 261
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	2 cut(s)	181, 297
BspDI	ATCGAT	1 cut(s)	799
BspLI	GGNNCC	2 cut(s)	326, 598
BspMAI	CTGCAG	2 cut(s)	24, 187
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	788
BspTNI	GGTCTC	3 cut(s)	533, 546, 701
BsrBI	CCGCTC	2 cut(s)	105, 131
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	3 cut(s)	295, 657, 732
BssMI	GATC	5 cut(s)	214, 470, 501, 796, 800
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	446, 676
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	168, 305, 557
BstF5I	GGATG	4 cut(s)	479, 691, 731, 803
BstKTI	GATC	5 cut(s)	217, 473, 504, 799, 803
BstMAI	GTCTC	4 cut(s)	533, 546, 701, 752
BstMBI	GATC	5 cut(s)	214, 470, 501, 796, 800
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 108, 191, 594
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	20, 183
BstV1I	GCAGC	5 cut(s)	17, 34, 197, 418, 600
BstX2I	RGATCY	2 cut(s)	214, 470
BstYI	RGATCY	2 cut(s)	214, 470
Bsu15I	ATCGAT	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	656
BsuTUI	ATCGAT	1 cut(s)	799
BtsCI	GGATG	4 cut(s)	479, 691, 731, 803
BtsIMutI	CAGTG	1 cut(s)	650
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	799
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	4 cut(s)	108, 254, 422, 815
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	3 cut(s)	168, 305, 557
DpnI	GATC	5 cut(s)	216, 472, 503, 798, 802
DpnII	GATC	5 cut(s)	214, 470, 501, 796, 800
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	3 cut(s)	533, 546, 701
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	285, 350
EcoICRI	GAGCTC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	4 cut(s)	111, 257, 425, 818
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	4 cut(s)	107, 253, 421, 814
FauI	CCCGC	2 cut(s)	122, 181
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	6 cut(s)	6, 23, 103, 186, 432, 589
FokI	GGATG	4 cut(s)	466, 698, 718, 790
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	6 cut(s)	6, 23, 103, 186, 432, 589
FspBI	CTAG	1 cut(s)	740
GluI	GCNGC	6 cut(s)	6, 23, 103, 186, 432, 589
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	656
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	111, 257, 425, 818
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	236, 244
HphI	GGTGA	3 cut(s)	43, 586, 653
Hpy166II	GTNNAC	2 cut(s)	341, 679
Hpy188I	TCNGA	2 cut(s)	171, 830
Hpy188III	TCNNGA	1 cut(s)	755
Hpy8I	GTNNAC	2 cut(s)	341, 679
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	446, 676
HpyCH4V	TGCA	9 cut(s)	22, 31, 185, 380, 434, 476, 511, 607, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 108, 191, 594
HpyF3I	CTNAG	3 cut(s)	168, 305, 557
Hsp92II	CATG	4 cut(s)	111, 257, 425, 818
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	214, 470, 501, 796, 800
LmnI	GCTCC	4 cut(s)	136, 149, 191, 602
Lsp1109I	GCAGC	5 cut(s)	17, 34, 197, 418, 600
LweI	GCATC	3 cut(s)	485, 740, 758
MaeI	CTAG	1 cut(s)	740
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	5 cut(s)	216, 472, 503, 798, 802
MbiI	CCGCTC	2 cut(s)	105, 131
MboI	GATC	5 cut(s)	214, 470, 501, 796, 800
MboII	GAAGA	3 cut(s)	64, 755, 777
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	2 cut(s)	214, 470
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	4 cut(s)	32, 282, 299, 458
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	2 cut(s)	238, 245
MmeI	TCCRAC	2 cut(s)	174, 370
Mox20I	TGGCCA	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	2 cut(s)	461, 693
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	188, 263
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	28, 108, 191, 594
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	214, 470, 501, 796, 800
NlaIII	CATG	4 cut(s)	111, 257, 425, 818
NlaIV	GGNNCC	2 cut(s)	326, 598
NspV	TTCGAA	1 cut(s)	788
PctI	GAATGC	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	7, 24, 104, 187, 433, 590
PleI	GAGTC	2 cut(s)	238, 244
PpsI	GAGTC	2 cut(s)	238, 244
PpuMI	RGGWCCY	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	326, 598
PspPI	GGNCC	1 cut(s)	325
PspPPI	RGGWCCY	1 cut(s)	325
PstI	CTGCAG	2 cut(s)	24, 187
PsuI	RGATCY	2 cut(s)	214, 470
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	461, 693
SatI	GCNGC	6 cut(s)	6, 23, 103, 186, 432, 589
Sau3AI	GATC	5 cut(s)	214, 470, 501, 796, 800
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	238, 245
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	485, 740, 758
SfcI	CTRYAG	2 cut(s)	20, 183
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	32, 282, 299, 458
SsiI	CCGC	6 cut(s)	100, 103, 115, 129, 188, 261
SspMI	CTAG	1 cut(s)	740
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	446, 676
TaqI	TCGA	4 cut(s)	16, 222, 788, 799
TasI	AATT	4 cut(s)	32, 282, 299, 458
TauI	GCSGC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	461, 693
Tru9I	TTAA	2 cut(s)	461, 693
TscAI	CASTG	1 cut(s)	657
TseI	GCWGC	5 cut(s)	5, 22, 185, 431, 588
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	3 cut(s)	55, 373, 438
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	325
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.