Rw1G010660

Belongs to the peptidase M18 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
23977797 .. 23986981
9185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010660.1

Sequence Viewer

Length: 1575 bp
ATGGCAGCGATAACTCGCCTTCACCCTCCTTCTCTCTTCTCCTTGAAATCTTCCTTCTCACTCATAACTCGCTTCCCCTCTTCCCTCTACTCCCCTCGCCCTCTTCGCACTCTCTCCACCACCGCTATCCTCGGCTCCAACGCCCAGGATCAGGTTGAAACTGTGGAACCGCATGGATCCATAGTTGGGGATCTACTGGACTACCTAAACGAGTCTTGGACTCACTTTCACGCTACGGCTGAAGCTAAACGACAACTAATTGATGCTGGTTTTCATTTGCTGAATGAGAATGATGACTGGGACCTTAAGCCTGGTGGACGCTACTTCTTTACACGAAATATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGAAATGGTTTCCATGTGATTGCTGCTCACACTGACAGTCCCTGTCTAAAATTAAAACCAAGATCTGCATCAACCAAGTCTGGCTGTCTAATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTGAGAGATGAGAATGGTTCTTTTATCCAGAAGCTTGTCAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTTAAACCAAATGTAGAGACTCATCTTATTCCATTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGAGACAAAAGAGAAAAGTGCGACAACATCTACTAAAGCTGCTCATCATCCATTGCTCATGCAGGCTCTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGAAATAATGAATTTATCTTTTCAGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTGAGAGCTCTTATTGATTCGTGTAAATCTCCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCCATTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAATTAGTTGCTTAGCTGAAAAGTATGTTGGTGAATGTTCCTTTGAGCGTGCAGTACGCCAATCATTCCTTGTGTCTGCTGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGAGGAATACCATCGACCTGAAATGCAAAAGGGACTTGTTATCAAGCATAATGCAAACCAGCGATATGCTACTAGTGGAGTCACATCTTTTCTTTTCCAAGAAATTGGCAAAATCCACAATCTTCCAACTCAGGAATTTGTGGTGAGAAATGATATGGGATGCGGATCGACAATAGGTCCCATACTAGCTTCAGGGGCGGGCATCCGTACTGTTGATTGTGGAATTGCTCAGCTTTCTATGCACAGTGTGAGAGAGATATGTGGGAAGGAAGATATAGACATTGCTTACAAGTATTTCAAGGCATTCTACCAAACTTTCTCGAGCATTGACAGAAAGCTGATTGTGGATTCGTAA

Protein Analysis

524

Amino Acids

57.72

Weight (kDa)

6.58

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 68 - 510 6.9e-156 Aminopeptidase I zinc metalloprotease (M18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 123, 170, 646, 1383, 1418
AclI AACGTT 1 cut(s) 825
AclWI GGATC 7 cut(s) 156, 171, 184, 198, 1044, 1057, 1393
AcsI RAATTY 3 cut(s) 899, 1204, 1355
AcuI CTGAAG 3 cut(s) 261, 717, 1395
AdeI CACNNNGTG 1 cut(s) 1468
AfaI GTAC 2 cut(s) 1155, 1429
AfiI CCNNNNNNNGG 3 cut(s) 151, 186, 538
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 4 cut(s) 46, 158, 853, 1519
AhdI GACNNNNNGTC 1 cut(s) 1395
AhlI ACTAGT 1 cut(s) 1292
AjnI CCWGG 3 cut(s) 144, 310, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 1110, 1142
AluBI AGCT 9 cut(s) 245, 589, 773, 876, 956, 1115, 1409, 1453, 1558
AluI AGCT 9 cut(s) 245, 589, 773, 876, 956, 1115, 1409, 1453, 1558
Alw21I GWGCWC 3 cut(s) 949, 958, 1072
Alw26I GTCTC 5 cut(s) 522, 598, 677, 731, 1087
Alw44I GTGCAC 1 cut(s) 945
AlwI GGATC 7 cut(s) 156, 171, 184, 198, 1044, 1057, 1393
AlwNI CAGNNNCTG 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 1540
ApaLI GTGCAC 1 cut(s) 945
ApeKI GCWGC 4 cut(s) 5, 407, 773, 876
ApoI RAATTY 3 cut(s) 899, 1204, 1355
AspS9I GGNCC 2 cut(s) 301, 1397
AsuHPI GGTGA 5 cut(s) 14, 629, 995, 1142, 1375
AvaI CYCGRG 1 cut(s) 1540
AvaII GGWCC 2 cut(s) 301, 1397
BaeGI GKGCMC 1 cut(s) 949
BamHI GGATCC 2 cut(s) 176, 1049
BanII GRGCYC 1 cut(s) 958
BbsI GAAGAC 1 cut(s) 922
Bbv12I GWGCWC 3 cut(s) 949, 958, 1072
BbvI GCAGC 4 cut(s) 17, 394, 760, 863
BccI CCATC 2 cut(s) 656, 1239
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 3 cut(s) 146, 312, 981
BcoDI GTCTC 5 cut(s) 522, 598, 677, 731, 1087
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 5 cut(s) 704, 716, 920, 1293, 1406
BfrI CTTAAG 1 cut(s) 305
BglII AGATCT 1 cut(s) 446
BisI GCNGC 4 cut(s) 6, 408, 774, 877
BlpI GCTNAGC 2 cut(s) 1111, 1449
BlsI GCNGC 4 cut(s) 7, 409, 775, 878
Bme1390I CCNGG 3 cut(s) 146, 312, 981
Bme18I GGWCC 2 cut(s) 301, 1397
BmeRI GACNNNNNGTC 1 cut(s) 1395
BmeT110I CYCGRG 1 cut(s) 1540
BmgT120I GGNCC 2 cut(s) 301, 1397
BmiI GGNNCC 6 cut(s) 136, 168, 178, 302, 1051, 1399
BmrFI CCNGG 3 cut(s) 146, 312, 981
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 6 cut(s) 253, 461, 716, 737, 1370, 1431
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 922
Bpu1102I GCTNAGC 2 cut(s) 1111, 1449
BpuEI CTTGAG 1 cut(s) 919
BsaAI YACGTR 1 cut(s) 1010
BsaBI GATNNNNATC 2 cut(s) 451, 1384
BsaI GGTCTC 2 cut(s) 522, 598
BsaJI CCNNGG 3 cut(s) 130, 144, 880
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 186, 538
Bse1I ACTGG 2 cut(s) 201, 302
Bse3DI GCAATG 2 cut(s) 785, 1500
Bse8I GATNNNNATC 2 cut(s) 451, 1384
BseBI CCWGG 3 cut(s) 146, 312, 981
BseDI CCNNGG 3 cut(s) 130, 144, 880
BseGI GGATG 4 cut(s) 667, 781, 1385, 1422
BseJI GATNNNNATC 2 cut(s) 451, 1384
BseLI CCNNNNNNNGG 3 cut(s) 151, 186, 538
BseMI GCAATG 2 cut(s) 785, 1500
BseMII CTCAG 3 cut(s) 941, 1364, 1463
BseNI ACTGG 2 cut(s) 201, 302
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 4 cut(s) 17, 394, 760, 863
BsgI GTGCAG 2 cut(s) 506, 1170
BsiHKAI GWGCWC 3 cut(s) 949, 958, 1072
BsiHKCI CYCGRG 1 cut(s) 1540
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 4 cut(s) 314, 408, 1266, 1383
BslI CCNNNNNNNGG 3 cut(s) 151, 186, 538
BsmAI GTCTC 5 cut(s) 522, 598, 677, 731, 1087
BsmBI CGTCTC 1 cut(s) 1087
BsmFI GGGAC 4 cut(s) 314, 408, 1266, 1383
BsmI GAATGC 1 cut(s) 1523
Bso31I GGTCTC 2 cut(s) 522, 598
BsoBI CYCGRG 1 cut(s) 1540
Bsp1286I GDGCHC 3 cut(s) 949, 958, 1072
Bsp143I GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
Bsp1720I GCTNAGC 2 cut(s) 1111, 1449
BspACI CCGC 5 cut(s) 123, 170, 646, 1383, 1418
BspCNI CTCAG 3 cut(s) 942, 1363, 1462
BspLI GGNNCC 6 cut(s) 136, 168, 178, 302, 1051, 1399
BspPI GGATC 7 cut(s) 156, 171, 184, 198, 1044, 1057, 1393
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 522, 598
BsrDI GCAATG 2 cut(s) 785, 1500
BsrI ACTGG 2 cut(s) 201, 302
BssECI CCNNGG 3 cut(s) 130, 144, 880
BssMI GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
BssT1I CCWWGG 1 cut(s) 880
Bst2UI CCWGG 3 cut(s) 146, 312, 981
Bst4CI ACNGT 6 cut(s) 163, 422, 652, 944, 1432, 1466
Bst6I CTCTTC 5 cut(s) 41, 85, 108, 596, 1029
BstAFI CTTAAG 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 1010
BstC8I GCNNGC 5 cut(s) 544, 798, 1002, 1149, 1420
BstDEI CTNAG 5 cut(s) 533, 950, 1111, 1350, 1449
BstF5I GGATG 4 cut(s) 667, 781, 1385, 1422
BstKTI GATC 7 cut(s) 151, 179, 193, 449, 816, 1052, 1388
BstMAI GTCTC 5 cut(s) 522, 598, 677, 731, 1087
BstMBI GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
BstMWI GCNNNNNNNGC 5 cut(s) 105, 953, 1184, 1415, 1459
BstNI CCWGG 3 cut(s) 146, 312, 981
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 144, 310, 979
BstSLI GKGCMC 1 cut(s) 949
BstSNI TACGTA 1 cut(s) 1010
BstV1I GCAGC 4 cut(s) 17, 394, 760, 863
BstV2I GAAGAC 1 cut(s) 922
BstX2I RGATCY 4 cut(s) 176, 190, 446, 1049
BstXI CCANNNNNNTGG 1 cut(s) 1325
BstYI RGATCY 4 cut(s) 176, 190, 446, 1049
BtsCI GGATG 4 cut(s) 667, 781, 1385, 1422
BtsIMutI CAGTG 4 cut(s) 414, 657, 947, 1471
Cac8I GCNNGC 5 cut(s) 544, 798, 1002, 1149, 1420
CaiI CAGNNNCTG 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 301, 1397
CseI GACGC 2 cut(s) 327, 1104
Csp6I GTAC 2 cut(s) 1154, 1428
CviAII CATG 7 cut(s) 173, 398, 793, 1001, 1183, 1190, 1220
CviQI GTAC 2 cut(s) 1154, 1428
DdeI CTNAG 5 cut(s) 533, 950, 1111, 1350, 1449
DpnI GATC 7 cut(s) 150, 178, 192, 448, 815, 1051, 1387
DpnII GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
DraI TTTAAA 1 cut(s) 670
DraIII CACNNNGTG 1 cut(s) 1468
DriI GACNNNNNGTC 1 cut(s) 1395
Eam1104I CTCTTC 5 cut(s) 41, 85, 108, 596, 1029
Eam1105I GACNNNNNGTC 1 cut(s) 1395
EarI CTCTTC 5 cut(s) 41, 85, 108, 596, 1029
Ecl136II GAGCTC 1 cut(s) 956
Eco105I TACGTA 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 880
Eco24I GRGCYC 1 cut(s) 958
Eco31I GGTCTC 2 cut(s) 522, 598
Eco47I GGWCC 2 cut(s) 301, 1397
Eco53kI GAGCTC 1 cut(s) 956
Eco57I CTGAAG 3 cut(s) 261, 717, 1395
Eco88I CYCGRG 1 cut(s) 1540
EcoICRI GAGCTC 1 cut(s) 956
EcoO109I RGGNCCY 2 cut(s) 301, 1397
EcoRII CCWGG 3 cut(s) 144, 310, 979
EcoT14I CCWWGG 1 cut(s) 880
EcoT38I GRGCYC 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 880
Esp3I CGTCTC 1 cut(s) 1087
FaeI CATG 7 cut(s) 176, 401, 796, 1004, 1186, 1193, 1223
FaqI GGGAC 4 cut(s) 314, 408, 1266, 1383
FatI CATG 7 cut(s) 172, 397, 792, 1000, 1182, 1189, 1219
FauI CCCGC 1 cut(s) 1411
Fnu4HI GCNGC 4 cut(s) 6, 408, 774, 877
FokI GGATG 4 cut(s) 674, 768, 1392, 1409
FriOI GRGCYC 1 cut(s) 958
Fsp4HI GCNGC 4 cut(s) 6, 408, 774, 877
FspBI CTAG 5 cut(s) 704, 716, 920, 1293, 1406
GluI GCNGC 4 cut(s) 6, 408, 774, 877
HapII CCGG 1 cut(s) 384
HgaI GACGC 2 cut(s) 327, 1104
Hin1II CATG 7 cut(s) 176, 401, 796, 1004, 1186, 1193, 1223
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 7 cut(s) 212, 220, 685, 965, 1194, 1299, 1568
HpaII CCGG 1 cut(s) 384
HphI GGTGA 5 cut(s) 14, 629, 995, 1142, 1375
Hpy166II GTNNAC 4 cut(s) 317, 655, 947, 1198
Hpy188I TCNGA 2 cut(s) 736, 808
Hpy188III TCNNGA 5 cut(s) 583, 912, 1047, 1352, 1540
Hpy8I GTNNAC 4 cut(s) 317, 655, 947, 1198
HpyAV CCTTC 4 cut(s) 29, 39, 64, 1480
HpyCH4III ACNGT 6 cut(s) 163, 422, 652, 944, 1432, 1466
HpyCH4IV ACGT 2 cut(s) 825, 1009
HpyCH4V TGCA 8 cut(s) 452, 487, 796, 947, 1151, 1246, 1274, 1462
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 953, 1184, 1415, 1459
HpyF3I CTNAG 5 cut(s) 533, 950, 1111, 1350, 1449
HpySE526I ACGT 2 cut(s) 825, 1009
Hsp92II CATG 7 cut(s) 176, 401, 796, 1004, 1186, 1193, 1223
Kzo9I GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
LmnI GCTCC 2 cut(s) 140, 1075
Lsp1109I GCAGC 4 cut(s) 17, 394, 760, 863
LweI GCATC 6 cut(s) 253, 461, 716, 737, 1370, 1431
MaeI CTAG 5 cut(s) 704, 716, 920, 1293, 1406
MaeII ACGT 2 cut(s) 825, 1009
MaeIII GTNAC 3 cut(s) 821, 938, 1300
MalI GATC 7 cut(s) 150, 178, 192, 448, 815, 1051, 1387
MboI GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
MfeI CAATTG 1 cut(s) 817
MflI RGATCY 4 cut(s) 176, 190, 446, 1049
MhlI GDGCHC 3 cut(s) 949, 958, 1072
MluCI AATT 9 cut(s) 258, 434, 817, 899, 1101, 1204, 1323, 1355, 1443
MlyI GAGTC 5 cut(s) 214, 221, 679, 1203, 1308
MmeI TCCRAC 4 cut(s) 162, 346, 1097, 1370
MseI TTAA 3 cut(s) 306, 437, 669
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 3 cut(s) 146, 312, 981
MunI CAATTG 1 cut(s) 817
Mva1269I GAATGC 1 cut(s) 1523
MvaI CCWGG 3 cut(s) 146, 312, 981
MwoI GCNNNNNNNGC 5 cut(s) 105, 953, 1184, 1415, 1459
NdeII GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
NlaIII CATG 7 cut(s) 176, 401, 796, 1004, 1186, 1193, 1223
NlaIV GGNNCC 6 cut(s) 136, 168, 178, 302, 1051, 1399
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 1300
NspI RCATGY 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 1540
PctI GAATGC 1 cut(s) 1523
PfeI GAWTC 2 cut(s) 965, 1568
PkrI GCNGC 4 cut(s) 7, 409, 775, 878
PleI GAGTC 5 cut(s) 214, 220, 679, 1202, 1307
PpsI GAGTC 5 cut(s) 214, 220, 679, 1202, 1307
Ppu21I YACGTR 1 cut(s) 1010
PpuMI RGGWCCY 2 cut(s) 301, 1397
Psp124BI GAGCTC 1 cut(s) 958
Psp1406I AACGTT 1 cut(s) 825
Psp5II RGGWCCY 2 cut(s) 301, 1397
Psp6I CCWGG 3 cut(s) 144, 310, 979
PspGI CCWGG 3 cut(s) 144, 310, 979
PspN4I GGNNCC 6 cut(s) 136, 168, 178, 302, 1051, 1399
PspPI GGNCC 2 cut(s) 301, 1397
PspPPI RGGWCCY 2 cut(s) 301, 1397
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 4 cut(s) 176, 190, 446, 1049
RsaI GTAC 2 cut(s) 1155, 1429
RsaNI GTAC 2 cut(s) 1154, 1428
SacI GAGCTC 1 cut(s) 958
SaqAI TTAA 3 cut(s) 306, 437, 669
SatI GCNGC 4 cut(s) 6, 408, 774, 877
Sau3AI GATC 7 cut(s) 148, 176, 190, 446, 813, 1049, 1385
Sau96I GGNCC 2 cut(s) 301, 1397
SchI GAGTC 5 cut(s) 214, 221, 679, 1203, 1308
ScrFI CCNGG 3 cut(s) 146, 312, 981
SduI GDGCHC 3 cut(s) 949, 958, 1072
SfaNI GCATC 6 cut(s) 253, 461, 716, 737, 1370, 1431
Sfr274I CTCGAG 1 cut(s) 1540
SinI GGWCC 2 cut(s) 301, 1397
SlaI CTCGAG 1 cut(s) 1540
SmlI CTYRAG 3 cut(s) 305, 934, 1540
SmoI CTYRAG 3 cut(s) 305, 934, 1540
SnaBI TACGTA 1 cut(s) 1010
SpeI ACTAGT 1 cut(s) 1292
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 9 cut(s) 258, 434, 817, 899, 1101, 1204, 1323, 1355, 1443
SsiI CCGC 5 cut(s) 123, 170, 646, 1383, 1418
SspMI CTAG 5 cut(s) 704, 716, 920, 1293, 1406
SstI GAGCTC 1 cut(s) 958
StyD4I CCNGG 3 cut(s) 144, 310, 979
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 6 cut(s) 163, 422, 652, 944, 1432, 1466
TaiI ACGT 2 cut(s) 828, 1012
TaqI TCGA 3 cut(s) 1234, 1388, 1541
TasI AATT 9 cut(s) 258, 434, 817, 899, 1101, 1204, 1323, 1355, 1443
TfiI GAWTC 2 cut(s) 965, 1568
Tru1I TTAA 3 cut(s) 306, 437, 669
Tru9I TTAA 3 cut(s) 306, 437, 669
TscAI CASTG 4 cut(s) 421, 657, 954, 1471
TseFI GTSAC 1 cut(s) 1300
TseI GCWGC 4 cut(s) 5, 407, 773, 876
Tsp45I GTSAC 1 cut(s) 1300
TspDTI ATGAA 3 cut(s) 263, 912, 1047
TspGWI ACGGA 1 cut(s) 1415
TspRI CASTG 4 cut(s) 421, 657, 954, 1471
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 945
VpaK11BI GGWCC 2 cut(s) 301, 1397
XapI RAATTY 3 cut(s) 899, 1204, 1355
XceI RCATGY 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 1540
XspI CTAG 5 cut(s) 704, 716, 920, 1293, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.