Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00149

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

60114 .. 70164

Gene Structure 10051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAGGCTCTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGAAATAATGAATTTATCTTTTCAGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTGAGAGCTCTTATTGATTCGTGTAAATCTCCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCCATTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAATTAGTTGCTTAGCTGAAAAGTATGTTGGTGAATGTTCCTTTGAGCGTGCAGTACGCCAATCATTCCTTGTGTCTGCTGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGAGGAATACCATCGACCTGAAATGCAAAAGGGACTTGTTATCAAGCATAATGCAAACCAGCGATATGCTACTAGTGGAGTCACATCTTTTCTTTTCCAAGAAATTGGCAAAATCCACAACCTTCCAACTCAGGAATTTGTGGTGAGAAATGATATGGGATGCGGATCGACAATAGGTCCCATACTAGCTTCAGGGGCGGGCATCCGTACTGTTGATTGTGGAATTGCTCAGCTTTCTATGCACAGTGTGAGAGAGATATGTGGGAAGGAAGATATAGACATTGCTTACAAGTATTTCAAGGCATTCTACCAAACTTTCTCGAGCATTGACAGAAAGCTGATTGTGGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

260

Amino Acids

28.54

Weight (kDa)

5.35

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	2 - 246	1.5e-82	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	591, 626
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	3 cut(s)	252, 265, 601
AcsI	RAATTY	3 cut(s)	107, 412, 563
AcuI	CTGAAG	1 cut(s)	603
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	2 cut(s)	363, 637
AgsI	TTSAA	2 cut(s)	61, 727
AhdI	GACNNNNNGTC	1 cut(s)	603
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	6 cut(s)	84, 164, 323, 617, 661, 766
AluI	AGCT	6 cut(s)	84, 164, 323, 617, 661, 766
Alw21I	GWGCWC	3 cut(s)	157, 166, 280
Alw26I	GTCTC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	252, 265, 601
Ama87I	CYCGRG	1 cut(s)	748
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	107, 412, 563
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	3 cut(s)	203, 350, 583
AvaI	CYCGRG	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	3 cut(s)	157, 166, 280
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	128, 501, 614
BisI	GCNGC	1 cut(s)	85
BlpI	GCTNAGC	2 cut(s)	319, 657
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	259, 607
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	578, 639
BpiI	GAAGAC	1 cut(s)	130
Bpu1102I	GCTNAGC	2 cut(s)	319, 657
BpuEI	CTTGAG	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	593, 630
BseJI	GATNNNNATC	1 cut(s)	592
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	149, 572, 671
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	378
BsiHKAI	GWGCWC	3 cut(s)	157, 166, 280
BsiHKCI	CYCGRG	1 cut(s)	748
BslFI	GGGAC	2 cut(s)	474, 591
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	474, 591
BsmI	GAATGC	1 cut(s)	731
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	3 cut(s)	157, 166, 280
Bsp143I	GATC	3 cut(s)	21, 257, 593
Bsp1720I	GCTNAGC	2 cut(s)	319, 657
BspACI	CCGC	2 cut(s)	591, 626
BspCNI	CTCAG	3 cut(s)	150, 571, 670
BspLI	GGNNCC	2 cut(s)	259, 607
BspPI	GGATC	3 cut(s)	252, 265, 601
BsrDI	GCAATG	1 cut(s)	708
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	21, 257, 593
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	152, 640, 674
Bst6I	CTCTTC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	6, 210, 357, 628
BstDEI	CTNAG	4 cut(s)	158, 319, 558, 657
BstF5I	GGATG	2 cut(s)	593, 630
BstKTI	GATC	3 cut(s)	24, 260, 596
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	21, 257, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 392, 623, 667
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	157
BstSNI	TACGTA	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	593, 630
BtsIMutI	CAGTG	2 cut(s)	155, 679
Cac8I	GCNNGC	4 cut(s)	6, 210, 357, 628
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	362, 636
CviAII	CATG	4 cut(s)	209, 391, 398, 428
CviJI	RGCY	9 cut(s)	8, 84, 164, 296, 323, 395, 617, 661, 766
CviKI_1	RGCY	9 cut(s)	8, 84, 164, 296, 323, 395, 617, 661, 766
CviQI	GTAC	2 cut(s)	362, 636
DdeI	CTNAG	4 cut(s)	158, 319, 558, 657
DpnI	GATC	3 cut(s)	23, 259, 595
DpnII	GATC	3 cut(s)	21, 257, 593
DraIII	CACNNNGTG	1 cut(s)	676
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	164
Eco105I	TACGTA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	4 cut(s)	212, 394, 401, 431
FaqI	GGGAC	2 cut(s)	474, 591
FatI	CATG	4 cut(s)	208, 390, 397, 427
FauI	CCCGC	1 cut(s)	619
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	2 cut(s)	600, 617
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	3 cut(s)	128, 501, 614
GluI	GCNGC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	212, 394, 401, 431
HinfI	GANTC	4 cut(s)	173, 402, 507, 776
HphI	GGTGA	3 cut(s)	203, 350, 583
Hpy166II	GTNNAC	2 cut(s)	155, 406
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	120, 255, 560, 748
Hpy8I	GTNNAC	2 cut(s)	155, 406
HpyAV	CCTTC	2 cut(s)	560, 688
HpyCH4III	ACNGT	3 cut(s)	152, 640, 674
HpyCH4IV	ACGT	2 cut(s)	33, 217
HpyCH4V	TGCA	6 cut(s)	4, 155, 359, 454, 482, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 392, 623, 667
HpyF3I	CTNAG	4 cut(s)	158, 319, 558, 657
HpySE526I	ACGT	2 cut(s)	33, 217
Hsp92II	CATG	4 cut(s)	212, 394, 401, 431
Kzo9I	GATC	3 cut(s)	21, 257, 593
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	578, 639
MaeI	CTAG	3 cut(s)	128, 501, 614
MaeII	ACGT	2 cut(s)	33, 217
MaeIII	GTNAC	3 cut(s)	29, 146, 508
MalI	GATC	3 cut(s)	23, 259, 595
MboI	GATC	3 cut(s)	21, 257, 593
MboII	GAAGA	3 cut(s)	135, 254, 710
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	3 cut(s)	157, 166, 280
MluCI	AATT	7 cut(s)	25, 107, 309, 412, 531, 563, 651
MlyI	GAGTC	2 cut(s)	411, 516
MmeI	TCCRAC	2 cut(s)	305, 578
MnlI	CCTC	4 cut(s)	86, 151, 238, 424
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	161, 392, 623, 667
NdeII	GATC	3 cut(s)	21, 257, 593
NlaIII	CATG	4 cut(s)	212, 394, 401, 431
NlaIV	GGNNCC	2 cut(s)	259, 607
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	748
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	173, 776
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	2 cut(s)	410, 515
PpsI	GAGTC	2 cut(s)	410, 515
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	259, 607
PspPI	GGNCC	1 cut(s)	605
PspPPI	RGGWCCY	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	363, 637
RsaNI	GTAC	2 cut(s)	362, 636
SacI	GAGCTC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	3 cut(s)	21, 257, 593
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	2 cut(s)	411, 516
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	157, 166, 280
SfaNI	GCATC	2 cut(s)	578, 639
Sfr274I	CTCGAG	1 cut(s)	748
SinI	GGWCC	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	748
SmlI	CTYRAG	2 cut(s)	142, 748
SmoI	CTYRAG	2 cut(s)	142, 748
SnaBI	TACGTA	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	7 cut(s)	25, 107, 309, 412, 531, 563, 651
SsiI	CCGC	2 cut(s)	591, 626
SspMI	CTAG	3 cut(s)	128, 501, 614
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	152, 640, 674
TaiI	ACGT	2 cut(s)	36, 220
TaqI	TCGA	3 cut(s)	442, 596, 749
TasI	AATT	7 cut(s)	25, 107, 309, 412, 531, 563, 651
TfiI	GAWTC	2 cut(s)	173, 776
TscAI	CASTG	2 cut(s)	162, 679
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	120, 255
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	2 cut(s)	162, 679
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	3 cut(s)	107, 412, 563
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	748
XspI	CTAG	3 cut(s)	128, 501, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.