Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_4

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Forward (+)

29983 .. 35097

Gene Structure 5115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c4g00040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGTAATGGTTTCCATGTGATTGCTGCTCACACAGATAGTCCATGTCTAAAATTAAAACCAAGATCCGCATCAACTAAGTCTGGCTGTCTAATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTAAGAGAGGGGAATGGTTCTTTTATCCATAAGCTGGTGAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTCAAACCAAATGTAGAGACTCATCTTATTCCTTTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGACACAAAAGAGAAAAGTGCAACAATATCTACAAAAGGAGCTCATCATCCATTGCTCATGCAGGCGTTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCAAGCTGCCTTGGAGGTGGGAATAATGAGTTTATCTTTTCAGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTAAGAGCTCTTATTGATTCGTGTAAATCACCTGTTGATTTATCAAGTGAGCATGCTATACGCATGGTTGCTTTATTTGACAATGAAGAGGTATATCCATCTTCTCAGCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

242

Amino Acids

26.21

Weight (kDa)

6.49

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	2 - 234	9.6e-78	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	2 cut(s)	111, 307
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	199, 250
AgsI	TTSAA	2 cut(s)	331, 514
AluBI	AGCT	5 cut(s)	250, 437, 537, 617, 718
AluI	AGCT	5 cut(s)	250, 437, 537, 617, 718
Alw21I	GWGCWC	3 cut(s)	439, 610, 619
Alw26I	GTCTC	3 cut(s)	183, 259, 338
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	68, 537
AsuHPI	GGTGA	3 cut(s)	265, 290, 630
BaeGI	GKGCMC	1 cut(s)	610
BanII	GRGCYC	2 cut(s)	439, 619
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	3 cut(s)	439, 610, 619
BbvI	GCAGC	2 cut(s)	55, 524
BccI	CCATC	2 cut(s)	317, 715
BcoDI	GTCTC	3 cut(s)	183, 259, 338
BfaI	CTAG	3 cut(s)	365, 377, 581
BisI	GCNGC	2 cut(s)	69, 538
BlsI	GCNGC	2 cut(s)	70, 539
BmsI	GCATC	3 cut(s)	122, 377, 398
BpiI	GAAGAC	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	112
BsaI	GGTCTC	2 cut(s)	183, 259
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 250
Bse118I	RCCGGY	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	328, 442
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	199, 250
BseMI	GCAATG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	55, 524
BsgI	GTGCAG	1 cut(s)	167
BsiHKAI	GWGCWC	3 cut(s)	439, 610, 619
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	199, 250
BsmAI	GTCTC	3 cut(s)	183, 259, 338
Bso31I	GGTCTC	2 cut(s)	183, 259
Bsp1286I	GDGCHC	3 cut(s)	439, 610, 619
Bsp143I	GATC	2 cut(s)	107, 474
BspACI	CCGC	2 cut(s)	111, 307
BspPI	GGATC	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	183, 259
BsrDI	GCAATG	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	2 cut(s)	107, 474
BssT1I	CCWWGG	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	313, 605
Bst6I	CTCTTC	2 cut(s)	257, 690
BstC8I	GCNNGC	3 cut(s)	205, 459, 663
BstDEI	CTNAG	4 cut(s)	120, 194, 611, 714
BstF5I	GGATG	2 cut(s)	328, 442
BstKTI	GATC	2 cut(s)	110, 477
BstMAI	GTCTC	3 cut(s)	183, 259, 338
BstMBI	GATC	2 cut(s)	107, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	665
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	55, 524
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	328, 442
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	205, 459, 663
Cfr10I	RCCGGY	1 cut(s)	44
CviAII	CATG	5 cut(s)	59, 87, 454, 662, 673
CviJI	RGCY	6 cut(s)	129, 250, 437, 537, 617, 718
CviKI_1	RGCY	6 cut(s)	129, 250, 437, 537, 617, 718
DdeI	CTNAG	4 cut(s)	120, 194, 611, 714
DpnI	GATC	2 cut(s)	109, 476
DpnII	GATC	2 cut(s)	107, 474
Eam1104I	CTCTTC	2 cut(s)	257, 690
EarI	CTCTTC	2 cut(s)	257, 690
Ecl136II	GAGCTC	2 cut(s)	437, 617
Eco130I	CCWWGG	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	439, 619
Eco31I	GGTCTC	2 cut(s)	183, 259
Eco53kI	GAGCTC	2 cut(s)	437, 617
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	437, 617
EcoT14I	CCWWGG	1 cut(s)	541
EcoT38I	GRGCYC	2 cut(s)	439, 619
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	5 cut(s)	62, 90, 457, 665, 676
FatI	CATG	5 cut(s)	58, 86, 453, 661, 672
Fnu4HI	GCNGC	2 cut(s)	69, 538
FokI	GGATG	2 cut(s)	335, 429
FriOI	GRGCYC	2 cut(s)	439, 619
Fsp4HI	GCNGC	2 cut(s)	69, 538
FspBI	CTAG	3 cut(s)	365, 377, 581
GluI	GCNGC	2 cut(s)	69, 538
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	5 cut(s)	62, 90, 457, 665, 676
HinfI	GANTC	3 cut(s)	327, 346, 626
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	265, 290, 630
Hpy166II	GTNNAC	2 cut(s)	316, 608
Hpy188I	TCNGA	2 cut(s)	397, 469
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	2 cut(s)	316, 608
HpyCH4III	ACNGT	2 cut(s)	313, 605
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	148, 416, 457, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	4 cut(s)	120, 194, 611, 714
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	62, 90, 457, 665, 676
Kzo9I	GATC	2 cut(s)	107, 474
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	8 cut(s)	58, 111, 189, 193, 236, 443, 558, 654
Lsp1109I	GCAGC	2 cut(s)	55, 524
LweI	GCATC	3 cut(s)	122, 377, 398
MaeI	CTAG	3 cut(s)	365, 377, 581
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	482, 599
MalI	GATC	2 cut(s)	109, 476
MboI	GATC	2 cut(s)	107, 474
MboII	GAAGA	6 cut(s)	274, 384, 392, 588, 702, 707
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	3 cut(s)	439, 610, 619
MluCI	AATT	2 cut(s)	95, 478
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	152, 217, 279, 539, 604, 691
MseI	TTAA	2 cut(s)	98, 218
MspI	CCGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	2 cut(s)	107, 474
NlaIII	CATG	5 cut(s)	62, 90, 457, 665, 676
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	327, 626
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	70, 539
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	2 cut(s)	439, 619
Psp1406I	AACGTT	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	107
SacI	GAGCTC	2 cut(s)	439, 619
SaqAI	TTAA	2 cut(s)	98, 218
SatI	GCNGC	2 cut(s)	69, 538
Sau3AI	GATC	2 cut(s)	107, 474
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	3 cut(s)	439, 610, 619
SfaNI	GCATC	3 cut(s)	122, 377, 398
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	2 cut(s)	95, 478
SsiI	CCGC	2 cut(s)	111, 307
SspMI	CTAG	3 cut(s)	365, 377, 581
SstI	GAGCTC	2 cut(s)	439, 619
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	313, 605
TaiI	ACGT	1 cut(s)	489
TasI	AATT	2 cut(s)	95, 478
TfiI	GAWTC	2 cut(s)	327, 626
Tru1I	TTAA	2 cut(s)	98, 218
Tru9I	TTAA	2 cut(s)	98, 218
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	68, 537
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	606
XceI	RCATGY	1 cut(s)	665
XspI	CTAG	3 cut(s)	365, 377, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.