FvH4_7g05660

Belongs to the peptidase M18 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
5901214 .. 5909995
8782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05660.t4

Sequence Viewer

Length: 1566 bp
ATGGCAGCGATAACTCGGCTTCACCCTCCTTCTCTCTTGTCCTCCTTCAAATCTTCCTCCTCACTCATCATTCGCTTCCCCTCTTCTTCTACCCTCTACTCCCCTCGCCGTCTTCGCAGTCTCTGCTCCAACGCCCAGGCTCAGGTTTCAACTGCGGAAGCCAATGGATCAATAGTTGGGGATCTACTGGACTACCTCAACGAGTCTTGGACTCACTTTCACGCTACCGCCGAAGCTAAACGACAACTCATTGATGCTGGTTTTCATTTGCTGAATGAAAATGATGAGTGGGACCTTAAGCCTGGTGGACGCTACTTCTTTACACGAAATATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGTAATGGTTTCCATGTGATTGCTGCTCACACAGATAGTCCCTGTCTAAAATTAAAACCAAGATCCGCATCAACTAAGTCTGGCTGTCTAATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTAAGAGAGGGGAATGGTTCTTTTATCCATAAGCTTGTGAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTCAAACCAAATGTAGAGACTCATCTTATTCCTTTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGACACAAAAGAGAAAAGTGCAACAATATCTACAAAAGGAGCTCATCATCCATTGCTCATGCAGGCGTTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGGAATAATGAGTTTATCTTTTCAGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTAAGAGCTCTTATTGATTCATGTAAATCACCTGTTGATTTATCAAGTGAGCATGCTATACGCATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCAATTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAATTAGTTGCTTAGCTGAAAAGTACGTTGGTGAAGGTTCCTTTGAGCGTGCAATACGCCAATCATTCCTTGTGTCTGCTGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGAAGAATACCATCGACCTGAAATGCAGAAGGGACTTGTTATCAAGCATAATGCAAACCAGCGATATGCTACTAGTGGAGTTACCTCTTTTCTTTTCCAAGAAATAGGCAAAATCCACAACCTTCCAACTCAGGAATTTGTGGTGAGAAACGATATGGGATGTGGGTCAACAATAGGTCCCATACTCGCTTCAGGGGCTGGCATCCGTACTGTTGATTGTGGAATTGCTCAGCTTTCTATGCACAGTGTGAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTCACAAATATTTCAAGGCATTCTACCAAACTTTCTCAAGCATTGACAGAAAGCTAATTGTGGATTCGTGA

Protein Analysis

522

Amino Acids

57.24

Weight (kDa)

7.31

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 32 - 258 7e-62 Aminopeptidase I zinc metalloprotease (M18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 155, 228, 441, 637
AclI AACGTT 1 cut(s) 816
AclWI GGATC 4 cut(s) 175, 189, 432, 1048
AcsI RAATTY 2 cut(s) 1195, 1346
AcuI CTGAAG 2 cut(s) 708, 1386
AdeI CACNNNGTG 1 cut(s) 1459
AfaI GTAC 2 cut(s) 1115, 1420
AfiI CCNNNNNNNGG 2 cut(s) 142, 529
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 49, 150, 661, 844, 1510
AhlI ACTAGT 1 cut(s) 1283
AjnI CCWGG 2 cut(s) 135, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 1101, 1133
AluBI AGCT 8 cut(s) 236, 580, 767, 867, 947, 1106, 1444, 1549
AluI AGCT 8 cut(s) 236, 580, 767, 867, 947, 1106, 1444, 1549
Alw21I GWGCWC 4 cut(s) 769, 940, 949, 1063
Alw26I GTCTC 5 cut(s) 125, 513, 589, 668, 1078
Alw44I GTGCAC 1 cut(s) 936
AlwI GGATC 4 cut(s) 175, 189, 432, 1048
AlwNI CAGNNNCTG 2 cut(s) 123, 1409
ApaLI GTGCAC 1 cut(s) 936
ApeKI GCWGC 3 cut(s) 5, 398, 867
ApoI RAATTY 2 cut(s) 1195, 1346
AspS9I GGNCC 2 cut(s) 292, 1388
AsuHPI GGTGA 5 cut(s) 14, 620, 960, 1133, 1366
AvaII GGWCC 2 cut(s) 292, 1388
BaeGI GKGCMC 1 cut(s) 940
BanII GRGCYC 2 cut(s) 769, 949
BbsI GAAGAC 2 cut(s) 104, 913
Bbv12I GWGCWC 4 cut(s) 769, 940, 949, 1063
BbvI GCAGC 3 cut(s) 17, 385, 854
BccI CCATC 2 cut(s) 647, 1230
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 137, 303
BcoDI GTCTC 5 cut(s) 125, 513, 589, 668, 1078
BcuI ACTAGT 1 cut(s) 1283
BfaI CTAG 4 cut(s) 695, 707, 911, 1284
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 3 cut(s) 6, 399, 868
BlpI GCTNAGC 2 cut(s) 1102, 1440
BlsI GCNGC 3 cut(s) 7, 400, 869
Bme1390I CCNGG 2 cut(s) 137, 303
Bme18I GGWCC 2 cut(s) 292, 1388
BmgT120I GGNCC 2 cut(s) 292, 1388
BmiI GGNNCC 3 cut(s) 293, 1129, 1390
BmrFI CCNGG 2 cut(s) 137, 303
BmsI GCATC 5 cut(s) 244, 452, 707, 728, 1422
BpiI GAAGAC 2 cut(s) 104, 913
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 2 cut(s) 1102, 1440
BpuEI CTTGAG 2 cut(s) 910, 1516
BsaBI GATNNNNATC 1 cut(s) 442
BsaI GGTCTC 2 cut(s) 513, 589
BsaJI CCNNGG 2 cut(s) 135, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 529
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 2 cut(s) 776, 1491
Bse8I GATNNNNATC 1 cut(s) 442
BseBI CCWGG 2 cut(s) 137, 303
BseDI CCNNGG 2 cut(s) 135, 871
BseGI GGATG 4 cut(s) 658, 772, 1376, 1413
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 142, 529
BseMI GCAATG 2 cut(s) 776, 1491
BseMII CTCAG 3 cut(s) 155, 1355, 1454
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 940
BseXI GCAGC 3 cut(s) 17, 385, 854
BsgI GTGCAG 1 cut(s) 497
BsiHKAI GWGCWC 4 cut(s) 769, 940, 949, 1063
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 4 cut(s) 305, 399, 1257, 1374
BslI CCNNNNNNNGG 2 cut(s) 142, 529
BsmAI GTCTC 5 cut(s) 125, 513, 589, 668, 1078
BsmBI CGTCTC 1 cut(s) 1078
BsmFI GGGAC 4 cut(s) 305, 399, 1257, 1374
BsmI GAATGC 1 cut(s) 1514
Bso31I GGTCTC 2 cut(s) 513, 589
Bsp1286I GDGCHC 4 cut(s) 769, 940, 949, 1063
Bsp143I GATC 5 cut(s) 167, 181, 437, 804, 1040
Bsp1720I GCTNAGC 2 cut(s) 1102, 1440
BspACI CCGC 4 cut(s) 155, 228, 441, 637
BspCNI CTCAG 3 cut(s) 154, 1354, 1453
BspLI GGNNCC 3 cut(s) 293, 1129, 1390
BspPI GGATC 4 cut(s) 175, 189, 432, 1048
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 2 cut(s) 513, 589
BsrDI GCAATG 2 cut(s) 776, 1491
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 135, 871
BssMI GATC 5 cut(s) 167, 181, 437, 804, 1040
BssT1I CCWWGG 1 cut(s) 871
Bst2UI CCWGG 2 cut(s) 137, 303
Bst4CI ACNGT 4 cut(s) 643, 935, 1423, 1457
Bst6I CTCTTC 3 cut(s) 88, 587, 1020
BstAFI CTTAAG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 5 cut(s) 535, 789, 993, 1140, 1411
BstDEI CTNAG 7 cut(s) 141, 450, 524, 941, 1102, 1341, 1440
BstF5I GGATG 4 cut(s) 658, 772, 1376, 1413
BstKTI GATC 5 cut(s) 170, 184, 440, 807, 1043
BstMAI GTCTC 5 cut(s) 125, 513, 589, 668, 1078
BstMBI GATC 5 cut(s) 167, 181, 437, 804, 1040
BstMWI GCNNNNNNNGC 6 cut(s) 114, 123, 944, 1175, 1406, 1450
BstNI CCWGG 2 cut(s) 137, 303
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 2 cut(s) 135, 301
BstSLI GKGCMC 1 cut(s) 940
BstV1I GCAGC 3 cut(s) 17, 385, 854
BstV2I GAAGAC 2 cut(s) 104, 913
BstX2I RGATCY 2 cut(s) 181, 437
BstYI RGATCY 2 cut(s) 181, 437
BtsCI GGATG 4 cut(s) 658, 772, 1376, 1413
BtsIMutI CAGTG 2 cut(s) 648, 1462
Cac8I GCNNGC 5 cut(s) 535, 789, 993, 1140, 1411
CaiI CAGNNNCTG 2 cut(s) 123, 1409
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 292, 1388
CseI GACGC 2 cut(s) 318, 1095
Csp6I GTAC 2 cut(s) 1114, 1419
CviAII CATG 8 cut(s) 389, 784, 960, 992, 1003, 1174, 1181, 1211
CviQI GTAC 2 cut(s) 1114, 1419
DdeI CTNAG 7 cut(s) 141, 450, 524, 941, 1102, 1341, 1440
DpnI GATC 5 cut(s) 169, 183, 439, 806, 1042
DpnII GATC 5 cut(s) 167, 181, 437, 804, 1040
DraIII CACNNNGTG 1 cut(s) 1459
Eam1104I CTCTTC 3 cut(s) 88, 587, 1020
EarI CTCTTC 3 cut(s) 88, 587, 1020
Ecl136II GAGCTC 2 cut(s) 767, 947
Eco130I CCWWGG 1 cut(s) 871
Eco24I GRGCYC 2 cut(s) 769, 949
Eco31I GGTCTC 2 cut(s) 513, 589
Eco47I GGWCC 2 cut(s) 292, 1388
Eco53kI GAGCTC 2 cut(s) 767, 947
Eco57I CTGAAG 2 cut(s) 708, 1386
EcoICRI GAGCTC 2 cut(s) 767, 947
EcoO109I RGGNCCY 2 cut(s) 292, 1388
EcoRII CCWGG 2 cut(s) 135, 301
EcoT14I CCWWGG 1 cut(s) 871
EcoT38I GRGCYC 2 cut(s) 769, 949
ErhI CCWWGG 1 cut(s) 871
Esp3I CGTCTC 1 cut(s) 1078
FaeI CATG 8 cut(s) 392, 787, 963, 995, 1006, 1177, 1184, 1214
FaqI GGGAC 4 cut(s) 305, 399, 1257, 1374
FatI CATG 8 cut(s) 388, 783, 959, 991, 1002, 1173, 1180, 1210
Fnu4HI GCNGC 3 cut(s) 6, 399, 868
FokI GGATG 4 cut(s) 665, 759, 1383, 1400
FriOI GRGCYC 2 cut(s) 769, 949
Fsp4HI GCNGC 3 cut(s) 6, 399, 868
FspBI CTAG 4 cut(s) 695, 707, 911, 1284
GluI GCNGC 3 cut(s) 6, 399, 868
HapII CCGG 1 cut(s) 375
HgaI GACGC 2 cut(s) 318, 1095
Hin1II CATG 8 cut(s) 392, 787, 963, 995, 1006, 1177, 1184, 1214
HincII GTYRAC 1 cut(s) 1380
HindII GTYRAC 1 cut(s) 1380
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 7 cut(s) 203, 211, 657, 676, 956, 1185, 1559
HpaII CCGG 1 cut(s) 375
HphI GGTGA 5 cut(s) 14, 620, 960, 1133, 1366
Hpy166II GTNNAC 5 cut(s) 308, 646, 938, 1189, 1380
Hpy188I TCNGA 2 cut(s) 727, 799
Hpy188III TCNNGA 4 cut(s) 903, 1038, 1343, 1563
Hpy8I GTNNAC 5 cut(s) 308, 646, 938, 1189, 1380
HpyAV CCTTC 6 cut(s) 39, 55, 1118, 1234, 1343, 1471
HpyCH4III ACNGT 4 cut(s) 643, 935, 1423, 1457
HpyCH4IV ACGT 2 cut(s) 816, 1116
HpyCH4V TGCA 8 cut(s) 478, 746, 787, 938, 1142, 1237, 1265, 1453
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 123, 944, 1175, 1406, 1450
HpyF3I CTNAG 7 cut(s) 141, 450, 524, 941, 1102, 1341, 1440
HpySE526I ACGT 2 cut(s) 816, 1116
Hsp92II CATG 8 cut(s) 392, 787, 963, 995, 1006, 1177, 1184, 1214
Kzo9I GATC 5 cut(s) 167, 181, 437, 804, 1040
LmnI GCTCC 3 cut(s) 131, 764, 1066
Lsp1109I GCAGC 3 cut(s) 17, 385, 854
LweI GCATC 5 cut(s) 244, 452, 707, 728, 1422
MaeI CTAG 4 cut(s) 695, 707, 911, 1284
MaeII ACGT 2 cut(s) 816, 1116
MaeIII GTNAC 3 cut(s) 812, 929, 1291
MalI GATC 5 cut(s) 169, 183, 439, 806, 1042
MboI GATC 5 cut(s) 167, 181, 437, 804, 1040
MfeI CAATTG 1 cut(s) 808
MflI RGATCY 2 cut(s) 181, 437
MhlI GDGCHC 4 cut(s) 769, 940, 949, 1063
MluCI AATT 8 cut(s) 425, 808, 1044, 1092, 1195, 1346, 1434, 1551
MlyI GAGTC 4 cut(s) 205, 212, 670, 1194
MmeI TCCRAC 4 cut(s) 153, 337, 1088, 1361
MseI TTAA 3 cut(s) 297, 428, 548
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 137, 303
MunI CAATTG 1 cut(s) 808
Mva1269I GAATGC 1 cut(s) 1514
MvaI CCWGG 2 cut(s) 137, 303
MwoI GCNNNNNNNGC 6 cut(s) 114, 123, 944, 1175, 1406, 1450
NdeII GATC 5 cut(s) 167, 181, 437, 804, 1040
NlaIII CATG 8 cut(s) 392, 787, 963, 995, 1006, 1177, 1184, 1214
NlaIV GGNNCC 3 cut(s) 293, 1129, 1390
NspI RCATGY 1 cut(s) 995
PaeI GCATGC 1 cut(s) 995
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 1514
PfeI GAWTC 3 cut(s) 657, 956, 1559
PkrI GCNGC 3 cut(s) 7, 400, 869
PleI GAGTC 4 cut(s) 205, 211, 670, 1193
PpsI GAGTC 4 cut(s) 205, 211, 670, 1193
PpuMI RGGWCCY 2 cut(s) 292, 1388
Psp124BI GAGCTC 2 cut(s) 769, 949
Psp1406I AACGTT 1 cut(s) 816
Psp5II RGGWCCY 2 cut(s) 292, 1388
Psp6I CCWGG 2 cut(s) 135, 301
PspGI CCWGG 2 cut(s) 135, 301
PspN4I GGNNCC 3 cut(s) 293, 1129, 1390
PspPI GGNCC 2 cut(s) 292, 1388
PspPPI RGGWCCY 2 cut(s) 292, 1388
PstNI CAGNNNCTG 2 cut(s) 123, 1409
PsuI RGATCY 2 cut(s) 181, 437
RsaI GTAC 2 cut(s) 1115, 1420
RsaNI GTAC 2 cut(s) 1114, 1419
SacI GAGCTC 2 cut(s) 769, 949
SaqAI TTAA 3 cut(s) 297, 428, 548
SatI GCNGC 3 cut(s) 6, 399, 868
Sau3AI GATC 5 cut(s) 167, 181, 437, 804, 1040
Sau96I GGNCC 2 cut(s) 292, 1388
SchI GAGTC 4 cut(s) 205, 212, 670, 1194
ScrFI CCNGG 2 cut(s) 137, 303
SduI GDGCHC 4 cut(s) 769, 940, 949, 1063
SfaNI GCATC 5 cut(s) 244, 452, 707, 728, 1422
SinI GGWCC 2 cut(s) 292, 1388
SmlI CTYRAG 3 cut(s) 296, 925, 1531
SmoI CTYRAG 3 cut(s) 296, 925, 1531
SpeI ACTAGT 1 cut(s) 1283
SphI GCATGC 1 cut(s) 995
Sse9I AATT 8 cut(s) 425, 808, 1044, 1092, 1195, 1346, 1434, 1551
SsiI CCGC 4 cut(s) 155, 228, 441, 637
SspI AATATT 1 cut(s) 1505
SspMI CTAG 4 cut(s) 695, 707, 911, 1284
SstI GAGCTC 2 cut(s) 769, 949
StyD4I CCNGG 2 cut(s) 135, 301
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 4 cut(s) 643, 935, 1423, 1457
TaiI ACGT 2 cut(s) 819, 1119
TaqI TCGA 1 cut(s) 1225
TasI AATT 8 cut(s) 425, 808, 1044, 1092, 1195, 1346, 1434, 1551
TfiI GAWTC 3 cut(s) 657, 956, 1559
Tru1I TTAA 3 cut(s) 297, 428, 548
Tru9I TTAA 3 cut(s) 297, 428, 548
TscAI CASTG 2 cut(s) 648, 1462
TseI GCWGC 3 cut(s) 5, 398, 867
TspDTI ATGAA 5 cut(s) 254, 291, 948, 1038, 1227
TspGWI ACGGA 1 cut(s) 1406
TspRI CASTG 2 cut(s) 648, 1462
Vha464I CTTAAG 1 cut(s) 296
VneI GTGCAC 1 cut(s) 936
VpaK11BI GGWCC 2 cut(s) 292, 1388
XapI RAATTY 2 cut(s) 1195, 1346
XceI RCATGY 1 cut(s) 995
XspI CTAG 4 cut(s) 695, 707, 911, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.