Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

23616715 .. 23629252

Gene Structure 12538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCAGCGATAACTCGCCTTCACCCTCCTTCTCTCTTCTCCTTGAAATCTTCCTCCTCACTCATAACTCGCTTCCCCTCTTCCCTCTACTCGCCTCGCCCTCTTCGCACTCTCTCCACAACCGCTATCCTCGGCTCCAAGCCCCAGGATCAGGTTGAAACTGTGGAACCGCATGGATCCATAGTTGGGGATCTACTGGACTACCTAAACGAGTCTTGGACTCACTTTCACGCTACGGCTGAAGCTAAACGACAACTAATTGATGCTGGTTTTCATTTGCTGAATGAGAATGATGACTGGGACCTTAAGCCTGGTGGACGCTACTTCTTTACACGAAATATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGAAATGGTTTCCATGTGATTGCTGCTCACACCGACAGTCCCTGTCTAAAATTAAAACCAAGATCTGCATCAACCAAGTCTGGCTGTCTAATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTGAGAGATGGGAATGGTTCTTTTATCCAGAAGCTTGTCAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTTAAACCAAATGTAGAGACTCATCTTATTCCATTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGAGACAAAAGAGAAAAGTGCGACAACATCTACGAAAGCTGCTCATCATCCATTGCTCATGCAGGCTCTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGAAATAATGAATTTATCTTTTCTGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTGAGAGCTCTTATTGATTCATGTAAATCACCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCCATTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAATTAGTTGCTTAGCTGAAAAGTATGTTGGTGAATGTTCCTTTGAGCGTGCAGTACGCCAATCATTCCTTGGTATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

393

Amino Acids

42.99

Weight (kDa)

6.89

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	68 - 387	3.3e-100	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	123, 170, 646
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	6 cut(s)	156, 171, 184, 198, 1044, 1057
AcsI	RAATTY	1 cut(s)	899
AcuI	CTGAAG	2 cut(s)	261, 717
AdeI	CACNNNGTG	1 cut(s)	983
AfaI	GTAC	1 cut(s)	1155
AfiI	CCNNNNNNNGG	3 cut(s)	151, 186, 538
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	46, 158, 853
AjnI	CCWGG	3 cut(s)	144, 310, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	1110, 1142
AluBI	AGCT	6 cut(s)	245, 589, 773, 876, 956, 1115
AluI	AGCT	6 cut(s)	245, 589, 773, 876, 956, 1115
Alw21I	GWGCWC	3 cut(s)	949, 958, 1072
Alw26I	GTCTC	5 cut(s)	522, 598, 677, 731, 1087
Alw44I	GTGCAC	1 cut(s)	945
AlwI	GGATC	6 cut(s)	156, 171, 184, 198, 1044, 1057
AlwNI	CAGNNNCTG	1 cut(s)	426
ApaLI	GTGCAC	1 cut(s)	945
ApeKI	GCWGC	4 cut(s)	5, 407, 773, 876
ApoI	RAATTY	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	5 cut(s)	14, 629, 969, 995, 1142
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	949
BamHI	GGATCC	2 cut(s)	176, 1049
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	922
Bbv12I	GWGCWC	3 cut(s)	949, 958, 1072
BbvI	GCAGC	4 cut(s)	17, 394, 760, 863
BccI	CCATC	2 cut(s)	557, 656
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	3 cut(s)	146, 312, 981
BcoDI	GTCTC	5 cut(s)	522, 598, 677, 731, 1087
BfaI	CTAG	3 cut(s)	704, 716, 920
BfrI	CTTAAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	4 cut(s)	6, 408, 774, 877
BlpI	GCTNAGC	1 cut(s)	1111
BlsI	GCNGC	4 cut(s)	7, 409, 775, 878
Bme1390I	CCNGG	3 cut(s)	146, 312, 981
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	5 cut(s)	136, 168, 178, 302, 1051
BmrFI	CCNGG	3 cut(s)	146, 312, 981
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	4 cut(s)	253, 461, 716, 737
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	922
Bpu1102I	GCTNAGC	1 cut(s)	1111
BpuEI	CTTGAG	1 cut(s)	919
BsaAI	YACGTR	1 cut(s)	1010
BsaBI	GATNNNNATC	1 cut(s)	451
BsaI	GGTCTC	2 cut(s)	522, 598
BsaJI	CCNNGG	4 cut(s)	130, 144, 880, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 186, 538
Bse1I	ACTGG	2 cut(s)	201, 302
Bse3DI	GCAATG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	451
BseBI	CCWGG	3 cut(s)	146, 312, 981
BseDI	CCNNGG	4 cut(s)	130, 144, 880, 1168
BseGI	GGATG	2 cut(s)	667, 781
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	151, 186, 538
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	1 cut(s)	941
BseNI	ACTGG	2 cut(s)	201, 302
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	4 cut(s)	17, 394, 760, 863
BsgI	GTGCAG	2 cut(s)	506, 1170
BsiHKAI	GWGCWC	3 cut(s)	949, 958, 1072
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	314, 408
BslI	CCNNNNNNNGG	3 cut(s)	151, 186, 538
BsmAI	GTCTC	5 cut(s)	522, 598, 677, 731, 1087
BsmBI	CGTCTC	1 cut(s)	1087
BsmFI	GGGAC	2 cut(s)	314, 408
Bso31I	GGTCTC	2 cut(s)	522, 598
Bsp1286I	GDGCHC	3 cut(s)	949, 958, 1072
Bsp143I	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
Bsp1720I	GCTNAGC	1 cut(s)	1111
BspACI	CCGC	3 cut(s)	123, 170, 646
BspCNI	CTCAG	1 cut(s)	942
BspLI	GGNNCC	5 cut(s)	136, 168, 178, 302, 1051
BspPI	GGATC	6 cut(s)	156, 171, 184, 198, 1044, 1057
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	2 cut(s)	522, 598
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	201, 302
BssECI	CCNNGG	4 cut(s)	130, 144, 880, 1168
BssMI	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
BssT1I	CCWWGG	2 cut(s)	880, 1168
Bst2UI	CCWGG	3 cut(s)	146, 312, 981
Bst4CI	ACNGT	4 cut(s)	163, 422, 652, 944
Bst6I	CTCTTC	5 cut(s)	41, 85, 108, 596, 1029
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	1010
BstC8I	GCNNGC	4 cut(s)	544, 798, 1002, 1149
BstDEI	CTNAG	3 cut(s)	533, 950, 1111
BstF5I	GGATG	2 cut(s)	667, 781
BstKTI	GATC	6 cut(s)	151, 179, 193, 449, 816, 1052
BstMAI	GTCTC	5 cut(s)	522, 598, 677, 731, 1087
BstMBI	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 953
BstNI	CCWGG	3 cut(s)	146, 312, 981
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	3 cut(s)	144, 310, 979
BstSLI	GKGCMC	1 cut(s)	949
BstSNI	TACGTA	1 cut(s)	1010
BstV1I	GCAGC	4 cut(s)	17, 394, 760, 863
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	4 cut(s)	176, 190, 446, 1049
BstYI	RGATCY	4 cut(s)	176, 190, 446, 1049
BtsCI	GGATG	2 cut(s)	667, 781
BtsIMutI	CAGTG	2 cut(s)	657, 947
Cac8I	GCNNGC	4 cut(s)	544, 798, 1002, 1149
CaiI	CAGNNNCTG	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	2 cut(s)	327, 1104
CsiI	ACCWGGT	1 cut(s)	979
Csp6I	GTAC	1 cut(s)	1154
CviAII	CATG	5 cut(s)	173, 398, 793, 969, 1001
CviQI	GTAC	1 cut(s)	1154
DdeI	CTNAG	3 cut(s)	533, 950, 1111
DpnI	GATC	6 cut(s)	150, 178, 192, 448, 815, 1051
DpnII	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
DraI	TTTAAA	1 cut(s)	670
DraIII	CACNNNGTG	1 cut(s)	983
Eam1104I	CTCTTC	5 cut(s)	41, 85, 108, 596, 1029
EarI	CTCTTC	5 cut(s)	41, 85, 108, 596, 1029
Ecl136II	GAGCTC	1 cut(s)	956
Eco105I	TACGTA	1 cut(s)	1010
Eco130I	CCWWGG	2 cut(s)	880, 1168
Eco24I	GRGCYC	1 cut(s)	958
Eco31I	GGTCTC	2 cut(s)	522, 598
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	956
Eco57I	CTGAAG	2 cut(s)	261, 717
EcoICRI	GAGCTC	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	3 cut(s)	144, 310, 979
EcoT14I	CCWWGG	2 cut(s)	880, 1168
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	2 cut(s)	880, 1168
Esp3I	CGTCTC	1 cut(s)	1087
FaeI	CATG	5 cut(s)	176, 401, 796, 972, 1004
FaqI	GGGAC	2 cut(s)	314, 408
FatI	CATG	5 cut(s)	172, 397, 792, 968, 1000
Fnu4HI	GCNGC	4 cut(s)	6, 408, 774, 877
FokI	GGATG	2 cut(s)	674, 768
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	4 cut(s)	6, 408, 774, 877
FspBI	CTAG	3 cut(s)	704, 716, 920
GluI	GCNGC	4 cut(s)	6, 408, 774, 877
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	2 cut(s)	327, 1104
Hin1II	CATG	5 cut(s)	176, 401, 796, 972, 1004
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	4 cut(s)	212, 220, 685, 965
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	5 cut(s)	14, 629, 969, 995, 1142
Hpy166II	GTNNAC	3 cut(s)	317, 655, 947
Hpy188I	TCNGA	2 cut(s)	736, 808
Hpy188III	TCNNGA	3 cut(s)	583, 912, 1047
Hpy8I	GTNNAC	3 cut(s)	317, 655, 947
HpyAV	CCTTC	2 cut(s)	29, 39
HpyCH4III	ACNGT	4 cut(s)	163, 422, 652, 944
HpyCH4IV	ACGT	2 cut(s)	825, 1009
HpyCH4V	TGCA	5 cut(s)	452, 487, 796, 947, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 953
HpyF3I	CTNAG	3 cut(s)	533, 950, 1111
HpySE526I	ACGT	2 cut(s)	825, 1009
Hsp92II	CATG	5 cut(s)	176, 401, 796, 972, 1004
Kzo9I	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
LmnI	GCTCC	2 cut(s)	140, 1075
Lsp1109I	GCAGC	4 cut(s)	17, 394, 760, 863
LweI	GCATC	4 cut(s)	253, 461, 716, 737
MabI	ACCWGGT	1 cut(s)	979
MaeI	CTAG	3 cut(s)	704, 716, 920
MaeII	ACGT	2 cut(s)	825, 1009
MaeIII	GTNAC	2 cut(s)	821, 938
MalI	GATC	6 cut(s)	150, 178, 192, 448, 815, 1051
MboI	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
MboII	GAAGA	9 cut(s)	28, 42, 72, 95, 613, 723, 731, 927, 1046
MfeI	CAATTG	1 cut(s)	817
MflI	RGATCY	4 cut(s)	176, 190, 446, 1049
MhlI	GDGCHC	3 cut(s)	949, 958, 1072
MluCI	AATT	5 cut(s)	258, 434, 817, 899, 1101
MlyI	GAGTC	3 cut(s)	214, 221, 679
MmeI	TCCRAC	2 cut(s)	346, 1097
MseI	TTAA	3 cut(s)	306, 437, 669
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	146, 312, 981
MunI	CAATTG	1 cut(s)	817
MvaI	CCWGG	3 cut(s)	146, 312, 981
MwoI	GCNNNNNNNGC	2 cut(s)	105, 953
NdeII	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
NlaIII	CATG	5 cut(s)	176, 401, 796, 972, 1004
NlaIV	GGNNCC	5 cut(s)	136, 168, 178, 302, 1051
NmeAIII	GCCGAG	1 cut(s)	111
NspI	RCATGY	1 cut(s)	1004
PaeI	GCATGC	1 cut(s)	1004
PfeI	GAWTC	1 cut(s)	965
PkrI	GCNGC	4 cut(s)	7, 409, 775, 878
PleI	GAGTC	3 cut(s)	214, 220, 679
PpsI	GAGTC	3 cut(s)	214, 220, 679
Ppu21I	YACGTR	1 cut(s)	1010
PpuMI	RGGWCCY	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	958
Psp1406I	AACGTT	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	3 cut(s)	144, 310, 979
PspGI	CCWGG	3 cut(s)	144, 310, 979
PspN4I	GGNNCC	5 cut(s)	136, 168, 178, 302, 1051
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	426
PsuI	RGATCY	4 cut(s)	176, 190, 446, 1049
RsaI	GTAC	1 cut(s)	1155
RsaNI	GTAC	1 cut(s)	1154
SacI	GAGCTC	1 cut(s)	958
SaqAI	TTAA	3 cut(s)	306, 437, 669
SatI	GCNGC	4 cut(s)	6, 408, 774, 877
Sau3AI	GATC	6 cut(s)	148, 176, 190, 446, 813, 1049
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	3 cut(s)	214, 221, 679
ScrFI	CCNGG	3 cut(s)	146, 312, 981
SduI	GDGCHC	3 cut(s)	949, 958, 1072
SexAI	ACCWGGT	1 cut(s)	979
SfaNI	GCATC	4 cut(s)	253, 461, 716, 737
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	305, 934
SmoI	CTYRAG	2 cut(s)	305, 934
SnaBI	TACGTA	1 cut(s)	1010
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	5 cut(s)	258, 434, 817, 899, 1101
SsiI	CCGC	3 cut(s)	123, 170, 646
SspMI	CTAG	3 cut(s)	704, 716, 920
SstI	GAGCTC	1 cut(s)	958
StyD4I	CCNGG	3 cut(s)	144, 310, 979
StyI	CCWWGG	2 cut(s)	880, 1168
TaaI	ACNGT	4 cut(s)	163, 422, 652, 944
TaiI	ACGT	2 cut(s)	828, 1012
TasI	AATT	5 cut(s)	258, 434, 817, 899, 1101
TfiI	GAWTC	1 cut(s)	965
Tru1I	TTAA	3 cut(s)	306, 437, 669
Tru9I	TTAA	3 cut(s)	306, 437, 669
TscAI	CASTG	2 cut(s)	657, 954
TseI	GCWGC	4 cut(s)	5, 407, 773, 876
TspDTI	ATGAA	4 cut(s)	263, 912, 957, 1047
TspRI	CASTG	2 cut(s)	657, 954
Vha464I	CTTAAG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	945
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	899
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1166
XspI	CTAG	3 cut(s)	704, 716, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.