Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Reverse (-)

24230095 .. 24236194

Gene Structure 6100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30550.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGTAATGGTTTCCATGTGATTGCTGCTCACACAGATAGTCCATGTCTAAAATTAAAACCAAGATCCGCATCAACTAAGTCTGGCTGTCTAATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTAAGAGAGGGGAATGGTTCTTTTATCCATAAGCTGGTGAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTCAAACCAAATGTAGAGACTCATCTTATTCCTTTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGACACAAAAGAGAAAAGTGCAACAATATCTACAAAAGGAGCTCATCATCCATTGCTCATGCAGGCGTTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGGAATAATGAGTTTATCTTTTCAGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTAAGAGCTCTTATTGATTCGTGTAAATCACCTGTTGATTTATCAAGTGAGCATGCTATACGCATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCCATTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAATTAGTTGCTTAGCTGAAAAGTACGTTGGTGAAGGTTCCTTTGAGCGTGCAATACGCCAATCATTCCTTGGTAATTTTTCTACCACACCGTTTTCAGTCTGGCAGTTGGATCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

294

Amino Acids

31.79

Weight (kDa)

6.75

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	64 - 376	2.9e-91	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	2 cut(s)	111, 307
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	5 cut(s)	102, 705, 718, 866, 879
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	2 cut(s)	199, 250
AgsI	TTSAA	2 cut(s)	331, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	5 cut(s)	250, 437, 537, 617, 776
AluI	AGCT	5 cut(s)	250, 437, 537, 617, 776
Alw21I	GWGCWC	4 cut(s)	439, 610, 619, 733
Alw26I	GTCTC	4 cut(s)	183, 259, 338, 748
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	5 cut(s)	102, 705, 718, 866, 879
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	68, 537
AsuHPI	GGTGA	4 cut(s)	265, 290, 630, 803
BaeGI	GKGCMC	1 cut(s)	610
BamHI	GGATCC	2 cut(s)	710, 871
BanII	GRGCYC	2 cut(s)	439, 619
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	4 cut(s)	439, 610, 619, 733
BbvI	GCAGC	2 cut(s)	55, 524
BccI	CCATC	1 cut(s)	317
BcoDI	GTCTC	4 cut(s)	183, 259, 338, 748
BfaI	CTAG	3 cut(s)	365, 377, 581
BisI	GCNGC	2 cut(s)	69, 538
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	2 cut(s)	70, 539
BmiI	GGNNCC	3 cut(s)	712, 799, 873
BmsI	GCATC	3 cut(s)	122, 377, 398
BpiI	GAAGAC	1 cut(s)	583
Bpu1102I	GCTNAGC	1 cut(s)	772
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	112
BsaI	GGTCTC	2 cut(s)	183, 259
BsaJI	CCNNGG	2 cut(s)	541, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 250
Bse118I	RCCGGY	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	541, 829
BseGI	GGATG	2 cut(s)	328, 442
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	199, 250
BseMI	GCAATG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	55, 524
BsgI	GTGCAG	1 cut(s)	167
BsiHKAI	GWGCWC	4 cut(s)	439, 610, 619, 733
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	199, 250
BsmAI	GTCTC	4 cut(s)	183, 259, 338, 748
BsmBI	CGTCTC	1 cut(s)	748
Bso31I	GGTCTC	2 cut(s)	183, 259
Bsp1286I	GDGCHC	4 cut(s)	439, 610, 619, 733
Bsp143I	GATC	4 cut(s)	107, 474, 710, 871
Bsp1720I	GCTNAGC	1 cut(s)	772
BspACI	CCGC	2 cut(s)	111, 307
BspLI	GGNNCC	3 cut(s)	712, 799, 873
BspPI	GGATC	5 cut(s)	102, 705, 718, 866, 879
BspTNI	GGTCTC	2 cut(s)	183, 259
BsrDI	GCAATG	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	541, 829
BssMI	GATC	4 cut(s)	107, 474, 710, 871
BssT1I	CCWWGG	2 cut(s)	541, 829
Bst4CI	ACNGT	3 cut(s)	313, 605, 852
Bst6I	CTCTTC	2 cut(s)	257, 690
BstC8I	GCNNGC	4 cut(s)	205, 459, 663, 810
BstDEI	CTNAG	4 cut(s)	120, 194, 611, 772
BstF5I	GGATG	2 cut(s)	328, 442
BstKTI	GATC	4 cut(s)	110, 477, 713, 874
BstMAI	GTCTC	4 cut(s)	183, 259, 338, 748
BstMBI	GATC	4 cut(s)	107, 474, 710, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	665
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	55, 524
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	3 cut(s)	107, 710, 871
BstYI	RGATCY	3 cut(s)	107, 710, 871
BtsCI	GGATG	2 cut(s)	328, 442
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	205, 459, 663, 810
Cfr10I	RCCGGY	1 cut(s)	44
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	5 cut(s)	59, 87, 454, 662, 673
CviJI	RGCY	7 cut(s)	129, 250, 437, 537, 617, 749, 776
CviKI_1	RGCY	7 cut(s)	129, 250, 437, 537, 617, 749, 776
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	4 cut(s)	120, 194, 611, 772
DpnI	GATC	4 cut(s)	109, 476, 712, 873
DpnII	GATC	4 cut(s)	107, 474, 710, 871
Eam1104I	CTCTTC	2 cut(s)	257, 690
EarI	CTCTTC	2 cut(s)	257, 690
Ecl136II	GAGCTC	2 cut(s)	437, 617
Eco130I	CCWWGG	2 cut(s)	541, 829
Eco24I	GRGCYC	2 cut(s)	439, 619
Eco31I	GGTCTC	2 cut(s)	183, 259
Eco53kI	GAGCTC	2 cut(s)	437, 617
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	437, 617
EcoT14I	CCWWGG	2 cut(s)	541, 829
EcoT38I	GRGCYC	2 cut(s)	439, 619
ErhI	CCWWGG	2 cut(s)	541, 829
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	5 cut(s)	62, 90, 457, 665, 676
FatI	CATG	5 cut(s)	58, 86, 453, 661, 672
Fnu4HI	GCNGC	2 cut(s)	69, 538
FokI	GGATG	2 cut(s)	335, 429
FriOI	GRGCYC	2 cut(s)	439, 619
Fsp4HI	GCNGC	2 cut(s)	69, 538
FspBI	CTAG	3 cut(s)	365, 377, 581
GluI	GCNGC	2 cut(s)	69, 538
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	765
Hin1II	CATG	5 cut(s)	62, 90, 457, 665, 676
HinfI	GANTC	3 cut(s)	327, 346, 626
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	265, 290, 630, 803
Hpy166II	GTNNAC	2 cut(s)	316, 608
Hpy188I	TCNGA	2 cut(s)	397, 469
Hpy188III	TCNNGA	2 cut(s)	573, 708
Hpy8I	GTNNAC	2 cut(s)	316, 608
HpyAV	CCTTC	1 cut(s)	788
HpyCH4III	ACNGT	3 cut(s)	313, 605, 852
HpyCH4IV	ACGT	2 cut(s)	486, 786
HpyCH4V	TGCA	5 cut(s)	148, 416, 457, 608, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	4 cut(s)	120, 194, 611, 772
HpySE526I	ACGT	2 cut(s)	486, 786
Hsp92II	CATG	5 cut(s)	62, 90, 457, 665, 676
Kzo9I	GATC	4 cut(s)	107, 474, 710, 871
LmnI	GCTCC	2 cut(s)	434, 736
Lsp1109I	GCAGC	2 cut(s)	55, 524
LweI	GCATC	3 cut(s)	122, 377, 398
MaeI	CTAG	3 cut(s)	365, 377, 581
MaeII	ACGT	2 cut(s)	486, 786
MaeIII	GTNAC	2 cut(s)	482, 599
MalI	GATC	4 cut(s)	109, 476, 712, 873
MboI	GATC	4 cut(s)	107, 474, 710, 871
MboII	GAAGA	5 cut(s)	274, 384, 392, 588, 707
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	3 cut(s)	107, 710, 871
MhlI	GDGCHC	4 cut(s)	439, 610, 619, 733
MluCI	AATT	4 cut(s)	95, 478, 762, 835
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	3 cut(s)	7, 758, 849
MnlI	CCTC	6 cut(s)	152, 217, 279, 539, 604, 691
MseI	TTAA	2 cut(s)	98, 218
MspI	CCGG	1 cut(s)	45
MunI	CAATTG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	4 cut(s)	107, 474, 710, 871
NlaIII	CATG	5 cut(s)	62, 90, 457, 665, 676
NlaIV	GGNNCC	3 cut(s)	712, 799, 873
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	327, 626
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	70, 539
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	2 cut(s)	439, 619
Psp1406I	AACGTT	1 cut(s)	486
PspN4I	GGNNCC	3 cut(s)	712, 799, 873
PsuI	RGATCY	3 cut(s)	107, 710, 871
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
SacI	GAGCTC	2 cut(s)	439, 619
SaqAI	TTAA	2 cut(s)	98, 218
SatI	GCNGC	2 cut(s)	69, 538
Sau3AI	GATC	4 cut(s)	107, 474, 710, 871
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	4 cut(s)	439, 610, 619, 733
SfaNI	GCATC	3 cut(s)	122, 377, 398
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	4 cut(s)	95, 478, 762, 835
SsiI	CCGC	2 cut(s)	111, 307
SspMI	CTAG	3 cut(s)	365, 377, 581
SstI	GAGCTC	2 cut(s)	439, 619
StyI	CCWWGG	2 cut(s)	541, 829
TaaI	ACNGT	3 cut(s)	313, 605, 852
TaiI	ACGT	2 cut(s)	489, 789
TasI	AATT	4 cut(s)	95, 478, 762, 835
TfiI	GAWTC	2 cut(s)	327, 626
Tru1I	TTAA	2 cut(s)	98, 218
Tru9I	TTAA	2 cut(s)	98, 218
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	68, 537
TspDTI	ATGAA	2 cut(s)	708, 867
TspRI	CASTG	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	606
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	3 cut(s)	365, 377, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.