Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Forward (+)

44009366 .. 44017178

Gene Structure 7813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCTTGTTTGGTTGCGTTTGCTGTTGGAGAGAAGTATAGTGCCGGAAATGGTTTCCATGTGATTGCTGCTCACACCGACAGTCCCTGTCTAAAATTAAAACCAAGATCTGCATCAACCAAGTCTGGCTGTCTAATGATAAATAAGCTTGTCAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTTAACAAGGATGGATTTAAACCAAATGTAGAGACTCATCTTATTCCATTACTAGCATCAAAACTAGAAGAAACAGCATCTTCAGAGACAAAAGAGAAAAGTGCGACAACATCTACGAAAGCTGCTCATCATCCATTGCTCATGCAGGCTCTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGAAATAATGAATTCATCATTTCAGGAAGACTAGATAATCTTGCCTCAAGTTGCTGTGCACTGAGAGCTCTTATTGATTCGTGTAAATCTCCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAAGATCCATTCAGGGTGCTGGTGCTCCAATTATGTTTCAGGCTATGAGAAGCATAATTAGTTGCTTAGCTGAAAATTATGTTGGTGAATGTTCCTTTGAGCGTGCAGTACGCCAATCATTCCTTGTGTCTGCTGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGAGGAATACCATCGACCTGAAATGCAAAAGGGACTTGTTATCAAGCATAATGCAAACCAGCGATATGCTACTAGTGGAGTCACATCTTTTCTTTTCCAAGAAATTGGCAAAATCCACAACCTTCCAACTCAGGAATTTGTGGTGAGAAATGATATGGGATGCGGATCGACAATAGGTCCCATACTAGCTTCAGGGGCGGGCATCCGTACTGTTGATTGTGGAATTGCTCAGCTTTCTATGCACAGTGTGAGAGAGATATGTGGGAAGGAAGATATAGACATTGCTTACAAGTATTTCAAGGCATTCTACCAAACTTTCTCGAGCATTGACAGAAAGCTGATTGTGGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

378

Amino Acids

41.08

Weight (kDa)

6.7

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	2 - 47	4.5e-12	Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M18	PF02127	46 - 363	3e-98	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	205, 942, 977
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	2 cut(s)	603, 952
AcsI	RAATTY	3 cut(s)	458, 763, 914
AcuI	CTGAAG	2 cut(s)	276, 954
AdeI	CACNNNGTG	1 cut(s)	1027
AfaI	GTAC	2 cut(s)	714, 988
AgsI	TTSAA	3 cut(s)	412, 606, 1078
AhdI	GACNNNNNGTC	1 cut(s)	954
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	8 cut(s)	148, 332, 435, 515, 674, 968, 1012, 1117
AluI	AGCT	8 cut(s)	148, 332, 435, 515, 674, 968, 1012, 1117
Alw21I	GWGCWC	3 cut(s)	508, 517, 631
Alw26I	GTCTC	3 cut(s)	157, 236, 290
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	603, 952
AlwNI	CAGNNNCTG	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	1099
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	3 cut(s)	68, 332, 435
ApoI	RAATTY	3 cut(s)	458, 763, 914
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	4 cut(s)	188, 554, 701, 934
AvaI	CYCGRG	1 cut(s)	1099
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	3 cut(s)	508, 517, 631
BbvI	GCAGC	3 cut(s)	55, 319, 422
BccI	CCATC	2 cut(s)	215, 798
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	157, 236, 290
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	5 cut(s)	263, 275, 479, 852, 965
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	3 cut(s)	69, 333, 436
BlpI	GCTNAGC	2 cut(s)	670, 1008
BlsI	GCNGC	3 cut(s)	70, 334, 437
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	956
BmeRI	GACNNNNNGTC	1 cut(s)	954
BmeT110I	CYCGRG	1 cut(s)	1099
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	1 cut(s)	958
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	5 cut(s)	122, 275, 296, 929, 990
BpiI	GAAGAC	1 cut(s)	481
Bpu1102I	GCTNAGC	2 cut(s)	670, 1008
BpuEI	CTTGAG	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	569
BsaBI	GATNNNNATC	2 cut(s)	112, 943
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	439
Bse3DI	GCAATG	2 cut(s)	344, 1059
Bse8I	GATNNNNATC	2 cut(s)	112, 943
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	4 cut(s)	226, 340, 944, 981
BseJI	GATNNNNATC	2 cut(s)	112, 943
BseMI	GCAATG	2 cut(s)	344, 1059
BseMII	CTCAG	3 cut(s)	500, 923, 1022
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	3 cut(s)	55, 319, 422
BsgI	GTGCAG	1 cut(s)	729
BsiHKAI	GWGCWC	3 cut(s)	508, 517, 631
BsiHKCI	CYCGRG	1 cut(s)	1099
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	69, 825, 942
BsmAI	GTCTC	3 cut(s)	157, 236, 290
BsmFI	GGGAC	3 cut(s)	69, 825, 942
BsmI	GAATGC	1 cut(s)	1082
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	1099
Bsp1286I	GDGCHC	3 cut(s)	508, 517, 631
Bsp143I	GATC	4 cut(s)	107, 372, 608, 944
Bsp1720I	GCTNAGC	2 cut(s)	670, 1008
BspACI	CCGC	3 cut(s)	205, 942, 977
BspCNI	CTCAG	3 cut(s)	501, 922, 1021
BspLI	GGNNCC	1 cut(s)	958
BspPI	GGATC	2 cut(s)	603, 952
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	344, 1059
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	4 cut(s)	107, 372, 608, 944
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	4 cut(s)	83, 211, 991, 1025
Bst6I	CTCTTC	2 cut(s)	155, 588
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	357, 561, 708, 979
BstDEI	CTNAG	4 cut(s)	509, 670, 909, 1008
BstF5I	GGATG	4 cut(s)	226, 340, 944, 981
BstKTI	GATC	4 cut(s)	110, 375, 611, 947
BstMAI	GTCTC	3 cut(s)	157, 236, 290
BstMBI	GATC	4 cut(s)	107, 372, 608, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 743, 974, 1018
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	508
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	3 cut(s)	55, 319, 422
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	107, 608
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstYI	RGATCY	2 cut(s)	107, 608
BtsCI	GGATG	4 cut(s)	226, 340, 944, 981
BtsIMutI	CAGTG	2 cut(s)	506, 1030
Cac8I	GCNNGC	4 cut(s)	357, 561, 708, 979
CaiI	CAGNNNCTG	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	956
Csp6I	GTAC	2 cut(s)	713, 987
CviAII	CATG	6 cut(s)	59, 352, 560, 742, 749, 779
CviQI	GTAC	2 cut(s)	713, 987
DdeI	CTNAG	4 cut(s)	509, 670, 909, 1008
DpnI	GATC	4 cut(s)	109, 374, 610, 946
DpnII	GATC	4 cut(s)	107, 372, 608, 944
DraI	TTTAAA	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	1027
DriI	GACNNNNNGTC	1 cut(s)	954
Eam1104I	CTCTTC	2 cut(s)	155, 588
Eam1105I	GACNNNNNGTC	1 cut(s)	954
EarI	CTCTTC	2 cut(s)	155, 588
Ecl136II	GAGCTC	1 cut(s)	515
Eco105I	TACGTA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	956
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	276, 954
Eco88I	CYCGRG	1 cut(s)	1099
EcoICRI	GAGCTC	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	956
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	6 cut(s)	62, 355, 563, 745, 752, 782
FaqI	GGGAC	3 cut(s)	69, 825, 942
FatI	CATG	6 cut(s)	58, 351, 559, 741, 748, 778
FauI	CCCGC	1 cut(s)	970
Fnu4HI	GCNGC	3 cut(s)	69, 333, 436
FokI	GGATG	4 cut(s)	233, 327, 951, 968
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	3 cut(s)	69, 333, 436
FspBI	CTAG	5 cut(s)	263, 275, 479, 852, 965
GluI	GCNGC	3 cut(s)	69, 333, 436
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	6 cut(s)	62, 355, 563, 745, 752, 782
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	5 cut(s)	244, 524, 753, 858, 1127
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	188, 554, 701, 934
Hpy166II	GTNNAC	3 cut(s)	214, 506, 757
Hpy188I	TCNGA	2 cut(s)	295, 367
Hpy188III	TCNNGA	4 cut(s)	471, 606, 911, 1099
Hpy8I	GTNNAC	3 cut(s)	214, 506, 757
HpyAV	CCTTC	2 cut(s)	911, 1039
HpyCH4III	ACNGT	4 cut(s)	83, 211, 991, 1025
HpyCH4IV	ACGT	2 cut(s)	384, 568
HpyCH4V	TGCA	7 cut(s)	113, 355, 506, 710, 805, 833, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 743, 974, 1018
HpyF3I	CTNAG	4 cut(s)	509, 670, 909, 1008
HpySE526I	ACGT	2 cut(s)	384, 568
Hsp92II	CATG	6 cut(s)	62, 355, 563, 745, 752, 782
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	107, 372, 608, 944
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	3 cut(s)	55, 319, 422
LweI	GCATC	5 cut(s)	122, 275, 296, 929, 990
MaeI	CTAG	5 cut(s)	263, 275, 479, 852, 965
MaeII	ACGT	2 cut(s)	384, 568
MaeIII	GTNAC	2 cut(s)	380, 859
MalI	GATC	4 cut(s)	109, 374, 610, 946
MboI	GATC	4 cut(s)	107, 372, 608, 944
MboII	GAAGA	6 cut(s)	172, 282, 290, 486, 605, 1061
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	2 cut(s)	107, 608
MhlI	GDGCHC	3 cut(s)	508, 517, 631
MlyI	GAGTC	3 cut(s)	238, 762, 867
MmeI	TCCRAC	2 cut(s)	7, 929
MnlI	CCTC	5 cut(s)	177, 437, 502, 589, 775
MseI	TTAA	3 cut(s)	98, 213, 228
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	1082
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	512, 743, 974, 1018
NdeII	GATC	4 cut(s)	107, 372, 608, 944
NlaIII	CATG	6 cut(s)	62, 355, 563, 745, 752, 782
NlaIV	GGNNCC	1 cut(s)	958
NmuCI	GTSAC	1 cut(s)	859
NspI	RCATGY	1 cut(s)	563
PaeI	GCATGC	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	1099
PctI	GAATGC	1 cut(s)	1082
PfeI	GAWTC	2 cut(s)	524, 1127
PkrI	GCNGC	3 cut(s)	70, 334, 437
PleI	GAGTC	3 cut(s)	238, 761, 866
PpsI	GAGTC	3 cut(s)	238, 761, 866
Ppu21I	YACGTR	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	517
Psp1406I	AACGTT	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	956
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	958
PspPI	GGNCC	1 cut(s)	956
PspPPI	RGGWCCY	1 cut(s)	956
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	107, 608
RsaI	GTAC	2 cut(s)	714, 988
RsaNI	GTAC	2 cut(s)	713, 987
SacI	GAGCTC	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	98, 213, 228
SatI	GCNGC	3 cut(s)	69, 333, 436
Sau3AI	GATC	4 cut(s)	107, 372, 608, 944
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	3 cut(s)	238, 762, 867
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	3 cut(s)	508, 517, 631
SfaNI	GCATC	5 cut(s)	122, 275, 296, 929, 990
Sfr274I	CTCGAG	1 cut(s)	1099
SinI	GGWCC	1 cut(s)	956
SlaI	CTCGAG	1 cut(s)	1099
SmlI	CTYRAG	2 cut(s)	493, 1099
SmoI	CTYRAG	2 cut(s)	493, 1099
SnaBI	TACGTA	1 cut(s)	569
SpeI	ACTAGT	1 cut(s)	851
SphI	GCATGC	1 cut(s)	563
SsiI	CCGC	3 cut(s)	205, 942, 977
SspMI	CTAG	5 cut(s)	263, 275, 479, 852, 965
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	4 cut(s)	83, 211, 991, 1025
TaiI	ACGT	2 cut(s)	387, 571
TaqI	TCGA	3 cut(s)	793, 947, 1100
TfiI	GAWTC	2 cut(s)	524, 1127
Tru1I	TTAA	3 cut(s)	98, 213, 228
Tru9I	TTAA	3 cut(s)	98, 213, 228
TscAI	CASTG	2 cut(s)	513, 1030
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	3 cut(s)	68, 332, 435
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	3 cut(s)	451, 471, 606
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	2 cut(s)	513, 1030
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	3 cut(s)	458, 763, 914
XceI	RCATGY	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	1099
XspI	CTAG	5 cut(s)	263, 275, 479, 852, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.