Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Forward (+)

43945807 .. 43953439

Gene Structure 7633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATAAATGTGCAGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTGAGAGATGGGAATGATTCTTTTATCCAGAAGCTTGTCAAAGTGAAGAGACCTCTTTTACGAATACCTACACTTGCCATTCACCTTGACCGCACAGTGAACAAGGATGGATTTAAACCAAATGTAGAGACTCATCTTATTCCATTACTAGCGTCAAAACTAGAAGAAACAGCATCTTCAGAGACAAAAGAGAAAAGTGCGACAACATCTACGAAAGCTGCTCATCATCCATTGCTGATGCAGGCTCTATCAGATGAGATCAATTGTAACGTTGATGACATAGTCAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAGGTGGAAATAATGAATTTATCTTTTCCGGAAGACTAGATAATCTTGCCTCAAGTTACTGTGCACTGAGAGCTCTTATTGATTCATGTAAATCACCTGGTGATTTAGCAAGTGAGCGTGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGATCCCTTCAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTATGAGACGCATAAGTAGTTGCTTAGCTGAAAAGTATGTTGGTGAATGTTCCTTTGAGCGTGCAGTACGCCAATCATTCCTTGTGTCTGCTGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGAGGAATACCATCGACCTGAAATGCAAAAGGGACTTGTTATCAAGCATAATGCAAACCAGCGATATGCTACTAGTGGGGTCACTTCTTTTCTTTTCCAAGAAATTGGCAAAATCCACAACCTTCCAACTCAGGAATTTGTGGTGAGAAACGATATGGGATGCGGATCGACAATAGGTCCCATACTAGCTTCAGGGGCAGGCATCCGTACTGTTGATTGTGGAATTGCTCAGCTTTCTATGCACAGGTACTGCAATGGATTGATGCTACACCATACTAGATTAAGTCCCAGATTTTGTATAGGTGATTCATTACTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

355

Amino Acids

39.03

Weight (kDa)

6.7

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	2 - 331	1.4e-109	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	437
AciI	CCGC	2 cut(s)	172, 909
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	3 cut(s)	570, 583, 919
AcsI	RAATTY	3 cut(s)	425, 730, 881
AcuI	CTGAAG	3 cut(s)	243, 566, 921
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	681, 955, 995
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	379
AhdI	GACNNNNNGTC	1 cut(s)	921
AhlI	ACTAGT	1 cut(s)	818
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	115, 299, 402, 482, 641, 935, 979
AluI	AGCT	7 cut(s)	115, 299, 402, 482, 641, 935, 979
Alw21I	GWGCWC	3 cut(s)	475, 484, 598
Alw26I	GTCTC	5 cut(s)	48, 124, 203, 257, 613
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	3 cut(s)	570, 583, 919
AlwNI	CAGNNNCTG	1 cut(s)	996
Aor13HI	TCCGGA	1 cut(s)	437
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	299, 402
ApoI	RAATTY	3 cut(s)	425, 730, 881
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	6 cut(s)	155, 495, 521, 668, 901, 1061
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	3 cut(s)	475, 484, 598
BbvI	GCAGC	2 cut(s)	286, 389
BccI	CCATC	3 cut(s)	83, 182, 765
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	5 cut(s)	48, 124, 203, 257, 613
BcuI	ACTAGT	1 cut(s)	818
BfaI	CTAG	7 cut(s)	230, 242, 446, 819, 932, 1023, 1066
BisI	GCNGC	2 cut(s)	300, 403
BlpI	GCTNAGC	2 cut(s)	637, 975
BlsI	GCNGC	2 cut(s)	301, 404
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	923
BmeRI	GACNNNNNGTC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	577, 925
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	5 cut(s)	263, 309, 896, 957, 999
BpiI	GAAGAC	1 cut(s)	448
Bpu1102I	GCTNAGC	2 cut(s)	637, 975
BpuEI	CTTGAG	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	910
BsaI	GGTCTC	2 cut(s)	48, 124
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	311, 1006
Bse8I	GATNNNNATC	1 cut(s)	910
BseAI	TCCGGA	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	4 cut(s)	193, 307, 911, 948
BseJI	GATNNNNATC	1 cut(s)	910
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	311, 1006
BseMII	CTCAG	3 cut(s)	467, 890, 989
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	286, 389
BsgI	GTGCAG	2 cut(s)	32, 696
BsiHKAI	GWGCWC	3 cut(s)	475, 484, 598
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	3 cut(s)	792, 909, 1017
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	5 cut(s)	48, 124, 203, 257, 613
BsmBI	CGTCTC	1 cut(s)	613
BsmFI	GGGAC	3 cut(s)	792, 909, 1017
Bso31I	GGTCTC	2 cut(s)	48, 124
Bsp1286I	GDGCHC	3 cut(s)	475, 484, 598
Bsp13I	TCCGGA	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	339, 575, 911
Bsp1720I	GCTNAGC	2 cut(s)	637, 975
BspACI	CCGC	2 cut(s)	172, 909
BspCNI	CTCAG	3 cut(s)	468, 889, 988
BspEI	TCCGGA	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	577, 925
BspPI	GGATC	3 cut(s)	570, 583, 919
BspTNI	GGTCTC	2 cut(s)	48, 124
BsrDI	GCAATG	2 cut(s)	311, 1006
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	3 cut(s)	339, 575, 911
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	178, 470, 958
Bst6I	CTCTTC	2 cut(s)	122, 555
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	5 cut(s)	70, 324, 528, 675, 946
BstDEI	CTNAG	5 cut(s)	59, 476, 637, 876, 975
BstF5I	GGATG	4 cut(s)	193, 307, 911, 948
BstKTI	GATC	3 cut(s)	342, 578, 914
BstMAI	GTCTC	5 cut(s)	48, 124, 203, 257, 613
BstMBI	GATC	3 cut(s)	339, 575, 911
BstMWI	GCNNNNNNNGC	4 cut(s)	479, 710, 941, 985
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	475
BstSNI	TACGTA	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	286, 389
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	575
BtsCI	GGATG	4 cut(s)	193, 307, 911, 948
BtsIMutI	CAGTG	2 cut(s)	183, 473
Cac8I	GCNNGC	5 cut(s)	70, 324, 528, 675, 946
CaiI	CAGNNNCTG	1 cut(s)	996
Cfr13I	GGNCC	1 cut(s)	923
CseI	GACGC	2 cut(s)	222, 630
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	680, 954, 994
CviAII	CATG	4 cut(s)	495, 709, 716, 746
CviQI	GTAC	3 cut(s)	680, 954, 994
DdeI	CTNAG	5 cut(s)	59, 476, 637, 876, 975
DpnI	GATC	3 cut(s)	341, 577, 913
DpnII	GATC	3 cut(s)	339, 575, 911
DraI	TTTAAA	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	509
DriI	GACNNNNNGTC	1 cut(s)	921
Eam1104I	CTCTTC	2 cut(s)	122, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	921
EarI	CTCTTC	2 cut(s)	122, 555
Ecl136II	GAGCTC	1 cut(s)	482
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	48, 124
Eco47I	GGWCC	1 cut(s)	923
Eco53kI	GAGCTC	1 cut(s)	482
Eco57I	CTGAAG	3 cut(s)	243, 566, 921
EcoICRI	GAGCTC	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	923
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	4 cut(s)	498, 712, 719, 749
FaqI	GGGAC	3 cut(s)	792, 909, 1017
FatI	CATG	4 cut(s)	494, 708, 715, 745
Fnu4HI	GCNGC	2 cut(s)	300, 403
FokI	GGATG	4 cut(s)	200, 294, 918, 935
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	2 cut(s)	300, 403
FspBI	CTAG	7 cut(s)	230, 242, 446, 819, 932, 1023, 1066
GluI	GCNGC	2 cut(s)	300, 403
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	2 cut(s)	222, 630
Hin1II	CATG	4 cut(s)	498, 712, 719, 749
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	5 cut(s)	98, 211, 491, 720, 1052
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	6 cut(s)	155, 495, 521, 668, 901, 1061
Hpy166II	GTNNAC	3 cut(s)	181, 473, 724
Hpy188I	TCNGA	2 cut(s)	262, 334
Hpy188III	TCNNGA	4 cut(s)	109, 438, 573, 878
Hpy8I	GTNNAC	3 cut(s)	181, 473, 724
HpyAV	CCTTC	2 cut(s)	590, 878
HpyCH4III	ACNGT	3 cut(s)	178, 470, 958
HpyCH4IV	ACGT	2 cut(s)	351, 535
HpyCH4V	TGCA	8 cut(s)	13, 322, 473, 677, 772, 800, 988, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	479, 710, 941, 985
HpyF3I	CTNAG	5 cut(s)	59, 476, 637, 876, 975
HpySE526I	ACGT	2 cut(s)	351, 535
Hsp92II	CATG	4 cut(s)	498, 712, 719, 749
Kpn2I	TCCGGA	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	339, 575, 911
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	286, 389
LweI	GCATC	5 cut(s)	263, 309, 896, 957, 999
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	7 cut(s)	230, 242, 446, 819, 932, 1023, 1066
MaeII	ACGT	2 cut(s)	351, 535
MaeIII	GTNAC	3 cut(s)	347, 464, 826
MalI	GATC	3 cut(s)	341, 577, 913
MboI	GATC	3 cut(s)	339, 575, 911
MboII	GAAGA	5 cut(s)	139, 249, 257, 453, 572
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	3 cut(s)	475, 484, 598
MluCI	AATT	6 cut(s)	343, 425, 730, 849, 881, 969
MlyI	GAGTC	2 cut(s)	205, 729
MmeI	TCCRAC	2 cut(s)	623, 896
MnlI	CCTC	6 cut(s)	17, 144, 404, 469, 556, 742
MroI	TCCGGA	1 cut(s)	437
MseI	TTAA	3 cut(s)	195, 1028, 1062
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	479, 710, 941, 985
NdeII	GATC	3 cut(s)	339, 575, 911
NlaIII	CATG	4 cut(s)	498, 712, 719, 749
NlaIV	GGNNCC	2 cut(s)	577, 925
NmuCI	GTSAC	1 cut(s)	826
PfeI	GAWTC	3 cut(s)	98, 491, 1052
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	301, 404
PleI	GAGTC	2 cut(s)	205, 728
PpsI	GAGTC	2 cut(s)	205, 728
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	923
Psp124BI	GAGCTC	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	577, 925
PspPI	GGNCC	1 cut(s)	923
PspPPI	RGGWCCY	1 cut(s)	923
PstNI	CAGNNNCTG	1 cut(s)	996
PsuI	RGATCY	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	681, 955, 995
RsaNI	GTAC	3 cut(s)	680, 954, 994
SacI	GAGCTC	1 cut(s)	484
SaqAI	TTAA	3 cut(s)	195, 1028, 1062
SatI	GCNGC	2 cut(s)	300, 403
Sau3AI	GATC	3 cut(s)	339, 575, 911
Sau96I	GGNCC	1 cut(s)	923
SchI	GAGTC	2 cut(s)	205, 729
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	3 cut(s)	475, 484, 598
SexAI	ACCWGGT	1 cut(s)	505
SfaNI	GCATC	5 cut(s)	263, 309, 896, 957, 999
SinI	GGWCC	1 cut(s)	923
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
SnaBI	TACGTA	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	818
Sse9I	AATT	6 cut(s)	343, 425, 730, 849, 881, 969
SsiI	CCGC	2 cut(s)	172, 909
SspMI	CTAG	7 cut(s)	230, 242, 446, 819, 932, 1023, 1066
SstI	GAGCTC	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	178, 470, 958
TaiI	ACGT	2 cut(s)	354, 538
TaqI	TCGA	2 cut(s)	760, 914
TasI	AATT	6 cut(s)	343, 425, 730, 849, 881, 969
TfiI	GAWTC	3 cut(s)	98, 491, 1052
Tru1I	TTAA	3 cut(s)	195, 1028, 1062
Tru9I	TTAA	3 cut(s)	195, 1028, 1062
TscAI	CASTG	2 cut(s)	183, 480
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	2 cut(s)	299, 402
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	4 cut(s)	438, 483, 573, 1044
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	2 cut(s)	183, 480
Tth111I	GACNNNGTC	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	3 cut(s)	425, 730, 881
XspI	CTAG	7 cut(s)	230, 242, 446, 819, 932, 1023, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.