Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001243

Physical Location & Seq

Genomic Coordinates Forward (+)

24197491 .. 24203147

Gene Structure 5657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAGCGATAACTCGGCTTCATCCTCCTTCTCTCTTGTCCTCCTTCAAATCTTCCTCCTCATTCATCACTCGCTTCCCCTCTTCTACCCTCTACTCCCCTCGCCGTCTTCGCAGTCTCTGCTCCAACGCCCAGGCTCAGGTTTCAACTGCGGAAGCCAACGGATCAATAGTTGGGGATCTACTTGACTACCTCAACGAGTCTTGGACTCACTTTCATGCTACCGCCGAAGCTAAACGACAACTCATTGACGCTGTGCTGTGGGACCTTAAGCCCGGTGGGCGCTACTTCTTTACACGAAATATGTCTTGTTTGGTTGTGTTTGCTGTTGGAGAGAAGTATAGTGCCGGTAATGGTTTCCATGTGATTGCTGCTCACACAGATAGTCCCTGTCTAAAATTAAAACCAAGATCCGCATCAACTAAGTCTGGCTGTCTAATGATAAATGTGCTGACCTATGGAGGTGGTTTGTGGCATACTTGGTTTGATAGAGACCTAAGTGTGGCAGGCAGGGTTATTTTAAGAGAGGGGAATGGTTCTTACCTGGAGGTCATCACTGAGAACATCTTTCTCTTTTCTGTTTGCTTGTTTAGCACAGTGAACAAGGATGGATTTAAACCAAATGCAGAGACTCATCTTATTCCTTTACTGGCATCAAAACTAGAAGAAACAGCATCTTCAGACACAAAAGAGAAAAGTGCAACAATATCTACAAAAGGAGCTCATCATCCATTGCTCATGCAGGCATTATCAGATGAGATCAATTGTAACGTTGATGACATAGTGAGCATTGAGTTGAATGTCTGTGATACCCAACCGAGCTGCCTTGGAAGACTAGATAATCTTGCCTCAAGTTACCGTGCACTAAGAGCTCTTATTGATTCTTGTAAATCACCTGGTGATTTAGCAAGTGAGCATGCTATACCCATGGTTGCTTTATTTGACAATGAAGAGGGTGCTGGTGCTCCAACTATGTTTCAGGCTACGAGAGGCATAATTAGTTGCTTAGCTGAAAAGTACGTTGGTGAAGGTTCCTTTGAGCGTGCAATACGCCAATCATTCCTTGTGGACAAGATATCCAGGATCAAGAAGTACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

367

Amino Acids

40.0

Weight (kDa)

7.12

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	64 - 318	2.6e-56	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04710
fragaria_vesca	FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g27850 FvH4_1g30510 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_1g30550 FvH4_7g04991 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_7g05660 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00010 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040 FvH4_c4g00040
malus_domestica	MD02G1255800.v1.1 MD07G1065400.v1.1
prunus_persica	Prupe.2G079500_v2.0.a1
pyrus_communis	pycom02g21670
rosa_chinensis	RchiOBHm_Chr1g0332601
rosa_laevigata	RLG00000029652 RLG00000029714
rosa_multiflora	Rmu_sc0004413.1_g000027
rosa_roxburghii	Rroxscaffold_4G00318110
rosa_rugosa	Rorug01G0105600 Rorug01G0105600
rosa_samantha	Rh1AG126700 Rh1BG096400 Rh1CG120500 Rh1DG131100
rosa_wichuraiana	Rw0G003960 Rw1G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 225, 414
AclI	AACGTT	1 cut(s)	771
AclWI	GGATC	4 cut(s)	172, 186, 405, 1091
AcuI	CTGAAG	1 cut(s)	663
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	2 cut(s)	1019, 1094
AfiI	CCNNNNNNNGG	2 cut(s)	139, 502
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	49, 147, 799
AjnI	CCWGG	4 cut(s)	132, 543, 895, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	1005, 1037
AluBI	AGCT	5 cut(s)	233, 722, 822, 872, 1010
AluI	AGCT	5 cut(s)	233, 722, 822, 872, 1010
Alw21I	GWGCWC	4 cut(s)	724, 865, 874, 967
Alw26I	GTCTC	3 cut(s)	122, 486, 623
Alw44I	GTGCAC	1 cut(s)	861
AlwI	GGATC	4 cut(s)	172, 186, 405, 1091
AlwNI	CAGNNNCTG	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	3 cut(s)	5, 371, 822
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	885, 911, 1037
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	724, 874
BbsI	GAAGAC	2 cut(s)	101, 838
Bbv12I	GWGCWC	4 cut(s)	724, 865, 874, 967
BbvI	GCAGC	3 cut(s)	17, 358, 809
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	4 cut(s)	134, 545, 897, 1081
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	122, 486, 623
BfaI	CTAG	2 cut(s)	662, 836
BfoI	RGCGCY	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	280
BisI	GCNGC	3 cut(s)	6, 372, 823
BlpI	GCTNAGC	1 cut(s)	1006
BlsI	GCNGC	3 cut(s)	7, 373, 824
BmcAI	AGTACT	1 cut(s)	1094
Bme1390I	CCNGG	5 cut(s)	134, 276, 545, 897, 1081
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	266, 1033
BmrFI	CCNGG	5 cut(s)	134, 276, 545, 897, 1081
BmsI	GCATC	3 cut(s)	425, 662, 683
BpiI	GAAGAC	2 cut(s)	101, 838
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	1006
BpuEI	CTTGAG	1 cut(s)	835
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	132, 826, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 502
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	654
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	4 cut(s)	134, 545, 897, 1081
BseDI	CCNNGG	3 cut(s)	132, 826, 927
BseGI	GGATG	3 cut(s)	22, 613, 727
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	139, 502
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	152, 549
BseNI	ACTGG	1 cut(s)	654
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	3 cut(s)	17, 358, 809
BsiHKAI	GWGCWC	4 cut(s)	724, 865, 874, 967
BsiSI	CCGG	2 cut(s)	276, 348
BslFI	GGGAC	2 cut(s)	278, 372
BslI	CCNNNNNNNGG	2 cut(s)	139, 502
BsmAI	GTCTC	3 cut(s)	122, 486, 623
BsmFI	GGGAC	2 cut(s)	278, 372
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	4 cut(s)	724, 865, 874, 967
Bsp143I	GATC	5 cut(s)	164, 178, 410, 759, 1083
Bsp1720I	GCTNAGC	1 cut(s)	1006
Bsp19I	CCATGG	1 cut(s)	927
BspACI	CCGC	3 cut(s)	152, 225, 414
BspCNI	CTCAG	2 cut(s)	151, 550
BspLI	GGNNCC	2 cut(s)	266, 1033
BspPI	GGATC	4 cut(s)	172, 186, 405, 1091
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	132, 826, 927
BssMI	GATC	5 cut(s)	164, 178, 410, 759, 1083
BssT1I	CCWWGG	2 cut(s)	826, 927
Bst2UI	CCWGG	4 cut(s)	134, 545, 897, 1081
Bst4CI	ACNGT	2 cut(s)	598, 860
Bst6I	CTCTTC	2 cut(s)	88, 945
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	4 cut(s)	508, 744, 918, 1044
BstDEI	CTNAG	6 cut(s)	138, 423, 497, 558, 866, 1006
BstDSI	CCRYGG	1 cut(s)	927
BstF5I	GGATG	3 cut(s)	22, 613, 727
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	5 cut(s)	167, 181, 413, 762, 1086
BstMAI	GTCTC	3 cut(s)	122, 486, 623
BstMBI	GATC	5 cut(s)	164, 178, 410, 759, 1083
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 120, 280, 591, 869
BstNI	CCWGG	4 cut(s)	134, 545, 897, 1081
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	5 cut(s)	132, 274, 543, 895, 1079
BstSLI	GKGCMC	1 cut(s)	865
BstV1I	GCAGC	3 cut(s)	17, 358, 809
BstV2I	GAAGAC	2 cut(s)	101, 838
BstX2I	RGATCY	2 cut(s)	178, 410
BstYI	RGATCY	2 cut(s)	178, 410
BtgI	CCRYGG	1 cut(s)	927
BtsCI	GGATG	3 cut(s)	22, 613, 727
BtsIMutI	CAGTG	2 cut(s)	555, 603
Cac8I	GCNNGC	4 cut(s)	508, 744, 918, 1044
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	2 cut(s)	1018, 1093
CviAII	CATG	5 cut(s)	218, 362, 739, 917, 928
CviQI	GTAC	2 cut(s)	1018, 1093
DdeI	CTNAG	6 cut(s)	138, 423, 497, 558, 866, 1006
DpnI	GATC	5 cut(s)	166, 180, 412, 761, 1085
DpnII	GATC	5 cut(s)	164, 178, 410, 759, 1083
DraI	TTTAAA	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	899
Eam1104I	CTCTTC	2 cut(s)	88, 945
EarI	CTCTTC	2 cut(s)	88, 945
Ecl136II	GAGCTC	2 cut(s)	722, 872
Eco130I	CCWWGG	2 cut(s)	826, 927
Eco24I	GRGCYC	2 cut(s)	724, 874
Eco31I	GGTCTC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	722, 872
Eco57I	CTGAAG	1 cut(s)	663
EcoICRI	GAGCTC	2 cut(s)	722, 872
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	4 cut(s)	132, 543, 895, 1079
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	2 cut(s)	826, 927
EcoT38I	GRGCYC	2 cut(s)	724, 874
ErhI	CCWWGG	2 cut(s)	826, 927
FaeI	CATG	5 cut(s)	221, 365, 742, 920, 931
FaqI	GGGAC	2 cut(s)	278, 372
FatI	CATG	5 cut(s)	217, 361, 738, 916, 927
Fnu4HI	GCNGC	3 cut(s)	6, 372, 823
FokI	GGATG	3 cut(s)	9, 620, 714
FriOI	GRGCYC	2 cut(s)	724, 874
Fsp4HI	GCNGC	3 cut(s)	6, 372, 823
FspBI	CTAG	2 cut(s)	662, 836
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	6, 372, 823
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	286
HapII	CCGG	2 cut(s)	276, 348
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	221, 365, 742, 920, 931
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	200, 208, 631, 881
HpaII	CCGG	2 cut(s)	276, 348
HphI	GGTGA	3 cut(s)	885, 911, 1037
Hpy166II	GTNNAC	3 cut(s)	601, 863, 1069
Hpy188I	TCNGA	2 cut(s)	682, 754
Hpy188III	TCNNGA	2 cut(s)	1087, 1098
Hpy8I	GTNNAC	3 cut(s)	601, 863, 1069
HpyAV	CCTTC	3 cut(s)	39, 55, 1022
HpyCH4III	ACNGT	2 cut(s)	598, 860
HpyCH4IV	ACGT	2 cut(s)	771, 1020
HpyCH4V	TGCA	5 cut(s)	626, 701, 742, 863, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 120, 280, 591, 869
HpyF3I	CTNAG	6 cut(s)	138, 423, 497, 558, 866, 1006
HpySE526I	ACGT	2 cut(s)	771, 1020
Hsp92II	CATG	5 cut(s)	221, 365, 742, 920, 931
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	164, 178, 410, 759, 1083
LmnI	GCTCC	3 cut(s)	128, 719, 970
Lsp1109I	GCAGC	3 cut(s)	17, 358, 809
LweI	GCATC	3 cut(s)	425, 662, 683
MabI	ACCWGGT	1 cut(s)	895
MaeI	CTAG	2 cut(s)	662, 836
MaeII	ACGT	2 cut(s)	771, 1020
MaeIII	GTNAC	2 cut(s)	767, 854
MalI	GATC	5 cut(s)	166, 180, 412, 761, 1085
MboI	GATC	5 cut(s)	164, 178, 410, 759, 1083
MboII	GAAGA	7 cut(s)	45, 75, 101, 669, 677, 843, 962
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	2 cut(s)	178, 410
MhlI	GDGCHC	4 cut(s)	724, 865, 874, 967
MluCI	AATT	3 cut(s)	398, 763, 996
MlyI	GAGTC	3 cut(s)	202, 209, 625
MmeI	TCCRAC	3 cut(s)	150, 310, 992
MseI	TTAA	4 cut(s)	270, 401, 521, 615
MslI	CAYNNNNRTG	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	276, 348
MspR9I	CCNGG	5 cut(s)	134, 276, 545, 897, 1081
MunI	CAATTG	1 cut(s)	763
MvaI	CCWGG	4 cut(s)	134, 545, 897, 1081
MwoI	GCNNNNNNNGC	5 cut(s)	111, 120, 280, 591, 869
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	927
NdeII	GATC	5 cut(s)	164, 178, 410, 759, 1083
NlaIII	CATG	5 cut(s)	221, 365, 742, 920, 931
NlaIV	GGNNCC	2 cut(s)	266, 1033
NspI	RCATGY	1 cut(s)	920
PaeI	GCATGC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	881
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	3 cut(s)	7, 373, 824
PleI	GAGTC	3 cut(s)	202, 208, 625
PpsI	GAGTC	3 cut(s)	202, 208, 625
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	2 cut(s)	724, 874
Psp1406I	AACGTT	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	4 cut(s)	132, 543, 895, 1079
PspGI	CCWGG	4 cut(s)	132, 543, 895, 1079
PspN4I	GGNNCC	2 cut(s)	266, 1033
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	178, 410
RsaI	GTAC	2 cut(s)	1019, 1094
RsaNI	GTAC	2 cut(s)	1018, 1093
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	2 cut(s)	724, 874
SaqAI	TTAA	4 cut(s)	270, 401, 521, 615
SatI	GCNGC	3 cut(s)	6, 372, 823
Sau3AI	GATC	5 cut(s)	164, 178, 410, 759, 1083
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	1094
SchI	GAGTC	3 cut(s)	202, 209, 625
ScrFI	CCNGG	5 cut(s)	134, 276, 545, 897, 1081
SduI	GDGCHC	4 cut(s)	724, 865, 874, 967
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	3 cut(s)	425, 662, 683
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	269, 850
SmoI	CTYRAG	2 cut(s)	269, 850
SphI	GCATGC	1 cut(s)	920
Sse9I	AATT	3 cut(s)	398, 763, 996
SsiI	CCGC	3 cut(s)	152, 225, 414
SspMI	CTAG	2 cut(s)	662, 836
SstI	GAGCTC	2 cut(s)	724, 874
StyD4I	CCNGG	5 cut(s)	132, 274, 543, 895, 1079
StyI	CCWWGG	2 cut(s)	826, 927
TaaI	ACNGT	2 cut(s)	598, 860
TaiI	ACGT	2 cut(s)	774, 1023
TasI	AATT	3 cut(s)	398, 763, 996
TatI	WGTACW	1 cut(s)	1092
TfiI	GAWTC	1 cut(s)	881
Tru1I	TTAA	4 cut(s)	270, 401, 521, 615
Tru9I	TTAA	4 cut(s)	270, 401, 521, 615
TscAI	CASTG	2 cut(s)	562, 603
TseI	GCWGC	3 cut(s)	5, 371, 822
TspDTI	ATGAA	4 cut(s)	11, 55, 206, 963
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	562, 603
Vha464I	CTTAAG	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	920
XspI	CTAG	2 cut(s)	662, 836
ZrmI	AGTACT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.